Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g043910.3.1
CDS Infomation

NAD(P)H-quinone oxidoreductase subunit J, chloroplastic (AHRD V3.3 --* NDHJ_PHYPA)
Sequence

ATGTCATGGTTGGCTCGATCAATCGCCAACACCCTGAATCTGGACGACGACACAAACGTC
GTCGTTCCACCTCCTAATCCAGATCACTCCACTGACAATCCAAAACCGGAAAATCATCAA
CAGACAGAGGATTCATCTTCACCGACATCGCCTTCACGTGGCGTCAAAGAGGATCTCTCG
GAGCTAACTAAAACACTAACCAGTCAATTTTGGGGAGTCGCATCATTTCTAGCTCCACCG
CCACAATCCGATTCATATAAGCCTATTGATAACTCCAAATCGGATCTTCATGAGGAGGAA
TCCGACCCGGCGGCGGGGATTGTAGGTTTGCAGACTGACTTTGCTGAAATCGGTGGGAAG
TTCAGGAGCGGAATATCTTCACTGTCGAGTAATATGGCGGTGTCAGAAATTACTAAAATG
GCTTCGAATTTACTGCAGTTGGGACCGGAAGAGGAGGAAAGCTATGATATGGAGAAAGGT
GTTGTCGGTGTTACGGAAGAAGTAGTGGCTTTCGTTAGGGACATTTCGATGCATCCTGAA
ACTTGGTTGGATTTCCCTTTGCCTGAAAATGAAGATGTTGAAGATTTCTACTTGTCTGAT
GCACAGCAAGAGCATGCATTAGCTGTTGAACAACTTGCCCCAAGATTACCTGCTTTGAGA
ATTGAGCTCTGTCCAATTTACATGAATGAAGCGCGCTTTTGGGAGATCTACTTTGTACTT
CTTCACCCTCGACTGGATAAGCAAGATGCTAAGCTTTTGTCAACACCACAGGTTCTCAAA
GCCAGGGCCTCATTGGCACAAGAGTTGCATAAGCGAACTAAGCCAATAGAAGAAGACTGG
CCAGTGAAGAGGACTTCTGAATCAAATGACAGAAATAACTCTCGGCATGAAGAGATTGTC
TCAGTGCCGTCCACTGCGCTTTCTGCAGATGTGGTTCATGAGATGTCTAGTGTGGAATCG
AGCACTTTTACTGCAGTACCTGTCCCTGCTACCGAGAAGCAGCCTGTCCTTAGTAGTGAA
AGCCAAGTTGTTGACAAACCAGTGGTTGAAGGAGAACTTGTTACCCATGGTAATGTTGAA
AAGCAACCTGTTATTAGCCATGAAATCCAAATTGTTGACAAACCAGTGGTTGAAGGAGGA
CTTATTACCCATAGTAATGTCGAAAAGCAGCCTGTGATTAGCCGTGAAATCCAAATTGTT
GACAAACCAGTGGTTGAAGGAGGACTTATTACCCATAGTAATGTTGAAAAGCAGCCTGTC
GTTAGCAGTGAAATCCAAATTATTGACAAACCAGTTGTTGAAGGTGGAGTTGCTACCCAT
AAGAATGTTGAAAAGCAGCCTGCGATTAGCAGTGAAATCCAAATTGTTGACAAATCTGTG
GTTGAAGGAGGACTTGCTACCCATAAGAATGTTGAAAAACCACAATCTGTTTCCACTATT
AAGTTACAAGAGAGTGACGGAGATGATGGTGATGATTGGTTAAAGGAAGAAGGCACAGAA
TTTGTAGGTGTTAGTAAGACCACCATTCCGATTGACAATGAGGAGGATGTATCATTTAGT
GATCTTGAAGAGGACGACATGGACGTGCCTGAAAATGTCTAG

Peptide Sequence

PEP ID

Solyc03g043910.3.1
PEP Infomation

NAD(P)H-quinone oxidoreductase subunit J, chloroplastic (AHRD V3.3 --* NDHJ_PHYPA)
Sequence

MSWLARSIANTLNLDDDTNVVVPPPNPDHSTDNPKPENHQQTEDSSSPTSPSRGVKEDLS
ELTKTLTSQFWGVASFLAPPPQSDSYKPIDNSKSDLHEEESDPAAGIVGLQTDFAEIGGK
FRSGISSLSSNMAVSEITKMASNLLQLGPEEEESYDMEKGVVGVTEEVVAFVRDISMHPE
TWLDFPLPENEDVEDFYLSDAQQEHALAVEQLAPRLPALRIELCPIYMNEARFWEIYFVL
LHPRLDKQDAKLLSTPQVLKARASLAQELHKRTKPIEEDWPVKRTSESNDRNNSRHEEIV
SVPSTALSADVVHEMSSVESSTFTAVPVPATEKQPVLSSESQVVDKPVVEGELVTHGNVE
KQPVISHEIQIVDKPVVEGGLITHSNVEKQPVISREIQIVDKPVVEGGLITHSNVEKQPV
VSSEIQIIDKPVVEGGVATHKNVEKQPAISSEIQIVDKSVVEGGLATHKNVEKPQSVSTI
KLQESDGDDGDDWLKEEGTEFVGVSKTTIPIDNEEDVSFSDLEEDDMDVPENV*

Transcript Sequence

Transcript ID

Solyc03g043910.3.1
Transcript Infomation

NAD(P)H-quinone oxidoreductase subunit J, chloroplastic (AHRD V3.3 --* NDHJ_PHYPA)
Sequence

TATCGGACAAAAGGAGTATTATTTTACTATTTAATTCCAAAAAATAACGACTACCCATGC
AGATACTTCAGAACAACAAAGTTAGTTATACGTACTTTGCTTATTTTCTATTTTTTTTTC
AATTCGGCAGCTAACATTTGTACAGTTAATCACAACCGTTAAATTACGCATCGCCGGCGA
TCTGTAAACTCCGATCACCTCTCCGTGATCTGACTAACAATGTCATGGTTGGCTCGATCA
ATCGCCAACACCCTGAATCTGGACGACGACACAAACGTCGTCGTTCCACCTCCTAATCCA
GATCACTCCACTGACAATCCAAAACCGGAAAATCATCAACAGACAGAGGATTCATCTTCA
CCGACATCGCCTTCACGTGGCGTCAAAGAGGATCTCTCGGAGCTAACTAAAACACTAACC
AGTCAATTTTGGGGAGTCGCATCATTTCTAGCTCCACCGCCACAATCCGATTCATATAAG
CCTATTGATAACTCCAAATCGGATCTTCATGAGGAGGAATCCGACCCGGCGGCGGGGATT
GTAGGTTTGCAGACTGACTTTGCTGAAATCGGTGGGAAGTTCAGGAGCGGAATATCTTCA
CTGTCGAGTAATATGGCGGTGTCAGAAATTACTAAAATGGCTTCGAATTTACTGCAGTTG
GGACCGGAAGAGGAGGAAAGCTATGATATGGAGAAAGGTGTTGTCGGTGTTACGGAAGAA
GTAGTGGCTTTCGTTAGGGACATTTCGATGCATCCTGAAACTTGGTTGGATTTCCCTTTG
CCTGAAAATGAAGATGTTGAAGATTTCTACTTGTCTGATGCACAGCAAGAGCATGCATTA
GCTGTTGAACAACTTGCCCCAAGATTACCTGCTTTGAGAATTGAGCTCTGTCCAATTTAC
ATGAATGAAGCGCGCTTTTGGGAGATCTACTTTGTACTTCTTCACCCTCGACTGGATAAG
CAAGATGCTAAGCTTTTGTCAACACCACAGGTTCTCAAAGCCAGGGCCTCATTGGCACAA
GAGTTGCATAAGCGAACTAAGCCAATAGAAGAAGACTGGCCAGTGAAGAGGACTTCTGAA
TCAAATGACAGAAATAACTCTCGGCATGAAGAGATTGTCTCAGTGCCGTCCACTGCGCTT
TCTGCAGATGTGGTTCATGAGATGTCTAGTGTGGAATCGAGCACTTTTACTGCAGTACCT
GTCCCTGCTACCGAGAAGCAGCCTGTCCTTAGTAGTGAAAGCCAAGTTGTTGACAAACCA
GTGGTTGAAGGAGAACTTGTTACCCATGGTAATGTTGAAAAGCAACCTGTTATTAGCCAT
GAAATCCAAATTGTTGACAAACCAGTGGTTGAAGGAGGACTTATTACCCATAGTAATGTC
GAAAAGCAGCCTGTGATTAGCCGTGAAATCCAAATTGTTGACAAACCAGTGGTTGAAGGA
GGACTTATTACCCATAGTAATGTTGAAAAGCAGCCTGTCGTTAGCAGTGAAATCCAAATT
ATTGACAAACCAGTTGTTGAAGGTGGAGTTGCTACCCATAAGAATGTTGAAAAGCAGCCT
GCGATTAGCAGTGAAATCCAAATTGTTGACAAATCTGTGGTTGAAGGAGGACTTGCTACC
CATAAGAATGTTGAAAAACCACAATCTGTTTCCACTATTAAGTTACAAGAGAGTGACGGA
GATGATGGTGATGATTGGTTAAAGGAAGAAGGCACAGAATTTGTAGGTGTTAGTAAGACC
ACCATTCCGATTGACAATGAGGAGGATGTATCATTTAGTGATCTTGAAGAGGACGACATG
GACGTGCCTGAAAATGTCTAGAAAGTAAATTACAGTTTTGATAAAGACTCTCAAGATTGT
GTTAAGGAGAGAAAAGCTCCACCAACTTGTCAAAAATGCCAACTTTTTTCGATCCACCAC
ATAAACGTCCATACCGCTGATAACAAAGAGCCCAGCGACTGGCTGAGTGTTGATGAATGA
TGGCATTGAGGTTGCTTGATACAAAGTAAGATTTTGAATATAGTTTTCCTCCCACTCATT
TCTTTTTTATGTTGTGAATAGGTTTTTTGGTTCTAAATGCTGAACTCTTTGCTCTCTGGG
GGTAATGATTCTATAACA