Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g006630.3.1
CDS Infomation

Sphingosine kinase, putative (AHRD V3.3 *** B9SFA5_RICCO)
Sequence

ATGGGTAACACGAAGCCCGTTATTACTGCAGCTCCGATTCTATCGGACCGGGTTCGGGTC
AACGGAGTTGAAACTCCGGTGACGTTTACGGCGGAGGAAGGTATACTCCGATGGAGTGAA
AATCGCTTGTCGATTGCGAAAGAGGTTCTCGGGATTACCGTCGAAGATTCGAAAATTAAA
ATTAGGGCTATTAAGGAGAAGGACGATGGTGGAATTATTTGCTGCGGCGGGAACACTAAA
GGTACTGTGAGGAGGAGTTATAATTTGGAAATGTTAACTGAGGATTCTCTTCGAATTTGG
AGTCAAAAGCTTCAAGAGTTCATTGATTCACTTGGTCGGCCAAAGAGACTTTTTGTGTTA
GTGAATCCTTATGGCGGAAAGAGATCTGCATCAAAGATTTTTATTGATAGTGTAAAGCCA
CTACTTGACGATGCAAATATCGACTATACAGTGCAAGAAACTAAATATCAGCTACATGCA
AAGGAAGTTGCTAAATCATTGGATATTCTGAGATTTGATGGAGTTGTTTGTGTCAGCGGG
GATGGAATTTTGGTTGAGGTAGTTAATGGCCTTCTTGAAAGAGAGGATTGGGATTCTGCA
ATAAAAATGCCTCTTGGAGTAGTACCTGCAGGCACCGGAAATGGCATGGCGAAGTCTCTT
CTAGATGCTGTTGGTCTATCTTGTACTGCGTCCAATGCAACACTTGCTATTATTAGAGGA
CACAAGCAATCACTAGATGTAGCTACTATTTCACAGGGGCTGAACAGGTTTTTCAGTGTG
CTGATGCTTGCCTGGGGACTTATAGCTGATATTGATATCGAGTCTGAGAAGTATAGATGG
ATGGGCAGTGCTCGAATAGATTATTATGCAATACAACGAATATTCCGCCTCAGGAGGTAC
AATGGTTGTATAAAATTTGTGGCTGCACCAGGCTATGAAACTTTTGGAGAACCAGCTGAC
CCGGAAGGTGAAACTATTAGTGAAGTCAAATCGAGTCTAGTTCAGCACAAGGCATATTGT
GGTCCTGCTTTGCAGATGAAGGATTTCAACCGTAAGATTGAGGGGCCTTTTGTATCAGTT
TGGCTTCATAATGTACCTTGGGGAGGTGAAGATGCTCTCGCGGCACCTGATGCGAAGTTT
TCAGATGGTTACTTGGACTTAGTCGTGATAAAGGACTGTCCAAAGTTAACGTTGCTATCA
TTGATGACCGAGTTGAACAAAGGCAGCCATGTAAAATCACCACATGTCTTGTACTTCAAG
GTTAAAGCGTTTGTTCTGGAGCCTGGCACACAGTTAGATGATGGATCTAAAGAAGGGATT
ATAGATGTAGATGGTGAGGTTCTTGCAAGAGGTAAAGGAACTTACAAGTCAAATTACAAG
ACATTGATGACATATGACAAACTCTATATAAAAGTAGATCAAGGGTTGGCTACTGTTTTT
TCTCCTAGTACCATTTCTTAA

Peptide Sequence

PEP ID

Solyc03g006630.3.1
PEP Infomation

Sphingosine kinase, putative (AHRD V3.3 *** B9SFA5_RICCO)
Sequence

MGNTKPVITAAPILSDRVRVNGVETPVTFTAEEGILRWSENRLSIAKEVLGITVEDSKIK
IRAIKEKDDGGIICCGGNTKGTVRRSYNLEMLTEDSLRIWSQKLQEFIDSLGRPKRLFVL
VNPYGGKRSASKIFIDSVKPLLDDANIDYTVQETKYQLHAKEVAKSLDILRFDGVVCVSG
DGILVEVVNGLLEREDWDSAIKMPLGVVPAGTGNGMAKSLLDAVGLSCTASNATLAIIRG
HKQSLDVATISQGLNRFFSVLMLAWGLIADIDIESEKYRWMGSARIDYYAIQRIFRLRRY
NGCIKFVAAPGYETFGEPADPEGETISEVKSSLVQHKAYCGPALQMKDFNRKIEGPFVSV
WLHNVPWGGEDALAAPDAKFSDGYLDLVVIKDCPKLTLLSLMTELNKGSHVKSPHVLYFK
VKAFVLEPGTQLDDGSKEGIIDVDGEVLARGKGTYKSNYKTLMTYDKLYIKVDQGLATVF
SPSTIS*

Transcript Sequence

Transcript ID

Solyc03g006630.3.1
Transcript Infomation

Sphingosine kinase, putative (AHRD V3.3 *** B9SFA5_RICCO)
Sequence

CAGCTCGGCCATTTTCCAAACAAGGAAAAGGGAAATGTACAAAGAAACAACAAAAATCAA
GCGATGAATTCAAAGAGAAGCTTTTCTAAAATTATATATATATATAAAAAAATGAGCTTC
CATGAACAGAGAGTGAGAATAATCAACGCTAAATTATGGGTAACACGAAGCCCGTTATTA
CTGCAGCTCCGATTCTATCGGACCGGGTTCGGGTCAACGGAGTTGAAACTCCGGTGACGT
TTACGGCGGAGGAAGGTATACTCCGATGGAGTGAAAATCGCTTGTCGATTGCGAAAGAGG
TTCTCGGGATTACCGTCGAAGATTCGAAAATTAAAATTAGGGCTATTAAGGAGAAGGACG
ATGGTGGAATTATTTGCTGCGGCGGGAACACTAAAGGTACTGTGAGGAGGAGTTATAATT
TGGAAATGTTAACTGAGGATTCTCTTCGAATTTGGAGTCAAAAGCTTCAAGAGTTCATTG
ATTCACTTGGTCGGCCAAAGAGACTTTTTGTGTTAGTGAATCCTTATGGCGGAAAGAGAT
CTGCATCAAAGATTTTTATTGATAGTGTAAAGCCACTACTTGACGATGCAAATATCGACT
ATACAGTGCAAGAAACTAAATATCAGCTACATGCAAAGGAAGTTGCTAAATCATTGGATA
TTCTGAGATTTGATGGAGTTGTTTGTGTCAGCGGGGATGGAATTTTGGTTGAGGTAGTTA
ATGGCCTTCTTGAAAGAGAGGATTGGGATTCTGCAATAAAAATGCCTCTTGGAGTAGTAC
CTGCAGGCACCGGAAATGGCATGGCGAAGTCTCTTCTAGATGCTGTTGGTCTATCTTGTA
CTGCGTCCAATGCAACACTTGCTATTATTAGAGGACACAAGCAATCACTAGATGTAGCTA
CTATTTCACAGGGGCTGAACAGGTTTTTCAGTGTGCTGATGCTTGCCTGGGGACTTATAG
CTGATATTGATATCGAGTCTGAGAAGTATAGATGGATGGGCAGTGCTCGAATAGATTATT
ATGCAATACAACGAATATTCCGCCTCAGGAGGTACAATGGTTGTATAAAATTTGTGGCTG
CACCAGGCTATGAAACTTTTGGAGAACCAGCTGACCCGGAAGGTGAAACTATTAGTGAAG
TCAAATCGAGTCTAGTTCAGCACAAGGCATATTGTGGTCCTGCTTTGCAGATGAAGGATT
TCAACCGTAAGATTGAGGGGCCTTTTGTATCAGTTTGGCTTCATAATGTACCTTGGGGAG
GTGAAGATGCTCTCGCGGCACCTGATGCGAAGTTTTCAGATGGTTACTTGGACTTAGTCG
TGATAAAGGACTGTCCAAAGTTAACGTTGCTATCATTGATGACCGAGTTGAACAAAGGCA
GCCATGTAAAATCACCACATGTCTTGTACTTCAAGGTTAAAGCGTTTGTTCTGGAGCCTG
GCACACAGTTAGATGATGGATCTAAAGAAGGGATTATAGATGTAGATGGTGAGGTTCTTG
CAAGAGGTAAAGGAACTTACAAGTCAAATTACAAGACATTGATGACATATGACAAACTCT
ATATAAAAGTAGATCAAGGGTTGGCTACTGTTTTTTCTCCTAGTACCATTTCTTAAAAAC
ATTTTTAGATTTTTTTTTTTTTGTGATTAAACAAAGTCATGTATATACTATGATAATAAA
AAGGGTAAATAAAAGTAAGAATAAAGAAGTATCAGAACACTGGCCTGTTCTCGACAGACA
TGATTTTCTTCATACTTAAGGCTCAAATATGAAACCTCTGCTTAAGGGTGAAATAATATT
TTACTATTGCATCACAATCATGACGGTCATTAGAAGTGTTTTTGATATTTTATACAGGGT
AGTTATTATTTCTTTTCAAGTTTCAAACTATTAATGTTAGATTTTTGTTTGTATACGTAA
ATTTCACATCTCATCGACCAATATTCATTGATTTATTTAGAAATTTATTACGTGTCACTA
ACTTCGTCCGAGTATTTATAATTATTGAAGTCTCACAGGAAACACATGACTTTTTGTTTG
TGAAATCAAAGTACGGGTCGGGCCCTACATTTTTATACTAACCACACAAATCATTGTTAA
TAAATTGTTGGCACGAGAAGAAACAAGTGTTTTGATGTGCCAAAAATTTTGACTTGATAA
TCGAGATATTTTATATCCTTTCGTTTTGATTTATTTATCTTATTTTTTTAACATACTTTT
TTTCCGAGAACTTTTTAATTGA