Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g093750.3.1
CDS Infomation

C3H4 type zinc finger protein (DUF23) (AHRD V3.3 *** AT5G40720.3)
Sequence

ATGGCTCAAATTCCAATCAAACATCGTAAAAAACATGTAGCAGTTCGAAGATCTTTCTTC
TGGTGTATCCTCTGCTTTGCTGCCTTCACTTTCTCTTCTCTACTATTTCAAGGGTTTCAT
CAATGGCGGCCGGCGACAACCACAGCCCTAACCGCTGTTAAGCCAATTATACAAACCGTC
GAATTCCCGGACGAGACAGTTGTTTTCCTAAAATACCCTCCTTCAACTCCCTTATTCACA
AAACATGACCTATACTGCCTCTACCTTGATCCTAACTCTTCTCAACCTCCTGAATCAGTT
GAAAACGATGAATTATTGGCCCAACAGCTCGTTCGATGTCCCCTGGTTAAGCCACGTGGA
GTCCTGACGTCACTTTTCGTCAAGTCTACCGGTTACACCCTCTCCATTGGACCATCACGT
CGGTGGAATTCGTTGGCCTATGAGGCCATGATCGATCGCGATAACACGACCATAGTGTTT
GTTAAAGGGTTTAATCTTCGTGGTGGAAGACAATCGCACGCTTCAAAATTCAAGTGTGTT
TATGGTTGGGATGTTAAGAATCCCAAACTTGTGTTACAATCAGATGTTGTATCCATTGCT
CAAGAAGTTGTTCGATGTAATACCCCAGTGAGCATACTGAATAATCCAGAGAGGTTTATT
GGTACTAGTAACATGCCCATTAAGGTTTCTGTTAGAATGGTTGGTAAGGAACCTTTAGAC
TCTATAGCGAGTCCTAAACGCCGTCTGCAGCCTGACTTTCCAGCTCAAAAACAGCACAAC
ATGTGTGTATGCACAATGTTAAGAAACCAGGCCAGCTTCTTGAAAGAGTGGATCATGTAC
CATACTAGAATCGGAGTACAGCGTTGGTTCATTTATGATAATAACAGCTTGGACGATATT
GATGATGTCATTAAGCTATTATCGAACATAAATGTGACACGACATGTTTGGCCTTGGATC
AAGACTCAAGAGGCAGGTTTTGCTCATTGTGCATTACGAGCTAGAGATGTGTGTGAATGG
GTTGGTTTTATGGATGTGGATGAGTTCTTCCACTTGCCTACTGGTATGTCACTGCTTGAC
ATATTAAGAAACCAATCAAGGAGTAATAGTAAAGTTGCTGAGTTGCGGGTGTCATGTCAT
AATTTTGGACCATCTGGTCTCAAACATGTCCCGACACAAGGGGTCACCATGGGGTACAAT
TGCAGGATGATTGCACCTGAGAGGCATAAGAGTATTGTGAAACCTGAAGCATTGAATTCA
ACATTAATCAATGTGGTTCACCATTTTCATTTAAAGTCTGAGTTTAGATATGCCAATATG
GATAGAAATGTGCTTGTGATTAACCATTACAAGTATCAAGTTTGGGATGTCTTCAAGGAG
AAGTTCTACAGGAGGGTGGCTACTTATGTTTCTGATTGGCAACAACAGAGAAATGTTGGG
TCCAGGGATCGTGCCCCTGGTTTAGGGACACGAGCCGTTGAACCACCAGATTGGTCTAGT
CGATTTTGTGAAGTTACTGACACTGGCCTAAAAGATCGAGTAGCAGAGATGTTCACCGAC
CCAAACACTGGCAAGTTACCCTGGCAAAAATCACTGACATGA

Peptide Sequence

PEP ID

Solyc02g093750.3.1
PEP Infomation

C3H4 type zinc finger protein (DUF23) (AHRD V3.3 *** AT5G40720.3)
Sequence

MAQIPIKHRKKHVAVRRSFFWCILCFAAFTFSSLLFQGFHQWRPATTTALTAVKPIIQTV
EFPDETVVFLKYPPSTPLFTKHDLYCLYLDPNSSQPPESVENDELLAQQLVRCPLVKPRG
VLTSLFVKSTGYTLSIGPSRRWNSLAYEAMIDRDNTTIVFVKGFNLRGGRQSHASKFKCV
YGWDVKNPKLVLQSDVVSIAQEVVRCNTPVSILNNPERFIGTSNMPIKVSVRMVGKEPLD
SIASPKRRLQPDFPAQKQHNMCVCTMLRNQASFLKEWIMYHTRIGVQRWFIYDNNSLDDI
DDVIKLLSNINVTRHVWPWIKTQEAGFAHCALRARDVCEWVGFMDVDEFFHLPTGMSLLD
ILRNQSRSNSKVAELRVSCHNFGPSGLKHVPTQGVTMGYNCRMIAPERHKSIVKPEALNS
TLINVVHHFHLKSEFRYANMDRNVLVINHYKYQVWDVFKEKFYRRVATYVSDWQQQRNVG
SRDRAPGLGTRAVEPPDWSSRFCEVTDTGLKDRVAEMFTDPNTGKLPWQKSLT*

Transcript Sequence

Transcript ID

Solyc02g093750.3.1
Transcript Infomation

C3H4 type zinc finger protein (DUF23) (AHRD V3.3 *** AT5G40720.3)
Sequence

TCTGAAAAATGCTCTTTCATTCTACTGCAACAACCAAAATTTTTTAAAAAAAGCCCATGG
AAATGGAATTTTGTAGAAAGAGAGTGAAAGGAACAAGTGAAGTGGCATGATGTTTCTTTT
TCTTATTCTTTATGTATTATTAGGTTAGAGTTGAACTTAGTTATGTGGGGGAGGTTTCTA
GCAAACCATAACAACTGATTAGAAGGGTTTTTATTTGAAGATGAAAAGAGAATAATAATT
GAAGTTGAATGAAAAAGAAGGAAGTTGCAACAAAGTGGGTGACCTCGTAACTTGTTTCTT
TATTGGAACAAGACTGCTTGACCACGTACAACTCTCAAATACTAGCAATATATGCTCAAA
AACTGAATAGCACAAGTCGATGATGAAACAGAGACTGCTGAATTTGAACCATTAAAATCG
TGGGTATGGCTCAAATTCCAATCAAACATCGTAAAAAACATGTAGCAGTTCGAAGATCTT
TCTTCTGGTGTATCCTCTGCTTTGCTGCCTTCACTTTCTCTTCTCTACTATTTCAAGGGT
TTCATCAATGGCGGCCGGCGACAACCACAGCCCTAACCGCTGTTAAGCCAATTATACAAA
CCGTCGAATTCCCGGACGAGACAGTTGTTTTCCTAAAATACCCTCCTTCAACTCCCTTAT
TCACAAAACATGACCTATACTGCCTCTACCTTGATCCTAACTCTTCTCAACCTCCTGAAT
CAGTTGAAAACGATGAATTATTGGCCCAACAGCTCGTTCGATGTCCCCTGGTTAAGCCAC
GTGGAGTCCTGACGTCACTTTTCGTCAAGTCTACCGGTTACACCCTCTCCATTGGACCAT
CACGTCGGTGGAATTCGTTGGCCTATGAGGCCATGATCGATCGCGATAACACGACCATAG
TGTTTGTTAAAGGGTTTAATCTTCGTGGTGGAAGACAATCGCACGCTTCAAAATTCAAGT
GTGTTTATGGTTGGGATGTTAAGAATCCCAAACTTGTGTTACAATCAGATGTTGTATCCA
TTGCTCAAGAAGTTGTTCGATGTAATACCCCAGTGAGCATACTGAATAATCCAGAGAGGT
TTATTGGTACTAGTAACATGCCCATTAAGGTTTCTGTTAGAATGGTTGGTAAGGAACCTT
TAGACTCTATAGCGAGTCCTAAACGCCGTCTGCAGCCTGACTTTCCAGCTCAAAAACAGC
ACAACATGTGTGTATGCACAATGTTAAGAAACCAGGCCAGCTTCTTGAAAGAGTGGATCA
TGTACCATACTAGAATCGGAGTACAGCGTTGGTTCATTTATGATAATAACAGCTTGGACG
ATATTGATGATGTCATTAAGCTATTATCGAACATAAATGTGACACGACATGTTTGGCCTT
GGATCAAGACTCAAGAGGCAGGTTTTGCTCATTGTGCATTACGAGCTAGAGATGTGTGTG
AATGGGTTGGTTTTATGGATGTGGATGAGTTCTTCCACTTGCCTACTGGTATGTCACTGC
TTGACATATTAAGAAACCAATCAAGGAGTAATAGTAAAGTTGCTGAGTTGCGGGTGTCAT
GTCATAATTTTGGACCATCTGGTCTCAAACATGTCCCGACACAAGGGGTCACCATGGGGT
ACAATTGCAGGATGATTGCACCTGAGAGGCATAAGAGTATTGTGAAACCTGAAGCATTGA
ATTCAACATTAATCAATGTGGTTCACCATTTTCATTTAAAGTCTGAGTTTAGATATGCCA
ATATGGATAGAAATGTGCTTGTGATTAACCATTACAAGTATCAAGTTTGGGATGTCTTCA
AGGAGAAGTTCTACAGGAGGGTGGCTACTTATGTTTCTGATTGGCAACAACAGAGAAATG
TTGGGTCCAGGGATCGTGCCCCTGGTTTAGGGACACGAGCCGTTGAACCACCAGATTGGT
CTAGTCGATTTTGTGAAGTTACTGACACTGGCCTAAAAGATCGAGTAGCAGAGATGTTCA
CCGACCCAAACACTGGCAAGTTACCCTGGCAAAAATCACTGACATGACGCCGCAACATGA
AATTATTTCATATCAGTTTTTGACTTTGAGGATCTAATTTCTTTTGCTATTTTATTTGTA
CATGAAATAGTCCATATATTCTTTTTGTACATCAATTTACGTCACAACACAAAGGTAATA
TGAAAATGGAAGTTGAATGTTCAATGTATCTGGTGAAAGTCAAAACCATTTTTTAGTATA
TGTAACGTTGCATTTCTTTGTGATGCAATGAAAATTATTATAAAAGCCAATAATTGTGCA
AAGACAGAATGTAAGTAGGTACTGGGACATGTGATGACTTCTTTCTCATATTATAAGCTC
TTCAATTCCTTCATCCAAAATTTCTGGAAGGCAAAATAATGAATTATTCTTCATATCCAG
ATTATTATAGTATTATCTTATTC