Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc03g045050.3.1
CDS Infomation	Nuclear matrix constituent-like protein 1 (AHRD V3.3 *** E5GCT1_CUCME)
Sequence	ATGTCTACCCCGCCGAGAAAGGTTTTCTCCGGCTGGACTTTGACACCCAGAACCGATCTG GCTAATAAGACAGTTTCTAAGGGTAAAGATGTTGTTTTTATGGGTTCTGGACAAAAGGTT TTGTCATCAATTCAAGATTATGATACCGTGGATAAAGTAGTGCTACTTGATAAGGTGTCG AAGCTTGAAAATGAGCTTGTTGACTATCAGTACAATATGGGCCTTCTCTTGATTGAGAAA AAGGAGTGGTCTGCTAAGCTTGAAGAAATTAAGCAAGCCTTAAGTGAAGCAAATGAGGCC TATAGAAGAGAACATACAGCTCACTTAATTGCTCTATCTGAAGTGGAGAAACGGGAGGAG AATTTGAGGAAGGCATTGGGTGTTGAGAACCAATGTGTGCGTGAGTTAGAGAAGGAACTG CGTGAGATGCGCTCTCAGTATGCAGAGACCAAGTATGTAGCTGATTCGAAATTAGATGAG GCAAAGGCATTGGCTACTAGTGTTGAAGAGAATTCACTACATGTAGAACTGAAATTGCGT GCAGCTGACGCCAAGACCGCTGAGGTGAGTAGAAAAAGTTCAGATGTTGAGAGGAAAATG CGTGATATCGAGGCTCAAGAAAATGCACTTAGAAGAGAACGGTCCTCTTTCAATACCGAG CGTGAAGCTCATGAGAGTGCTATATCTAAACACAGAGAAGAGTTGCGAGAATGGGAAAGA AAACTAAAGGAAGGAGAGGAGAGGCTGGCTGATGCTCGAACATTGCTTAATCAAAGAGAG CAGCGAGCAAATGAGAATGACGGCATTCTGAGGCAAAAGCAGAGTGACCTGGAAGATGAG CAGAGGAAGATTGACATAGCTAACTCAGTTTTGAGGAAGAAAGAAGTTGACATGAGCAGC CGACTAGCTATCCTTGCTTCTAAGGAGAAGGCAAGTGAACTTGAGGATGTGAGAAAGAGC CTGGAGATAAAAAAGGAAGAATTAGATGAACTACAGGAAAAGCTAAATGCAAAAGAAAGA GAGGAAATTCAAAAGCTAATGGATGAACATAGAGCTATCCTGAAATCTAAGGAGGAGGAG TTTGAATTAGAGATGAGACAGAGGCATGCATCACTAGATGAGGAACTGGAAAACAAGGTG ATTGAACTGGAGAAGAAGGAGGCTGAAGTTGGTCATATTGAAGAAAAACTCAAAAAACGT GAACAGGCACTTGAAAAGAAAAGTGACAAAATGAAAGAGAAGGAAAAAGATCTTGAATTG AAGCTGAAAGCACTAAAGGAAAGGGAGAAGTCTCTGAAAATTGATGAGAGAGAATTGGAA ACTGAAAAGAAGCAGATATTTACTGAGAAGGATCGTTTACTGGATTTAAGAGTTGAACTT GAGAACAGAAGAGCTGAACTTGAAAAACAACAGCTCAAGATTAATGAGGGAATCGAGCAG CTTAAAATAACCGAAGATGAGAAAATGGAACATGCTCGCCTTCAATCAGAACTGAAGCAG GAGATCGACAAGTGCAGAGATTTGCGAGACACTCTTTTGAATGAAGCTGAAGATTTAAAG CAGGAAAAAGAGAGATTTGAGAGAGAATGGGAAGAGCTGGATGAGAAAAGATCTGCGATC AAGAAGGAGTTGCAGGAAGTTAATGATTCGAAAAAGAAATTTGAGAAACTGCAGCACACT GAAGAGGAAAGGTTGAAGAAGGAGAAGCTGGAAACAGAAAATTATGTTCAGAGAGAGTTG GAAGCCCTTAAGGTGGCACAAGAGACATTTGCAGCTACAATGGATCATGAGAGATCAGTA TTATCTGAGAAAACTCAAAGTGAGAAGATCCGAATGCTTCATGATTTCGAAAAACAAAAA CGAGATCTTGAGAGTGAAATGCAGCGGAAGCGGGAGGAAATGGAATCCGCACTGCATGAG CAGAAGAAACGCTTTGAGGAAGAGAGGCAGAGGGAACTCAGCAATGCTAACTATTTAAGG GAAGTAGCCCATAAGGAAATGGAAGTGATGAAGTCAGAAAGAGTAAGGCTGGAGCACGAA AAACAAGAAATTTCATCAAACAAGATGCATCTGGTGGAACAACAGTCAGAGATGAAAAAG GACATTGATGTGCTCGATGGTTTAAGCAGGAAGTTGAAGGATCAAAGGGAAGCTTTTGCA AAAGAAAGGGAGAGGTTTCTTGCTTTTGTCAAGAAGCAGGAGAATTGCAGCTCATGTGGA GAGGGGATTCGTATATTTGAGCTTTCTGACCTTCAACCTCTAAATGATGTGGTGGATTTA GAGGCCCCTTCCCTGCGAAATGTTGCACAGGAATATTTAACTGATGGTTTCCAGGACACA CCTGTAAGGGCTAACAATGAGTTGTTGCCAGGTGCTCTTAATTCAGGATCTATGGCTTCT GCTGGAACCATGTCCTGGCTTCGCAAATGTACAACAAAGCTTCTGAAGTTTTCACCAGGT AAGAAAATTGAGCATCCTGCATCTCAAGATCTCATTGGCGGATCTTCTCCGGAAGAGAAA TTCGAAGGTGAATTACCTGATACTATGGTGAAAAAAGATCAAGTAGATCTGGCTATCTCT ATTAAAGACACATTTGATGACCAAAAACTTCAAACAGATAACAGTGTTAGAGAGGTGGAA GTTGGCAAAGATGTTCCTGAAGACTCTCAGCATTCGAACAGAAATAGCCAGCGCAGACCC GTCAGGAAAGGGCGTGGTAAAAACAGTAAGACAGGTCACACTAATTCGAAAGCTACAAGT GCAAAAATTATCCTTGGAGAAAATGTTAAGGAGTCTGAGAATATACTCGTCAATGGAGGT TTTGAGACCTCAATTAATGTGAATGAGAGCCAGAAAGAAGATTCCAGTCTCTTTGGTGAA GCGCCAAGTAAGACCAGAAAGCGTACTCGCATCCATGGAACAGCAAGTGAATTTGATGGA AGTCATAGTGATGGACAGTCAGATAGTGTGACAACCACCAGCAGGAGGAAGAGGAGGCAA AAGGCTGCCCCGTCTGTGCAGGCTCCTGGTGAAAAAAGATACAATCTCCGTCATCCCAGA AGTGCTGCTGTAGCAACAGCTAATGGATCCTTGCCAGAGCTGGTCTCAAAATCTCAGGAA GAAAATGGGGACTCCAAAGTCGTTCCAGAAACTCCTGCAGCCATCAGTGATGGAGAACTC AGAAACTCTGATGCTGCTCTCCCCGCTGTAGCCGATAGCCCTTTGATTGAAGCAGCAGAT GATCAGGCATGCGCTGGTGATATAGCTAATGAATTGGTAGATGATACAGGTTTAAGTGAA GAAATAAATGGAACACCAGAAGGTCCCTCAGCTTACAATGTCTACGACGAGGAACATGAA GGTGACACCATTGTGCAAGAAGAAGATGGAGAACGAGATGAGGATGCTGATGAGAACGAT GAATTAGATGAGGGCAACGAGGAGGAAGAGGTTCCGCATCCTGGTGAAGTCTCAATAGGG AAGAAGATTTGGAGTTTCATCACCACATAG

Peptide Sequence

PEP ID	Solyc03g045050.3.1
PEP Infomation	Nuclear matrix constituent-like protein 1 (AHRD V3.3 *** E5GCT1_CUCME)
Sequence	MSTPPRKVFSGWTLTPRTDLANKTVSKGKDVVFMGSGQKVLSSIQDYDTVDKVVLLDKVS KLENELVDYQYNMGLLLIEKKEWSAKLEEIKQALSEANEAYRREHTAHLIALSEVEKREE NLRKALGVENQCVRELEKELREMRSQYAETKYVADSKLDEAKALATSVEENSLHVELKLR AADAKTAEVSRKSSDVERKMRDIEAQENALRRERSSFNTEREAHESAISKHREELREWER KLKEGEERLADARTLLNQREQRANENDGILRQKQSDLEDEQRKIDIANSVLRKKEVDMSS RLAILASKEKASELEDVRKSLEIKKEELDELQEKLNAKEREEIQKLMDEHRAILKSKEEE FELEMRQRHASLDEELENKVIELEKKEAEVGHIEEKLKKREQALEKKSDKMKEKEKDLEL KLKALKEREKSLKIDERELETEKKQIFTEKDRLLDLRVELENRRAELEKQQLKINEGIEQ LKITEDEKMEHARLQSELKQEIDKCRDLRDTLLNEAEDLKQEKERFEREWEELDEKRSAI KKELQEVNDSKKKFEKLQHTEEERLKKEKLETENYVQRELEALKVAQETFAATMDHERSV LSEKTQSEKIRMLHDFEKQKRDLESEMQRKREEMESALHEQKKRFEEERQRELSNANYLR EVAHKEMEVMKSERVRLEHEKQEISSNKMHLVEQQSEMKKDIDVLDGLSRKLKDQREAFA KERERFLAFVKKQENCSSCGEGIRIFELSDLQPLNDVVDLEAPSLRNVAQEYLTDGFQDT PVRANNELLPGALNSGSMASAGTMSWLRKCTTKLLKFSPGKKIEHPASQDLIGGSSPEEK FEGELPDTMVKKDQVDLAISIKDTFDDQKLQTDNSVREVEVGKDVPEDSQHSNRNSQRRP VRKGRGKNSKTGHTNSKATSAKIILGENVKESENILVNGGFETSINVNESQKEDSSLFGE APSKTRKRTRIHGTASEFDGSHSDGQSDSVTTTSRRKRRQKAAPSVQAPGEKRYNLRHPR SAAVATANGSLPELVSKSQEENGDSKVVPETPAAISDGELRNSDAALPAVADSPLIEAAD DQACAGDIANELVDDTGLSEEINGTPEGPSAYNVYDEEHEGDTIVQEEDGERDEDADEND ELDEGNEEEEVPHPGEVSIGKKIWSFITT*

Transcript Sequence

Transcript ID	Solyc03g045050.3.1
Transcript Infomation	Nuclear matrix constituent-like protein 1 (AHRD V3.3 *** E5GCT1_CUCME)
Sequence	AGTTTTTTTTTCTTGTATCTAATTTTATGGGTCGATACGAAACACATTATTTATTATTAT TAGTTAGAAATGGATAATGTAAAGTGTATATGTAGATAGGCAAAAATACATGGCTTAGAA GACCCCCATTCCATCTCTTCCCAAAGCTTCCTAAGAACCAACCTGTTAACACCGTGGCAT TACAAAGCAACATATTCCCTTATCCCCATAAATACCCTTAGATCCTTCCTTATTTACATC TTATACCCTTCCTTTAAACTACTTTCACAAGGGTATTTTCGACAATACGAAAACAAAAGT CACTTTTACATCCAAAGGCGGCTCCCAAAATTCCGAAAACACCCTAACGTAACGGATATA ATTATACAAAGAAGAAGGACAAAATTGTAACTTTATATAAAACGAATGGCTGCTGGACTT CAAACAGTAAATAAATCGAAATTAAACAAAGTGAGGTTGCGATAAAGAGCGTAAGTAGGG TGGGGGTGGTTCAAAAACTCCGGTGAAGGGTTTTCAAAAAATCCGATTTTTTTCCAATAA TATACTCTCTTTTTTCTGCTATCGTGAAACCCACTAAAGGTTTTTTTTTTTTAATCGAAA GTTGAAATCTTTGAATTTTGAGATTCTTGGAAAGGTGATTATTGGGGTTTTCTGATAATG TCTACCCCGCCGAGAAAGGTTTTCTCCGGCTGGACTTTGACACCCAGAACCGATCTGGCT AATAAGACAGTTTCTAAGGGTAAAGATGTTGTTTTTATGGGTTCTGGACAAAAGGTTTTG TCATCAATTCAAGATTATGATACCGTGGATAAAGTAGTGCTACTTGATAAGGTGTCGAAG CTTGAAAATGAGCTTGTTGACTATCAGTACAATATGGGCCTTCTCTTGATTGAGAAAAAG GAGTGGTCTGCTAAGCTTGAAGAAATTAAGCAAGCCTTAAGTGAAGCAAATGAGGCCTAT AGAAGAGAACATACAGCTCACTTAATTGCTCTATCTGAAGTGGAGAAACGGGAGGAGAAT TTGAGGAAGGCATTGGGTGTTGAGAACCAATGTGTGCGTGAGTTAGAGAAGGAACTGCGT GAGATGCGCTCTCAGTATGCAGAGACCAAGTATGTAGCTGATTCGAAATTAGATGAGGCA AAGGCATTGGCTACTAGTGTTGAAGAGAATTCACTACATGTAGAACTGAAATTGCGTGCA GCTGACGCCAAGACCGCTGAGGTGAGTAGAAAAAGTTCAGATGTTGAGAGGAAAATGCGT GATATCGAGGCTCAAGAAAATGCACTTAGAAGAGAACGGTCCTCTTTCAATACCGAGCGT GAAGCTCATGAGAGTGCTATATCTAAACACAGAGAAGAGTTGCGAGAATGGGAAAGAAAA CTAAAGGAAGGAGAGGAGAGGCTGGCTGATGCTCGAACATTGCTTAATCAAAGAGAGCAG CGAGCAAATGAGAATGACGGCATTCTGAGGCAAAAGCAGAGTGACCTGGAAGATGAGCAG AGGAAGATTGACATAGCTAACTCAGTTTTGAGGAAGAAAGAAGTTGACATGAGCAGCCGA CTAGCTATCCTTGCTTCTAAGGAGAAGGCAAGTGAACTTGAGGATGTGAGAAAGAGCCTG GAGATAAAAAAGGAAGAATTAGATGAACTACAGGAAAAGCTAAATGCAAAAGAAAGAGAG GAAATTCAAAAGCTAATGGATGAACATAGAGCTATCCTGAAATCTAAGGAGGAGGAGTTT GAATTAGAGATGAGACAGAGGCATGCATCACTAGATGAGGAACTGGAAAACAAGGTGATT GAACTGGAGAAGAAGGAGGCTGAAGTTGGTCATATTGAAGAAAAACTCAAAAAACGTGAA CAGGCACTTGAAAAGAAAAGTGACAAAATGAAAGAGAAGGAAAAAGATCTTGAATTGAAG CTGAAAGCACTAAAGGAAAGGGAGAAGTCTCTGAAAATTGATGAGAGAGAATTGGAAACT GAAAAGAAGCAGATATTTACTGAGAAGGATCGTTTACTGGATTTAAGAGTTGAACTTGAG AACAGAAGAGCTGAACTTGAAAAACAACAGCTCAAGATTAATGAGGGAATCGAGCAGCTT AAAATAACCGAAGATGAGAAAATGGAACATGCTCGCCTTCAATCAGAACTGAAGCAGGAG ATCGACAAGTGCAGAGATTTGCGAGACACTCTTTTGAATGAAGCTGAAGATTTAAAGCAG GAAAAAGAGAGATTTGAGAGAGAATGGGAAGAGCTGGATGAGAAAAGATCTGCGATCAAG AAGGAGTTGCAGGAAGTTAATGATTCGAAAAAGAAATTTGAGAAACTGCAGCACACTGAA GAGGAAAGGTTGAAGAAGGAGAAGCTGGAAACAGAAAATTATGTTCAGAGAGAGTTGGAA GCCCTTAAGGTGGCACAAGAGACATTTGCAGCTACAATGGATCATGAGAGATCAGTATTA TCTGAGAAAACTCAAAGTGAGAAGATCCGAATGCTTCATGATTTCGAAAAACAAAAACGA GATCTTGAGAGTGAAATGCAGCGGAAGCGGGAGGAAATGGAATCCGCACTGCATGAGCAG AAGAAACGCTTTGAGGAAGAGAGGCAGAGGGAACTCAGCAATGCTAACTATTTAAGGGAA GTAGCCCATAAGGAAATGGAAGTGATGAAGTCAGAAAGAGTAAGGCTGGAGCACGAAAAA CAAGAAATTTCATCAAACAAGATGCATCTGGTGGAACAACAGTCAGAGATGAAAAAGGAC ATTGATGTGCTCGATGGTTTAAGCAGGAAGTTGAAGGATCAAAGGGAAGCTTTTGCAAAA GAAAGGGAGAGGTTTCTTGCTTTTGTCAAGAAGCAGGAGAATTGCAGCTCATGTGGAGAG GGGATTCGTATATTTGAGCTTTCTGACCTTCAACCTCTAAATGATGTGGTGGATTTAGAG GCCCCTTCCCTGCGAAATGTTGCACAGGAATATTTAACTGATGGTTTCCAGGACACACCT GTAAGGGCTAACAATGAGTTGTTGCCAGGTGCTCTTAATTCAGGATCTATGGCTTCTGCT GGAACCATGTCCTGGCTTCGCAAATGTACAACAAAGCTTCTGAAGTTTTCACCAGGTAAG AAAATTGAGCATCCTGCATCTCAAGATCTCATTGGCGGATCTTCTCCGGAAGAGAAATTC GAAGGTGAATTACCTGATACTATGGTGAAAAAAGATCAAGTAGATCTGGCTATCTCTATT AAAGACACATTTGATGACCAAAAACTTCAAACAGATAACAGTGTTAGAGAGGTGGAAGTT GGCAAAGATGTTCCTGAAGACTCTCAGCATTCGAACAGAAATAGCCAGCGCAGACCCGTC AGGAAAGGGCGTGGTAAAAACAGTAAGACAGGTCACACTAATTCGAAAGCTACAAGTGCA AAAATTATCCTTGGAGAAAATGTTAAGGAGTCTGAGAATATACTCGTCAATGGAGGTTTT GAGACCTCAATTAATGTGAATGAGAGCCAGAAAGAAGATTCCAGTCTCTTTGGTGAAGCG CCAAGTAAGACCAGAAAGCGTACTCGCATCCATGGAACAGCAAGTGAATTTGATGGAAGT CATAGTGATGGACAGTCAGATAGTGTGACAACCACCAGCAGGAGGAAGAGGAGGCAAAAG GCTGCCCCGTCTGTGCAGGCTCCTGGTGAAAAAAGATACAATCTCCGTCATCCCAGAAGT GCTGCTGTAGCAACAGCTAATGGATCCTTGCCAGAGCTGGTCTCAAAATCTCAGGAAGAA AATGGGGACTCCAAAGTCGTTCCAGAAACTCCTGCAGCCATCAGTGATGGAGAACTCAGA AACTCTGATGCTGCTCTCCCCGCTGTAGCCGATAGCCCTTTGATTGAAGCAGCAGATGAT CAGGCATGCGCTGGTGATATAGCTAATGAATTGGTAGATGATACAGGTTTAAGTGAAGAA ATAAATGGAACACCAGAAGGTCCCTCAGCTTACAATGTCTACGACGAGGAACATGAAGGT GACACCATTGTGCAAGAAGAAGATGGAGAACGAGATGAGGATGCTGATGAGAACGATGAA TTAGATGAGGGCAACGAGGAGGAAGAGGTTCCGCATCCTGGTGAAGTCTCAATAGGGAAG AAGATTTGGAGTTTCATCACCACATAGTGAATGGCCGAAATGACAGTGCACATGGGTTGC ATGCATGTCTGAGGGTAGTTTTCTAGGCATGTTGACAAGTATTCCATTTATTTTGGTACA CTTTTAGAGCGGTTTCATGCTTTTAGAGTTTGTTTAGTGGTGGTGTGTATTCTTCTTGAA ATGAAAACAGAAGTGTCTTTTGAGGTCGTAGCTTTTTTAATGATTGTGATTAGGGTTGCC AGGTGCTTTCATTTTGTTTTAACAATCTTAGTGTCCATAATCTTGGTAGCATGATTTAAC TAGTGAAATTGTAACACTAGATTTCCCTTTTCATTGAAACAATGTTACAATAATTTAGTC GTATGGTGTTCTATTTTGTAAGTTGATTCATGATGACATCTTTATTTGTTACCTTA