Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g031460.1.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XF40_CYNCS)
Sequence

ATGGCCTCTTTTAGCAGAGTAATCCGCCGGACTTTTTCCACGGCTGAAGCCTCAGTATCT
CCGATCAGAGTAATCTCCGACGACTTATACAAAGAGAGGAACCTCAAAAGACTCGTTGAG
AAATTCAAACAGTATTCAGATGTCACAAGATTCCGCACAAAAACCGGCATTTACGAATCT
ACAGTTCATCGATTAGCCTCTGCAAAACGGTACAAATGGATCGAAGAAATCCTCGAACAC
CAAAAACAATACCGACCCGACATCTCCAAAGAGAGTTTCGCAGCAAGGCTGGTGAGTTTG
TATGGAAAGTCTGGGTTATTTGAGAATGCCCAGAAACTGTTTGATGAAATGCCTGAAAGA
AATTGTAAGCAGAGTGTGAAATCTGTTAATGCCCTTTTAGGGGCTTGTGTGAATTCGCAG
AAATATGAAAAACTTGAAGGTTTGTTTGAGGAATTGCTGGAGAAGTTGAAGGTGAAGCCG
GATGTTGTCACGTATAATATAATGATTAAGGGGTTGTGTGACAAGGGGGAATTGGATAAA
GCAGCTGCCTTTGTTAATGAGATTGAGAAGAACGGGTTAAAGCCTGATTTGGTTACCTTT
AATACGATTCTTGGGGTGTTTTACTCGAATGGTAAGTTTGATGATGGCGAGAAGATGTGG
AAGCTAATGGTTAGCAAGAATGTTGCTCCTGATATTAGAAGTTACAATGCTAAGCTGGTA
GGACTGATGAATGAGAACAAAGTTTCGGAGGCTGCCAAGCTTGTTGGCGAATTGGGAAGT
TTTAAGTTAAAGCCTGATGTGTTTACATATGGTGCGTTGATTAGAGGATTTTGTAAAATG
AGTAATTTGGAGGAGGCTAAAAAGTGGTATAAAGAACTTGTGAAGAGCGGTTCTGTTCCA
AACAAGGTGATATTCGTTAGTGTCATTTCATCTGCGTGCGAAAAGGGTGATTTTGATTGG
GCTCTTGAGTTGTGCAAAGAGGTTTTTAAAAGAAAGTGTAATGTTGATGCAAAGTTGTTG
CAAAGAGTGGTCGATGGGTTGGTGAAATCGTCTAGGATTCGAGAAGCTAAGGAGGTTGTG
CATTTGGGCAAGTCAAATGACTACCATCTTTATAAGCTCAATCTACCTTCAGTTGATTAA

Peptide Sequence

PEP ID

Solyc03g031460.1.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XF40_CYNCS)
Sequence

MASFSRVIRRTFSTAEASVSPIRVISDDLYKERNLKRLVEKFKQYSDVTRFRTKTGIYES
TVHRLASAKRYKWIEEILEHQKQYRPDISKESFAARLVSLYGKSGLFENAQKLFDEMPER
NCKQSVKSVNALLGACVNSQKYEKLEGLFEELLEKLKVKPDVVTYNIMIKGLCDKGELDK
AAAFVNEIEKNGLKPDLVTFNTILGVFYSNGKFDDGEKMWKLMVSKNVAPDIRSYNAKLV
GLMNENKVSEAAKLVGELGSFKLKPDVFTYGALIRGFCKMSNLEEAKKWYKELVKSGSVP
NKVIFVSVISSACEKGDFDWALELCKEVFKRKCNVDAKLLQRVVDGLVKSSRIREAKEVV
HLGKSNDYHLYKLNLPSVD*

Transcript Sequence

Transcript ID

Solyc03g031460.1.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XF40_CYNCS)
Sequence

ATGGCCTCTTTTAGCAGAGTAATCCGCCGGACTTTTTCCACGGCTGAAGCCTCAGTATCT
CCGATCAGAGTAATCTCCGACGACTTATACAAAGAGAGGAACCTCAAAAGACTCGTTGAG
AAATTCAAACAGTATTCAGATGTCACAAGATTCCGCACAAAAACCGGCATTTACGAATCT
ACAGTTCATCGATTAGCCTCTGCAAAACGGTACAAATGGATCGAAGAAATCCTCGAACAC
CAAAAACAATACCGACCCGACATCTCCAAAGAGAGTTTCGCAGCAAGGCTGGTGAGTTTG
TATGGAAAGTCTGGGTTATTTGAGAATGCCCAGAAACTGTTTGATGAAATGCCTGAAAGA
AATTGTAAGCAGAGTGTGAAATCTGTTAATGCCCTTTTAGGGGCTTGTGTGAATTCGCAG
AAATATGAAAAACTTGAAGGTTTGTTTGAGGAATTGCTGGAGAAGTTGAAGGTGAAGCCG
GATGTTGTCACGTATAATATAATGATTAAGGGGTTGTGTGACAAGGGGGAATTGGATAAA
GCAGCTGCCTTTGTTAATGAGATTGAGAAGAACGGGTTAAAGCCTGATTTGGTTACCTTT
AATACGATTCTTGGGGTGTTTTACTCGAATGGTAAGTTTGATGATGGCGAGAAGATGTGG
AAGCTAATGGTTAGCAAGAATGTTGCTCCTGATATTAGAAGTTACAATGCTAAGCTGGTA
GGACTGATGAATGAGAACAAAGTTTCGGAGGCTGCCAAGCTTGTTGGCGAATTGGGAAGT
TTTAAGTTAAAGCCTGATGTGTTTACATATGGTGCGTTGATTAGAGGATTTTGTAAAATG
AGTAATTTGGAGGAGGCTAAAAAGTGGTATAAAGAACTTGTGAAGAGCGGTTCTGTTCCA
AACAAGGTGATATTCGTTAGTGTCATTTCATCTGCGTGCGAAAAGGGTGATTTTGATTGG
GCTCTTGAGTTGTGCAAAGAGGTTTTTAAAAGAAAGTGTAATGTTGATGCAAAGTTGTTG
CAAAGAGTGGTCGATGGGTTGGTGAAATCGTCTAGGATTCGAGAAGCTAAGGAGGTTGTG
CATTTGGGCAAGTCAAATGACTACCATCTTTATAAGCTCAATCTACCTTCAGTTGATTAA