Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g044090.3.1
CDS Infomation

Phototropic-responsive NPH3 family protein
Sequence

ATGAAGTATATGAAGCTTGGATCTAAGCCTGATCAGTTTCAGACTCAAGGAGATAGTATC
AGGTATGTAGCAGCTGAATTGGCAACTGACATGATTATTAATGTTGGAGATGTGAAATTT
TACCTCCACAAGAGTTATCGCTTACAGAAACTGATTGCGTGTACAAACGAGGAAAATATT
GATGAAATCAACATCCATGATATACCTGGTGGACCTGCTGCTTTTGAAGTGTGTGCAAAG
TTCTGTTATAATATGACAGTAACTTTAAATGCATATAATGTCGTTGCAGCTCGTTGTGCA
GCAGAGTACTTGGAAATGTATGAGTCAGTTGAGAAGGGAAATCTTATCTACAAGATTGAA
GTTTTTCTTACGTCTAGCATCTTCCGGAGCTGGAAAGACTCCATCATTGTTCTTCAGACC
ACAAAAGCTTTTCTTCCCTGGTCCGAGGAATTGAAAATCGTTAGTCATTGTCTGGAATCC
GTAGCTTCTAAAGCTTCTGTAGACACCTCAAAGGTGGACTGGTCTTACACTTATAACCAT
AAAAAACTTCCATCCGAAAACGGAAGTGATCTGCACTGTAATGCGATAAGCTGTCAACAG
CTTGTTCCAATAGATTGGTGGGTTGAGGACCTTTGTGAGCTTCATATTGATTTGTATAAA
CGGGTCATAGTAACAATAAAAACAAAAGGAAGGATTTCTTCAGAAGCAATAGGTGAAGCA
CTGAAAGCATATGCCAACCGGAGGCTCCCGGGATTCAGCAAGGGCAGTATACGAGGAAGT
GATCCTGAAAAGTATCGGTACATGGTTGATACGATTACTTGGTTGTTGCCCAAAGAGAAG
AACAGTGTTTCCTGCAGTTTCTTGATCAAATTGCTGCAAACATCTATTGCATGCGAATGT
GGACAAACGATGAGAAGTGAACTGAAGAGGAGGATTAGCCTGCATATGGAAGATGCAACA
GTAGGTGACTTACTAATTCGAGCTCCAGATAGTGAGACTATTATATTCGATATTGACATA
GTACACGACCTGGTAGAGAATTTCATGTTGCATCAAAAGAGAGGTCAGATTGATAGTTCT
GCAGATAATAAATTCCACGATATATGGCCCCCGTTTGCATCCGATGATTCCGAAGTAAAG
GTGGCTAGGGTAATCGATGGATACCTTGCTGAAGTTGCTAGAGATCCAAATCTACCGGTA
TCGAAGTTTATCAATCTTGCAGAATTGGTCTCTAGCTTCTCTAGACCTTCCCATGATGGA
ATTTACCGCGCTATTGACATGTATCTCAAGGAACATCCTGGGATAACTAAAAGCGAGAGA
AAAAGAATTTGTAGGCTAATGGACTGCAGGAAGCTATCAGCTGAGGCCTGCATGCATGCT
GTGCAGAACGAGCGCCTTCCTGTACGAATAGTTGTACAAGTTCTGTTCTTTGAGCAACTC
AGAGCCACAGCATCATCCGGTGGTGGCAGCACTCCTGACCTGACTAGACCGGTCAAATCT
TTGCTCCCAGTGGGATCTCAGAGGTGCTCCACATCAGCTACATCCAACATCGAGGACAAT
TCAGATGCTGTGCTCACAGCCAAGGAACTTAAAGATCTGAAAGGTGAGCTTGCAACTCTA
AGATTGAGAGACAGAGGAGATAACAATTGTAGTAACTTGAATGACATGATAAAAAATGCT
GCAACGGTTGACGATAGCAAAGTGAGGAGTTCAGTCATGTCCAAAAAGATGTTCTCAAAA
CTATGGTCAAATAAAGATAGACAAAGTGAGAATAGCAGCTCAGATACATCAGAAAGCCCA
TCATCTTCTAATGCAGGGGAAACAAAGTCTACCTCTTGTAGAGTGGGAGGCATTCCCTCT
CTTAATATTAGCTGA

Peptide Sequence

PEP ID

Solyc03g044090.3.1
PEP Infomation

Phototropic-responsive NPH3 family protein
Sequence

MKYMKLGSKPDQFQTQGDSIRYVAAELATDMIINVGDVKFYLHKSYRLQKLIACTNEENI
DEINIHDIPGGPAAFEVCAKFCYNMTVTLNAYNVVAARCAAEYLEMYESVEKGNLIYKIE
VFLTSSIFRSWKDSIIVLQTTKAFLPWSEELKIVSHCLESVASKASVDTSKVDWSYTYNH
KKLPSENGSDLHCNAISCQQLVPIDWWVEDLCELHIDLYKRVIVTIKTKGRISSEAIGEA
LKAYANRRLPGFSKGSIRGSDPEKYRYMVDTITWLLPKEKNSVSCSFLIKLLQTSIACEC
GQTMRSELKRRISLHMEDATVGDLLIRAPDSETIIFDIDIVHDLVENFMLHQKRGQIDSS
ADNKFHDIWPPFASDDSEVKVARVIDGYLAEVARDPNLPVSKFINLAELVSSFSRPSHDG
IYRAIDMYLKEHPGITKSERKRICRLMDCRKLSAEACMHAVQNERLPVRIVVQVLFFEQL
RATASSGGGSTPDLTRPVKSLLPVGSQRCSTSATSNIEDNSDAVLTAKELKDLKGELATL
RLRDRGDNNCSNLNDMIKNAATVDDSKVRSSVMSKKMFSKLWSNKDRQSENSSSDTSESP
SSSNAGETKSTSCRVGGIPSLNIS*

Transcript Sequence

Transcript ID

Solyc03g044090.3.1
Transcript Infomation

Phototropic-responsive NPH3 family protein
Sequence

TGTTTTGTAAAAAAAAAGGAAGTTTAGTGTTTTCCTCTTTGCCTGGTTATTAGTTTATAT
ATATATTTATGTTTCCCTCGAAAAATATTGAATTCATTTGAAACTTACTTACAAAAAGTA
AGTAGTATATAAACTCTCATCCTCCAATGTCCTTTTATTTTTATAATCAAAGATGCTATG
TCTTAGAAATTTACGTTTGCCTATATGAAACACCTTTTTTTTGGGTGGTAGTGGTTGTTT
GTTCATATTTGTGCATTTTTCCAGAATCAGTTGATGCTTTTTGTCTAAAAATTTGAGTGG
TGCACTTCAATTCATACCATTCTGATATGTGTCTTTGCTGTGACAGGCCTAAAAAAGCTC
TGAATTTTAGATCAGAGGTGAAGAGAATTCGCGCCAGAAGATGAAGTATATGAAGCTTGG
ATCTAAGCCTGATCAGTTTCAGACTCAAGGAGATAGTATCAGGTATGTAGCAGCTGAATT
GGCAACTGACATGATTATTAATGTTGGAGATGTGAAATTTTACCTCCACAAGAGTTATCG
CTTACAGAAACTGATTGCGTGTACAAACGAGGAAAATATTGATGAAATCAACATCCATGA
TATACCTGGTGGACCTGCTGCTTTTGAAGTGTGTGCAAAGTTCTGTTATAATATGACAGT
AACTTTAAATGCATATAATGTCGTTGCAGCTCGTTGTGCAGCAGAGTACTTGGAAATGTA
TGAGTCAGTTGAGAAGGGAAATCTTATCTACAAGATTGAAGTTTTTCTTACGTCTAGCAT
CTTCCGGAGCTGGAAAGACTCCATCATTGTTCTTCAGACCACAAAAGCTTTTCTTCCCTG
GTCCGAGGAATTGAAAATCGTTAGTCATTGTCTGGAATCCGTAGCTTCTAAAGCTTCTGT
AGACACCTCAAAGGTGGACTGGTCTTACACTTATAACCATAAAAAACTTCCATCCGAAAA
CGGAAGTGATCTGCACTGTAATGCGATAAGCTGTCAACAGCTTGTTCCAATAGATTGGTG
GGTTGAGGACCTTTGTGAGCTTCATATTGATTTGTATAAACGGGTCATAGTAACAATAAA
AACAAAAGGAAGGATTTCTTCAGAAGCAATAGGTGAAGCACTGAAAGCATATGCCAACCG
GAGGCTCCCGGGATTCAGCAAGGGCAGTATACGAGGAAGTGATCCTGAAAAGTATCGGTA
CATGGTTGATACGATTACTTGGTTGTTGCCCAAAGAGAAGAACAGTGTTTCCTGCAGTTT
CTTGATCAAATTGCTGCAAACATCTATTGCATGCGAATGTGGACAAACGATGAGAAGTGA
ACTGAAGAGGAGGATTAGCCTGCATATGGAAGATGCAACAGTAGGTGACTTACTAATTCG
AGCTCCAGATAGTGAGACTATTATATTCGATATTGACATAGTACACGACCTGGTAGAGAA
TTTCATGTTGCATCAAAAGAGAGGTCAGATTGATAGTTCTGCAGATAATAAATTCCACGA
TATATGGCCCCCGTTTGCATCCGATGATTCCGAAGTAAAGGTGGCTAGGGTAATCGATGG
ATACCTTGCTGAAGTTGCTAGAGATCCAAATCTACCGGTATCGAAGTTTATCAATCTTGC
AGAATTGGTCTCTAGCTTCTCTAGACCTTCCCATGATGGAATTTACCGCGCTATTGACAT
GTATCTCAAGGAACATCCTGGGATAACTAAAAGCGAGAGAAAAAGAATTTGTAGGCTAAT
GGACTGCAGGAAGCTATCAGCTGAGGCCTGCATGCATGCTGTGCAGAACGAGCGCCTTCC
TGTACGAATAGTTGTACAAGTTCTGTTCTTTGAGCAACTCAGAGCCACAGCATCATCCGG
TGGTGGCAGCACTCCTGACCTGACTAGACCGGTCAAATCTTTGCTCCCAGTGGGATCTCA
GAGGTGCTCCACATCAGCTACATCCAACATCGAGGACAATTCAGATGCTGTGCTCACAGC
CAAGGAACTTAAAGATCTGAAAGGTGAGCTTGCAACTCTAAGATTGAGAGACAGAGGAGA
TAACAATTGTAGTAACTTGAATGACATGATAAAAAATGCTGCAACGGTTGACGATAGCAA
AGTGAGGAGTTCAGTCATGTCCAAAAAGATGTTCTCAAAACTATGGTCAAATAAAGATAG
ACAAAGTGAGAATAGCAGCTCAGATACATCAGAAAGCCCATCATCTTCTAATGCAGGGGA
AACAAAGTCTACCTCTTGTAGAGTGGGAGGCATTCCCTCTCTTAATATTAGCTGAAAAGT
AGCCAC