Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g006960.3.1
CDS Infomation

Protein phosphatase 2C family protein (AHRD V3.3 *** AT5G51760.1)
Sequence

ATGTTCAGTGACAAGGACGATTACTCTGAGAAATGCCGTATGAGACGACGCCACCGTAGA
ATTCAAATGAGAAGGCAGCACCACCCGAATCTATTGTCATATTTGGGGCAAGGAATTTTT
GAAGCTGGGAAGATGGAAGCTTCTTCGTCTTCTCGTGAACCGGAGGCAACAGGACCGGTG
GTTGGAGCAATTTCTATTCCGGGGAGGCAGCGTGTAATGGAAGATACAATTTCAATTCGA
CCTAATCTATGCTCGCCGGAGATCAATCGCTGCAGACCTGTTGATTTTTTTGCTGTTTAC
GATGGACATGGTGGACGTCATGTAAACCCTACGCATAATCAACTTACAGCTGTTTTTCCT
ATTCAGGTAGCTTCAATGTGTAAAGAGAGAATGCATGAGGTACTAGAAGAAGAGCTGATG
CGCATGAAAAACAACCAAGACACGGGACGACAACCATTGGAAGGGCAGAGGATGGAGGAA
GCATGGAGAAGAGTATTCAAAAGTTGCTTCTTAAAGATAGATGAGATGGCATCATGCATA
TGTAGTGAATGTGGTAGTGTAGGCTACGAATGTGGCTGCCCGCTGAGCGTATTGAAACTC
ACAGGCTCCACTGCAGTGGTGGTAGTTTTGACGGATGAGACTATCATTGTAGCTAATTGT
GGTGACTCACGTGCTGTTCTTAGCCGCAGTGGAAGTGCGATCCCTCTTTCTTATGATCAC
AAACCAGACAAACGAGAAGAACGTGCCAGAATAGAGGCACGTGGAGGTCGAGTTGTGTTT
ACTGATGGAGCACGAGTTGAAGGAGTGCTTTCCATGTCCAGGGCAATAGGAGACAACAAT
TTAAAGCCATATATCACATCGGAGCCGGAGATGACCTTTACAAAAAGGGAAGCAGAGGAT
GAGTGCTTGATTCTCGCAAGTGATGGCTTGTGGGATGTGGTATCAAGTGATATAGCGTGT
GCAGTGGGTAGGGAGTGTCTTCGACAAAGAGATCCATCTGGGAACTTTAGCTCCAGGCTT
TCTTCCGTAGAAGGTGATAGCAGAGGAGCAATGTTTTCTTCACGAAGGGCATGCTCAGCA
GCAGCGCTGCTCACCCGGCTTGCTCTGGGCCGGAATAGCTGTGACAATATCAGTGTTATT
GTGGTGGACTTGAAAACAAACCACAGTGCTGTGTAG

Peptide Sequence

PEP ID

Solyc03g006960.3.1
PEP Infomation

Protein phosphatase 2C family protein (AHRD V3.3 *** AT5G51760.1)
Sequence

MFSDKDDYSEKCRMRRRHRRIQMRRQHHPNLLSYLGQGIFEAGKMEASSSSREPEATGPV
VGAISIPGRQRVMEDTISIRPNLCSPEINRCRPVDFFAVYDGHGGRHVNPTHNQLTAVFP
IQVASMCKERMHEVLEEELMRMKNNQDTGRQPLEGQRMEEAWRRVFKSCFLKIDEMASCI
CSECGSVGYECGCPLSVLKLTGSTAVVVVLTDETIIVANCGDSRAVLSRSGSAIPLSYDH
KPDKREERARIEARGGRVVFTDGARVEGVLSMSRAIGDNNLKPYITSEPEMTFTKREAED
ECLILASDGLWDVVSSDIACAVGRECLRQRDPSGNFSSRLSSVEGDSRGAMFSSRRACSA
AALLTRLALGRNSCDNISVIVVDLKTNHSAV*

Transcript Sequence

Transcript ID

Solyc03g006960.3.1
Transcript Infomation

Protein phosphatase 2C family protein (AHRD V3.3 *** AT5G51760.1)
Sequence

TTTAAAAATATAACAAGTAAAATTATGTTCTTTTGTTAATTAATAAGAAGGAAGGGAATA
GTAGAAAAGCAAAGAGTACGTGTCTCAAGTGGTTGCTTGGGGGCAAGATGAAGGTGGTGG
TGTTTGTCACATTTTTGTCAGTCAAATTTCTCAACATTTTTTGTCACTCTAGTTTGTGAT
GACACTATATATAGAAAACAAGTCGAAATAAGAGCTACAACACAACAAATATACCTACAC
TACACGTATACACAAATTGTACCATACGTTTCCAGTCCATTCCCGATCCCCGACTACATA
ACATAAATATGCCGTTTATTTCACCGTAAATTTCTGTAGCGGTTTACACTCGTTGGAACT
GATGTTCAGTGACAAGGACGATTACTCTGAGAAATGCCGTATGAGACGACGCCACCGTAG
AATTCAAATGAGAAGGCAGCACCACCCGAATCTATTGTCATATTTGGGGCAAGGAATTTT
TGAAGCTGGGAAGATGGAAGCTTCTTCGTCTTCTCGTGAACCGGAGGCAACAGGACCGGT
GGTTGGAGCAATTTCTATTCCGGGGAGGCAGCGTGTAATGGAAGATACAATTTCAATTCG
ACCTAATCTATGCTCGCCGGAGATCAATCGCTGCAGACCTGTTGATTTTTTTGCTGTTTA
CGATGGACATGGTGGACGTCATGTAAACCCTACGCATAATCAACTTACAGCTGTTTTTCC
TATTCAGGTAGCTTCAATGTGTAAAGAGAGAATGCATGAGGTACTAGAAGAAGAGCTGAT
GCGCATGAAAAACAACCAAGACACGGGACGACAACCATTGGAAGGGCAGAGGATGGAGGA
AGCATGGAGAAGAGTATTCAAAAGTTGCTTCTTAAAGATAGATGAGATGGCATCATGCAT
ATGTAGTGAATGTGGTAGTGTAGGCTACGAATGTGGCTGCCCGCTGAGCGTATTGAAACT
CACAGGCTCCACTGCAGTGGTGGTAGTTTTGACGGATGAGACTATCATTGTAGCTAATTG
TGGTGACTCACGTGCTGTTCTTAGCCGCAGTGGAAGTGCGATCCCTCTTTCTTATGATCA
CAAACCAGACAAACGAGAAGAACGTGCCAGAATAGAGGCACGTGGAGGTCGAGTTGTGTT
TACTGATGGAGCACGAGTTGAAGGAGTGCTTTCCATGTCCAGGGCAATAGGAGACAACAA
TTTAAAGCCATATATCACATCGGAGCCGGAGATGACCTTTACAAAAAGGGAAGCAGAGGA
TGAGTGCTTGATTCTCGCAAGTGATGGCTTGTGGGATGTGGTATCAAGTGATATAGCGTG
TGCAGTGGGTAGGGAGTGTCTTCGACAAAGAGATCCATCTGGGAACTTTAGCTCCAGGCT
TTCTTCCGTAGAAGGTGATAGCAGAGGAGCAATGTTTTCTTCACGAAGGGCATGCTCAGC
AGCAGCGCTGCTCACCCGGCTTGCTCTGGGCCGGAATAGCTGTGACAATATCAGTGTTAT
TGTGGTGGACTTGAAAACAAACCACAGTGCTGTGTAGTTTCTAGAGCTAGAATGTAACAT
ACGAGGCCCTTTTCGAGTTCTTTCACCGAATCAGGATAGTTTCCTCTTTTCTTGTCATTT
GCAAGTGAGTGATCTTTTATATAATGAAGTTGACAATTCAGAAACAAACGGTAAAGGTTC
TACTTAAAGATGAAACCTGTGTGGCTGACGTCTAGTTGAAAATGAAACTTAGATATCAGT
TTGATTTTATTCTTACATAATTGTAAGCGTACTACAATATATCTGGTGAAATTTTACAAT
TTCAATCAACAATGGTTTATCACTAAGGGATCGTAACCAATATTAATAAGAACATTCATG
ATTTTTTCTCACCAAAACACCATAACTTCCTCATGCGGCCTC