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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g025290.3.1
CDS Infomation

Hydroxyproline-rich glycoprotein (AHRD V3.3 *** B9I470_POPTR)
Sequence

ATGAGTAGCGTACAGAATACTGTAGATACTGTAAATGCTGCCGCTTCGGCTATAGTTAAT
GCAGAGAGTAGAGTTCAACCGTCTACAGTTCAGAAGAGAAGATGGGGAAGCTGCTGGAGT
CTATACTGGTGTTTTGGTTCTCACAAGCACAGCAAAAGAATTGGTCATGCCGTCCTTGTT
CCTGAACCTGTAGCACCTGGACCTGCTGTTCCAGTTACTGAAAATCCAAACCACTCAGCC
ACCATTGTAATTCCTTTTATAGCTCCTCCTTCTTCTCCTGCATCCTTTCTTCCGTCTGAT
CCTCCTTCTGCTACCCAGTCACCCGCTGGATTACTCTCTCTCAAAGCCCTCTCTATCAAT
GCATATTCTCCCGGTGGGACTGCGTCTATTTTTGCAATTGGTCCCTATGCTCATGAAACA
CAGTTAGTTTCCCCACCTGTTTTCTCAACCTTCACTACTGAACCATCTACTGCTAATTTT
ACTCCCCCACCTGAGCCGGTGCATATGACAACTCCACCTTCACCAGAAGTGCCTTTTGCG
CAGCTTTTGACATCATCACTGGCCCGCAACAGAAGATATAGTGGGTCCAATTATAAGTTC
CCGCTGTCCCAGTATGAGTTTGTGCCTTATCAAGATCCAGGAAGTCCAGGTAGTAATCTA
ATATCTCCTGGTTCAGTAGTATCAAATTCTGGCACCTCCTCACCTTTCCCTGGAAAATGC
CCTATTATTGAGTTTCGCAAGGGGGAACCTCCGAAATTTCTTGGTTATGAACATTTCTCC
ACTCGCAAATGGGGTTCAAGGGTTGGCTCAGGATCAGTAACGCCAAGTGGCTGGGGCTCT
AGGCTAGGGTCTGGAACTTTGACTCCGAACGGTGGAATTTCAAGGCTAGGTTCTGGTACT
GTGACTCCAAATGGTGGGGAACCTCCTTCCCGAGATAGTTATCTATTGGAGAACCAAATC
TCCGAGGTAGCATCTCTTGCCAATTCTGATAATGGTTCTGAAATTGGGGAAGCTGTAATT
GATCACAGAGTTTCATTTGAACTAACTGAAGAAGATGTCCCGAGTTGTAGAGAAAAGGAG
CCCGTCATGTCGCATTCTCAACCAACTCTTCCAATGGATGTGTCCAATTTGTTAGCCAGT
GAAATGAGAAGTGGTAGCTCTATGGCCGAAGAAAAAACCTATGGATCGCCTAGGAAAGCT
TCAGAAAGTGGGGAAGATGAATGCCATAGAAAGCACCGGAATATCACCTTTGGCTCAAGC
AAAGATTTTGATTTTGACAATGTGAAAATAGAAGTCTTGGAGAAGGACAGTATTGACTGT
GAATGGTGGACAAGTGACAAGGCTGCTGTGAAGGAATCAGGTATTCAAAACAACTGGACT
TTCTTTCCTGTGTTGCAACCAGGAGTCAGCTAA

Peptide Sequence

PEP ID

Solyc03g025290.3.1
PEP Infomation

Hydroxyproline-rich glycoprotein (AHRD V3.3 *** B9I470_POPTR)
Sequence

MSSVQNTVDTVNAAASAIVNAESRVQPSTVQKRRWGSCWSLYWCFGSHKHSKRIGHAVLV
PEPVAPGPAVPVTENPNHSATIVIPFIAPPSSPASFLPSDPPSATQSPAGLLSLKALSIN
AYSPGGTASIFAIGPYAHETQLVSPPVFSTFTTEPSTANFTPPPEPVHMTTPPSPEVPFA
QLLTSSLARNRRYSGSNYKFPLSQYEFVPYQDPGSPGSNLISPGSVVSNSGTSSPFPGKC
PIIEFRKGEPPKFLGYEHFSTRKWGSRVGSGSVTPSGWGSRLGSGTLTPNGGISRLGSGT
VTPNGGEPPSRDSYLLENQISEVASLANSDNGSEIGEAVIDHRVSFELTEEDVPSCREKE
PVMSHSQPTLPMDVSNLLASEMRSGSSMAEEKTYGSPRKASESGEDECHRKHRNITFGSS
KDFDFDNVKIEVLEKDSIDCEWWTSDKAAVKESGIQNNWTFFPVLQPGVS*

Transcript Sequence

Transcript ID

Solyc03g025290.3.1
Transcript Infomation

Hydroxyproline-rich glycoprotein (AHRD V3.3 *** B9I470_POPTR)
Sequence

ACATAATTACAAAATAACAGCTAGAGAAGAGTTTTTAATTTTATTTTTTTTAAAAAAAAT
AAATTAAACTTTTCCTCTTTCCTTCTTCTTATTAATATAATAAATAAATCGCTGTCTTTT
CTCGATTATTGTGTTTCTTCTTCTTCGAATGTCTCCTGATTTCTTTCTTAATTAAAAAAA
AAAACTCCGGCGGTTCAGTTACCGGAAAATCTATAATTCTTCGCCGGAGAACAGAATTTG
TATTTTTTAAAAAATTGTAGTTTTTTTTCTTCAAGGATGAGTAGCGTACAGAATACTGTA
GATACTGTAAATGCTGCCGCTTCGGCTATAGTTAATGCAGAGAGTAGAGTTCAACCGTCT
ACAGTTCAGAAGAGAAGATGGGGAAGCTGCTGGAGTCTATACTGGTGTTTTGGTTCTCAC
AAGCACAGCAAAAGAATTGGTCATGCCGTCCTTGTTCCTGAACCTGTAGCACCTGGACCT
GCTGTTCCAGTTACTGAAAATCCAAACCACTCAGCCACCATTGTAATTCCTTTTATAGCT
CCTCCTTCTTCTCCTGCATCCTTTCTTCCGTCTGATCCTCCTTCTGCTACCCAGTCACCC
GCTGGATTACTCTCTCTCAAAGCCCTCTCTATCAATGCATATTCTCCCGGTGGGACTGCG
TCTATTTTTGCAATTGGTCCCTATGCTCATGAAACACAGTTAGTTTCCCCACCTGTTTTC
TCAACCTTCACTACTGAACCATCTACTGCTAATTTTACTCCCCCACCTGAGCCGGTGCAT
ATGACAACTCCACCTTCACCAGAAGTGCCTTTTGCGCAGCTTTTGACATCATCACTGGCC
CGCAACAGAAGATATAGTGGGTCCAATTATAAGTTCCCGCTGTCCCAGTATGAGTTTGTG
CCTTATCAAGATCCAGGAAGTCCAGGTAGTAATCTAATATCTCCTGGTTCAGTAGTATCA
AATTCTGGCACCTCCTCACCTTTCCCTGGAAAATGCCCTATTATTGAGTTTCGCAAGGGG
GAACCTCCGAAATTTCTTGGTTATGAACATTTCTCCACTCGCAAATGGGGTTCAAGGGTT
GGCTCAGGATCAGTAACGCCAAGTGGCTGGGGCTCTAGGCTAGGGTCTGGAACTTTGACT
CCGAACGGTGGAATTTCAAGGCTAGGTTCTGGTACTGTGACTCCAAATGGTGGGGAACCT
CCTTCCCGAGATAGTTATCTATTGGAGAACCAAATCTCCGAGGTAGCATCTCTTGCCAAT
TCTGATAATGGTTCTGAAATTGGGGAAGCTGTAATTGATCACAGAGTTTCATTTGAACTA
ACTGAAGAAGATGTCCCGAGTTGTAGAGAAAAGGAGCCCGTCATGTCGCATTCTCAACCA
ACTCTTCCAATGGATGTGTCCAATTTGTTAGCCAGTGAAATGAGAAGTGGTAGCTCTATG
GCCGAAGAAAAAACCTATGGATCGCCTAGGAAAGCTTCAGAAAGTGGGGAAGATGAATGC
CATAGAAAGCACCGGAATATCACCTTTGGCTCAAGCAAAGATTTTGATTTTGACAATGTG
AAAATAGAAGTCTTGGAGAAGGACAGTATTGACTGTGAATGGTGGACAAGTGACAAGGCT
GCTGTGAAGGAATCAGGTATTCAAAACAACTGGACTTTCTTTCCTGTGTTGCAACCAGGA
GTCAGCTAATATCTTGAGCTAAAGGTTAAAAATCAACGTTAAAACGCACCGACGTTACTG
CTTCTGGTAATATATATATATTATATATATAAGCAAGCTGGGAATGCAATTTTCAGGCAT
AGAAATCTAATTGCAGCAAACTTAGCTTTAAAACTGAAGAGTTGGACAGACTTGTGCAGT
AATTGGTGTTTAATTTGGTGCTCAGATAGTTGGTCGGTCACCTGAAAATATTCCTTTGAA
TAAAGGACTTCTGTATACACCATAGAATATGTTTTGAAAAAGAGATGTAAATGATATTAT
TATTTCTTAAAAATGAGAATTTCTCACTTGTTTATGGTTTCAAA