Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc03g005750.3.1
CDS Infomation	RNA polymerase II degradation factor-like protein (DUF1296) (AHRD V3.3 *** AT1G29370.1)
Sequence	ATGACTAGCAGAGGAGGAGGAAAAAACAGTAACAATGGTGGAGGAATTGGAGTACAATCA ATTCCACCAGGTTCAAGAAAGATGGTACAAAGTTTAAAGGAAATAGTTAATTGTCCTGAA GCTGAGATCTATGCTATGCTTAAAGAGTGTAATATGGACCCTAACGAAGCTGTTAACAGG CTTCTTACTCAAGATCCTTTTCATGAGGTGAAGAGCAAGAGAGAAAAGAGAAAAGAGATT AAGGATCCAACTGAATCTAGGTCCTGGATCACTAGTAGCACTCCGAGCCGTGGCAGTAGG GCTGGTGGGGATCGATATGTTGGGCGTGGTGGATCAGAGTCTACCAAGCCCGCTCCTGCT TACAGGAAGGAGAGTGGATCACAAACAAACAACTTCTCTTCTACCCCTCTAATTGCAGGA GGCAACACAGATAGGAGACCAACTGCCATCAGTGATGCTGCAGGAAATGACAGTAAAAGA TTGGCACCAGCTGCAGTTGATGGTCATTCAGCTGCTTCACAGCCTTCTTCTGGATATCAA CCTACTTGGGGCGGGGTGCCAGGCCAAGTATCAATGGCTGATATTGTGAAGATGGGTAGG CCACAGAGTAAAGTGCCTAGTGTACCCAATATATCTGACAGTACTGCTGGTGTCAACCAA AACCATGATCAGGCACCACCTCCTTATGGCGCATCACATGGTAATATGCAGTTTTCTGAT GATCAGTCGACGGTTCCTGAGGTACATCAGGAACCAAGGGATAATTCATCTCAGAATCTT TCTGCAAATGATGAATGGCCTTCAATTGAGCAGCCATCAGCTGCTAGCCAACCTGCTGTC TCGGAGCCTCCCACTAATTCTGTGCCCCATCCTGATCCGTCTAACATGTCTTTTGACAGA GTTGATCATCAAACTCAGATAGATGAGTCTCAAGAGGCAGATGAAAGTGCTAATGAAAAT CTTGATTGTTCCCTTTCCAGTAGAAAGTTGCAGGAGGATAATGCTGATGGTACTTCTCTG TATGACAATGACCCGTACAGATATCAGCACCAGAATCACACTTTTGACCATCCACAAGTT GAAGATGTTAATGTCTCAGTTTCATCAGTTGCCGCGAACTTGCAACAACTAAGTGTAAAG GATGCAGCGGGTTTGCCATCTGATGGGGATAGTCCATCTGTTGTGATTCCAGACCATCTT CAAGTTCAAACAGCTGACTGCTCACACCTAAGTTTTGGTAGCTTTGGTGGTGTGTCCTTC TCTGGATCACTGGCCTCTGCCCCCGTGAAAACTAGCTTGGAAGATGCATCCAGAGATGCA GATAGTTCTTCAGTTGGGCACTTGGGCACCAGGGCCACTGAATACTATGGTGATGGTACT CTCAGAAATGAGGCTGATAGTAATTTATTCCACAGAAATAATGCAAATGCTGGAAATTAT GAACTGCCAGCAGCTTCACAACCAGAATCTCTGAAAGCAGAAGCTAGTGATGGGCATTAT TCATATCCGTCCTCTGCTGCTGGCTATTCATACGAAAGTGCTCAACAATTGAATGCAGCG TTTAGTCAGCCACAGACGAGTTCTCATATGCAAAATCTTGCTTCTTTCTCAAATGAGACA GTCTACACAAATTCTTTGCAGAGTGACATGTTGACTGCTAACGTGCATCCTGGTCGAGAG TCTGAGCTTTCATATTCTCCTTTTTCTACAACACAAGCAATGCCCACAAAATATGGCAAC TCAATTTCATCAATCAGTGGTTCAGCTATGCCTGAGGCTATGAAGACAGTTGGCTTTTCA TCAGCACAGCCTACTCAGCAGATGCTTTCTGGAAATAGTGTCGCCACAGGACCTGGCGTA CCACAACACCTAACTGTACACCAATATTCTCAACAAGCTGTTCCTATTGCCCCATATGGC AACATGATTAGTTATCCCTTTGTGCCTCAGAACTATTCATATATTCCATCTGCATTCCAA CAAGCATATCCTGGTAATAGCAGTTACCATCAGTCGCTTGCAGCAATGCTCCCCCAATAT AAGAATACCGTTTCTGCCAGCAGCTTGCCTCAATCTGCCACTATTCCTTCTGGATATGGT GCTTTTGGAAATACAACAAGTATCCCCGGGAACTTCCCAATCAACCCCCCTGCTGCTCCA TCTGGTACTAACTTAAGTTACGATGATGTATTAAGTGCTCAGTTCAAGGATACCAATCAT TTGATGTCTCTTCAGCAGAATGAGAACTCAGCTTTGTGGCTTCATGGACATGGTTCAAGA ACAATGCCAACTGTTCCCGCCAACACGTATTATGGCTTTCAGGGACAGAATCAGCAAACG GGCGGATTTAGGCAAGGCCAACAGCCATCACAGAGCTATGGATCTTTGGGGGGCTACCCA CATTTCTACAATTCTCAGGCTGGTATCTCGTTGGACCAACAACAGCAAGAAAACCTTCGA GATGGATCGTTGTCTGGTTCACAAGGCCAGCCAAAGCAGTCTCAACAACAGTTATGGCAA AACGGCTACTAA

Peptide Sequence

PEP ID	Solyc03g005750.3.1
PEP Infomation	RNA polymerase II degradation factor-like protein (DUF1296) (AHRD V3.3 *** AT1G29370.1)
Sequence	MTSRGGGKNSNNGGGIGVQSIPPGSRKMVQSLKEIVNCPEAEIYAMLKECNMDPNEAVNR LLTQDPFHEVKSKREKRKEIKDPTESRSWITSSTPSRGSRAGGDRYVGRGGSESTKPAPA YRKESGSQTNNFSSTPLIAGGNTDRRPTAISDAAGNDSKRLAPAAVDGHSAASQPSSGYQ PTWGGVPGQVSMADIVKMGRPQSKVPSVPNISDSTAGVNQNHDQAPPPYGASHGNMQFSD DQSTVPEVHQEPRDNSSQNLSANDEWPSIEQPSAASQPAVSEPPTNSVPHPDPSNMSFDR VDHQTQIDESQEADESANENLDCSLSSRKLQEDNADGTSLYDNDPYRYQHQNHTFDHPQV EDVNVSVSSVAANLQQLSVKDAAGLPSDGDSPSVVIPDHLQVQTADCSHLSFGSFGGVSF SGSLASAPVKTSLEDASRDADSSSVGHLGTRATEYYGDGTLRNEADSNLFHRNNANAGNY ELPAASQPESLKAEASDGHYSYPSSAAGYSYESAQQLNAAFSQPQTSSHMQNLASFSNET VYTNSLQSDMLTANVHPGRESELSYSPFSTTQAMPTKYGNSISSISGSAMPEAMKTVGFS SAQPTQQMLSGNSVATGPGVPQHLTVHQYSQQAVPIAPYGNMISYPFVPQNYSYIPSAFQ QAYPGNSSYHQSLAAMLPQYKNTVSASSLPQSATIPSGYGAFGNTTSIPGNFPINPPAAP SGTNLSYDDVLSAQFKDTNHLMSLQQNENSALWLHGHGSRTMPTVPANTYYGFQGQNQQT GGFRQGQQPSQSYGSLGGYPHFYNSQAGISLDQQQQENLRDGSLSGSQGQPKQSQQQLWQ NGY*

Transcript Sequence

Transcript ID	Solyc03g005750.3.1
Transcript Infomation	RNA polymerase II degradation factor-like protein (DUF1296) (AHRD V3.3 *** AT1G29370.1)
Sequence	TTCACAGTAGAGAGAGAAAGAGGAGAGAGAAAGAGCCATAACCGAGCCGTCACTGTGTGA ACTCTGTGTGTTTTTTCTTCCTTCACAGCAAAAAAAATCAACTGAAATAGATCTGAAAAT CGAAAATATTTAGTGGGTTTCTCTTATTTTTTCGATTTTTACAACTTTTTTCCCGATGAC TAGCAGAGGAGGAGGAAAAAACAGTAACAATGGTGGAGGAATTGGAGTACAATCAATTCC ACCAGGTTCAAGAAAGATGGTACAAAGTTTAAAGGAAATAGTTAATTGTCCTGAAGCTGA GATCTATGCTATGCTTAAAGAGTGTAATATGGACCCTAACGAAGCTGTTAACAGGCTTCT TACTCAAGATCCTTTTCATGAGGTGAAGAGCAAGAGAGAAAAGAGAAAAGAGATTAAGGA TCCAACTGAATCTAGGTCCTGGATCACTAGTAGCACTCCGAGCCGTGGCAGTAGGGCTGG TGGGGATCGATATGTTGGGCGTGGTGGATCAGAGTCTACCAAGCCCGCTCCTGCTTACAG GAAGGAGAGTGGATCACAAACAAACAACTTCTCTTCTACCCCTCTAATTGCAGGAGGCAA CACAGATAGGAGACCAACTGCCATCAGTGATGCTGCAGGAAATGACAGTAAAAGATTGGC ACCAGCTGCAGTTGATGGTCATTCAGCTGCTTCACAGCCTTCTTCTGGATATCAACCTAC TTGGGGCGGGGTGCCAGGCCAAGTATCAATGGCTGATATTGTGAAGATGGGTAGGCCACA GAGTAAAGTGCCTAGTGTACCCAATATATCTGACAGTACTGCTGGTGTCAACCAAAACCA TGATCAGGCACCACCTCCTTATGGCGCATCACATGGTAATATGCAGTTTTCTGATGATCA GTCGACGGTTCCTGAGGTACATCAGGAACCAAGGGATAATTCATCTCAGAATCTTTCTGC AAATGATGAATGGCCTTCAATTGAGCAGCCATCAGCTGCTAGCCAACCTGCTGTCTCGGA GCCTCCCACTAATTCTGTGCCCCATCCTGATCCGTCTAACATGTCTTTTGACAGAGTTGA TCATCAAACTCAGATAGATGAGTCTCAAGAGGCAGATGAAAGTGCTAATGAAAATCTTGA TTGTTCCCTTTCCAGTAGAAAGTTGCAGGAGGATAATGCTGATGGTACTTCTCTGTATGA CAATGACCCGTACAGATATCAGCACCAGAATCACACTTTTGACCATCCACAAGTTGAAGA TGTTAATGTCTCAGTTTCATCAGTTGCCGCGAACTTGCAACAACTAAGTGTAAAGGATGC AGCGGGTTTGCCATCTGATGGGGATAGTCCATCTGTTGTGATTCCAGACCATCTTCAAGT TCAAACAGCTGACTGCTCACACCTAAGTTTTGGTAGCTTTGGTGGTGTGTCCTTCTCTGG ATCACTGGCCTCTGCCCCCGTGAAAACTAGCTTGGAAGATGCATCCAGAGATGCAGATAG TTCTTCAGTTGGGCACTTGGGCACCAGGGCCACTGAATACTATGGTGATGGTACTCTCAG AAATGAGGCTGATAGTAATTTATTCCACAGAAATAATGCAAATGCTGGAAATTATGAACT GCCAGCAGCTTCACAACCAGAATCTCTGAAAGCAGAAGCTAGTGATGGGCATTATTCATA TCCGTCCTCTGCTGCTGGCTATTCATACGAAAGTGCTCAACAATTGAATGCAGCGTTTAG TCAGCCACAGACGAGTTCTCATATGCAAAATCTTGCTTCTTTCTCAAATGAGACAGTCTA CACAAATTCTTTGCAGAGTGACATGTTGACTGCTAACGTGCATCCTGGTCGAGAGTCTGA GCTTTCATATTCTCCTTTTTCTACAACACAAGCAATGCCCACAAAATATGGCAACTCAAT TTCATCAATCAGTGGTTCAGCTATGCCTGAGGCTATGAAGACAGTTGGCTTTTCATCAGC ACAGCCTACTCAGCAGATGCTTTCTGGAAATAGTGTCGCCACAGGACCTGGCGTACCACA ACACCTAACTGTACACCAATATTCTCAACAAGCTGTTCCTATTGCCCCATATGGCAACAT GATTAGTTATCCCTTTGTGCCTCAGAACTATTCATATATTCCATCTGCATTCCAACAAGC ATATCCTGGTAATAGCAGTTACCATCAGTCGCTTGCAGCAATGCTCCCCCAATATAAGAA TACCGTTTCTGCCAGCAGCTTGCCTCAATCTGCCACTATTCCTTCTGGATATGGTGCTTT TGGAAATACAACAAGTATCCCCGGGAACTTCCCAATCAACCCCCCTGCTGCTCCATCTGG TACTAACTTAAGTTACGATGATGTATTAAGTGCTCAGTTCAAGGATACCAATCATTTGAT GTCTCTTCAGCAGAATGAGAACTCAGCTTTGTGGCTTCATGGACATGGTTCAAGAACAAT GCCAACTGTTCCCGCCAACACGTATTATGGCTTTCAGGGACAGAATCAGCAAACGGGCGG ATTTAGGCAAGGCCAACAGCCATCACAGAGCTATGGATCTTTGGGGGGCTACCCACATTT CTACAATTCTCAGGCTGGTATCTCGTTGGACCAACAACAGCAAGAAAACCTTCGAGATGG ATCGTTGTCTGGTTCACAAGGCCAGCCAAAGCAGTCTCAACAACAGTTATGGCAAAACGG CTACTAAATCTTACTGCCTCCCTTGTTTTTCTGTTCTTTCTTTTTTTGGGGTCTTGTAAT GAGTGTGAAAGTGGCCTTTCCAGCTCTCTCTGTTGAAATAACCCTCGTTCACGATCCCTG AAGAAACTTGACTGGGTGCTGCCCTGTGCCATGACTCTGTACTTTACGTGTTTATCTCAG ATTTAAATGTAACGTAGGTAATGTCTGAGTTAACACAGTGCTCTAGTCGTCTCGTCTGTG TTTTTTCTTTTAGCTCTTGTTTAACACGGTTAACCCCCCTTTTCGTCGTTTTTAATCTAT AGTTGCTAGTGTTTTTTTCCCAATAGTAATCTATTGCATTATAATCCCACTTTTCTACTT TCATGTCTAGTCTCCATAACATAAATGTTTTGAAATATTGGTTAGTTCAATGTGGTTAT