Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g094100.3.1
CDS Infomation

Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *-* KTNA1_ARATH)
Sequence

ATGGCGGGAAAGGAGGACAGCAACAAAAATACGGCACCGAATTCGAAATCGGAGAAAATG
GAGGACGAAAAATCGGAGGCATCATGGAGGAAAGAAGTTGACACCAATGTCAAGAGGCTT
CATTCCATGCTATTTGGAGCAGAAGTAGCTCTCAAAAGTAAGGATTTCAGTTCTGCAACG
GTACTTGGACTAGGACTTATCGGATTCCTCGATTCCCATTCTCATTCAGACGCCGACGAG
GCTTTCATTCGTCCTATTCGTTGTGAAGCTATGTCAAATTTTGATTCTGCTCGAAGCTCC
CTCATAACTGAATCCGATCGCCACGCTTTTGAACAAGCAGGGAGAGATCCAGGCTGCATA
TTTGCCCAAGGAAAAAATATTGACATTGAGAAGATTAAGCAGTCTAAATACTTTCTTTCT
CTTTGTCAGCAACATGAAGACACAGCTAAAGGTGAACAGGGAAATCAATTAAACAGACAT
GCCAATGTGGGTAGCCAAACCTTGAAAACACCTGTACATACTAGTCCAAGAGATTTCTCC
TTGATAAAAAATAGAAGCTTTGCAAATGATAGTAGCCCAGAGGTTCTTCCTGTTGATAGG
TTTCACCCAAAGCATAGCTACCCAAAGCATCAAACTGTGGACATTAAAGATGGAGAGGAA
GAAAGAACCTGTGTCAATGGTTCCAAAACAAGACGGTTGTACAGGGAAAGCAATGTCTCT
AGAGATGAAAACATTTCATCCCCCTTGTGCACTGAAGAAGCTGATGTTGATGCTTCTCCA
AATGGATTTGTCACTGCTAGAGCAAAACTGGAAATGGACACAAGACATAAGCGAGGGTTG
AGTAGATCACCAAGTGCTTCAATCTCCCCACAAAACGATAACACCTTGATGAGCAAAGGC
TGTGGAGTCAGGTCCTATGGTTTTCCACGCCGTGGCATACGGGGCAATTTTGTTCCTCCT
ATCAGAGGTAGTGGTGGCAATAATGTAGGCAATGTTACTTCACGCACTTCTGGGAAAGGA
GAAGATATACTTGATGATTCAACAAGGAGATGTTTGGAAATGTTAGTTGGTCCTGATGGT
GAGCTTCCTGAGAAATTGAGGAATATAGAGCCTCGACTTATTGAGCATATCAGCAATGAG
ATTATGCACCGGGATCCCAATGTGCGGTGGAATGACATTGCTGGCCTGGAACATGCTAAA
AAATGTGTGACTGAGATGGTCATCTGGCCATTATTACGTCCAGACATATTCAAAGGCTGC
CGATCTCCAGGTCGAGGTCTTCTTCTGTTTGGTCCACCAGGAACTGGCAAAACAATGATA
GGGAAAGCTATTGCTGGTGAGGCAAAAGCAACCTTCTTTTACATATCTGCCAGCTCTTTG
ACAAGCAAGTGGATTGGAGAGGGGGAGAAGCTGGTGAGGGCACTTTTTGGAGTGGCCAGT
TGTCGTCAACCAGCTGTTATTTTCGTTGATGAAATAGATTCTCTGTTGTCTCAGCGCAAG
TCAGAAGGTGAACATGAATCTAGTAGGCGCCTGAAGACACAATTTCTGATCGAGATGGAA
GGCTTTGACAATGTGAGCGAACAAATTCTTCTTATAGGTGCAACAAACAGGCCCCAAGAG
CTTGATGAGGCTGCAAGGAGACGGCTTACTAAAAGACTTTATGTTCCACTTCCTTCCTCA
GAAGCACGAGCTTGGATTGCCAAGAGTCTATTGGAGAAGGATGGGTTGTTTAAGCTTTCA
GATGACGATATTGTCTCTATTTGCAAATTTACGGAAGGGTATTCTGGGTCTGACATGAAG
AATTTAGTGAAGGATGCTTCCATGGGTCCATTGAGGGAAGCTCTAAGGCACGGTATTGAA
ATTACAAAGCTAAAGAAGGAGGATATGAGGCCAGTAACTCTTCAGGACTTTGAGAGTGCA
TTACAAGAGGTAAGGCCTTCTGTGTCTTTGAATGAACTAGGTGCATACGAGGACTGGAAC
AAACAGTTTGGAAGCTTAGCACTTTAA

Peptide Sequence

PEP ID

Solyc02g094100.3.1
PEP Infomation

Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *-* KTNA1_ARATH)
Sequence

MAGKEDSNKNTAPNSKSEKMEDEKSEASWRKEVDTNVKRLHSMLFGAEVALKSKDFSSAT
VLGLGLIGFLDSHSHSDADEAFIRPIRCEAMSNFDSARSSLITESDRHAFEQAGRDPGCI
FAQGKNIDIEKIKQSKYFLSLCQQHEDTAKGEQGNQLNRHANVGSQTLKTPVHTSPRDFS
LIKNRSFANDSSPEVLPVDRFHPKHSYPKHQTVDIKDGEEERTCVNGSKTRRLYRESNVS
RDENISSPLCTEEADVDASPNGFVTARAKLEMDTRHKRGLSRSPSASISPQNDNTLMSKG
CGVRSYGFPRRGIRGNFVPPIRGSGGNNVGNVTSRTSGKGEDILDDSTRRCLEMLVGPDG
ELPEKLRNIEPRLIEHISNEIMHRDPNVRWNDIAGLEHAKKCVTEMVIWPLLRPDIFKGC
RSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVAS
CRQPAVIFVDEIDSLLSQRKSEGEHESSRRLKTQFLIEMEGFDNVSEQILLIGATNRPQE
LDEAARRRLTKRLYVPLPSSEARAWIAKSLLEKDGLFKLSDDDIVSICKFTEGYSGSDMK
NLVKDASMGPLREALRHGIEITKLKKEDMRPVTLQDFESALQEVRPSVSLNELGAYEDWN
KQFGSLAL*

Transcript Sequence

Transcript ID

Solyc02g094100.3.1
Transcript Infomation

Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *-* KTNA1_ARATH)
Sequence

ATTCACGACGAGGGAAAATGGCGGGAAAGGAGGACAGCAACAAAAATACGGCACCGAATT
CGAAATCGGAGAAAATGGAGGACGAAAAATCGGAGGCATCATGGAGGAAAGAAGTTGACA
CCAATGTCAAGAGGCTTCATTCCATGCTATTTGGAGCAGAAGTAGCTCTCAAAAGTAAGG
ATTTCAGTTCTGCAACGGTACTTGGACTAGGACTTATCGGATTCCTCGATTCCCATTCTC
ATTCAGACGCCGACGAGGCTTTCATTCGTCCTATTCGTTGTGAAGCTATGTCAAATTTTG
ATTCTGCTCGAAGCTCCCTCATAACTGAATCCGATCGCCACGCTTTTGAACAAGCAGGGA
GAGATCCAGGCTGCATATTTGCCCAAGGAAAAAATATTGACATTGAGAAGATTAAGCAGT
CTAAATACTTTCTTTCTCTTTGTCAGCAACATGAAGACACAGCTAAAGGTGAACAGGGAA
ATCAATTAAACAGACATGCCAATGTGGGTAGCCAAACCTTGAAAACACCTGTACATACTA
GTCCAAGAGATTTCTCCTTGATAAAAAATAGAAGCTTTGCAAATGATAGTAGCCCAGAGG
TTCTTCCTGTTGATAGGTTTCACCCAAAGCATAGCTACCCAAAGCATCAAACTGTGGACA
TTAAAGATGGAGAGGAAGAAAGAACCTGTGTCAATGGTTCCAAAACAAGACGGTTGTACA
GGGAAAGCAATGTCTCTAGAGATGAAAACATTTCATCCCCCTTGTGCACTGAAGAAGCTG
ATGTTGATGCTTCTCCAAATGGATTTGTCACTGCTAGAGCAAAACTGGAAATGGACACAA
GACATAAGCGAGGGTTGAGTAGATCACCAAGTGCTTCAATCTCCCCACAAAACGATAACA
CCTTGATGAGCAAAGGCTGTGGAGTCAGGTCCTATGGTTTTCCACGCCGTGGCATACGGG
GCAATTTTGTTCCTCCTATCAGAGGTAGTGGTGGCAATAATGTAGGCAATGTTACTTCAC
GCACTTCTGGGAAAGGAGAAGATATACTTGATGATTCAACAAGGAGATGTTTGGAAATGT
TAGTTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATATAGAGCCTCGACTTATTG
AGCATATCAGCAATGAGATTATGCACCGGGATCCCAATGTGCGGTGGAATGACATTGCTG
GCCTGGAACATGCTAAAAAATGTGTGACTGAGATGGTCATCTGGCCATTATTACGTCCAG
ACATATTCAAAGGCTGCCGATCTCCAGGTCGAGGTCTTCTTCTGTTTGGTCCACCAGGAA
CTGGCAAAACAATGATAGGGAAAGCTATTGCTGGTGAGGCAAAAGCAACCTTCTTTTACA
TATCTGCCAGCTCTTTGACAAGCAAGTGGATTGGAGAGGGGGAGAAGCTGGTGAGGGCAC
TTTTTGGAGTGGCCAGTTGTCGTCAACCAGCTGTTATTTTCGTTGATGAAATAGATTCTC
TGTTGTCTCAGCGCAAGTCAGAAGGTGAACATGAATCTAGTAGGCGCCTGAAGACACAAT
TTCTGATCGAGATGGAAGGCTTTGACAATGTGAGCGAACAAATTCTTCTTATAGGTGCAA
CAAACAGGCCCCAAGAGCTTGATGAGGCTGCAAGGAGACGGCTTACTAAAAGACTTTATG
TTCCACTTCCTTCCTCAGAAGCACGAGCTTGGATTGCCAAGAGTCTATTGGAGAAGGATG
GGTTGTTTAAGCTTTCAGATGACGATATTGTCTCTATTTGCAAATTTACGGAAGGGTATT
CTGGGTCTGACATGAAGAATTTAGTGAAGGATGCTTCCATGGGTCCATTGAGGGAAGCTC
TAAGGCACGGTATTGAAATTACAAAGCTAAAGAAGGAGGATATGAGGCCAGTAACTCTTC
AGGACTTTGAGAGTGCATTACAAGAGGTAAGGCCTTCTGTGTCTTTGAATGAACTAGGTG
CATACGAGGACTGGAACAAACAGTTTGGAAGCTTAGCACTTTAAGAGCTAGAGGAATGAT
TACATCAGAGAAAATAATCTACACGAGGGATATGTAAATTCGTCTGCTACCTAAATAACC
CATCCAGATCAAGACGAATCTTCCATATGCCAAACAATTTAGCATCCTGTGTGTTTTGTC
GAGGGGCGGGAGAAGGAAATAGATCATAAATAAAAGTGATATCAGCATAAG