Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g092560.3.1
CDS Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** A0A061DGZ5_THECC)
Sequence

ATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTGGATT
TTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTG
CACAAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAAT
GAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAA
CTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTG
CTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTG
GAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACA
ATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGA
TGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGA
GCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGG
TCTGAAGATATAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCGATGATG
GCAAGGGGATTCAAGCGGTATGCACTTGGACCAATATTAATGCTCTACGCACAGAAGTCT
CTTCGAGGTTTGGAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAGCAAGAACAT
GAAAAAAGAGTTGTTTTAGAAACCATCGTTAGTCTTCTGCCAAAGGAGAAAAATGCATTG
TCCGTTAGCTTTCTGTCAATGCTGCTCCGAGCTGCAATATATCTGGAGACCACGATAGCT
TGCAGGCTTGACCTGGAGAAGAGGATGGCATTGCAGCTTGGACAGGCTGTATTGGATGAT
CTGTTAATTCCTTCAAGTTCCTTCACAGGAGACACCTTGTATGATGTTGAAACCGTGCAG
CGTATTATGATGAATTTCCTTGACAATGAGGAGGGAAATCGATTAGGAGATGAAGAGTAT
CATGTGTCTCCTTCATTAAGTGACATGGAGCGGGTTGGAAAACTTATGGAAAATTACCTT
GCTGAAATAGCCTCTGACCGTAATCTGTCTGTCACAAACTTCATTAATCTTGCTGAAGTC
ATCCCAGAGCAAGCAAGGATCACTGAAGATGGGATGTACAGGGCCATTGACATTTATTTG
AAGGCACATCCAGCTCTAAGCGACATAGAAAGAAAAAAGGTTTGTGGTATTATGGACTGT
CAAAAACTATCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATGATAGGCTCCCTGTTCAG
ACAGTTGTGCAAGTACTTTACTACGAGCAGCAACGTCTTCACAATGGGAGCCAGCTTGTA
GCAACTGAACCTCCTGCTCTTGTTTCTTCCAAAAGGGATGATCAGTTCTCTACTAACCCT
GTTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGCTG
AAAATGAAGACGAGGTTGATAGAAATTGAAAAACCAAAGTCAAATACATCAGCCTCAAGC
AGCCCTTTGGTCATTACTCAGCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAAC
TTCATGAGCTCAGTATCGAAAAAGCTCGGAAGATTTATTCGAGCGGATGGACTCACGCAT
GGCAAAGCCCGAAATAAACCAAGTAAAGATAGACGTCATTCCATATCGTGA

Peptide Sequence

PEP ID

Solyc02g092560.3.1
PEP Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** A0A061DGZ5_THECC)
Sequence

MTTKKDELLFSAMKRTSDWIFSQEIPSDVTVNAGGTSFTLHKFPLVSKSGYIRKLISESN
EADVSTIDIPDIPGGGEAFELAAKFCYGINFEISTENIALLRCVAEYLEMTEDYAVANLV
ERTEAYFNEVAITSLAGAVTILRSSENLLPIAEKVKLVSRCIDTIAYTACKDNQFSTSGR
AEAGINGSTFSNPKPIVDWWSEDITVLRIDFFQRVLIAMMARGFKRYALGPILMLYAQKS
LRGLEIFGKGRKKIEPKQEHEKRVVLETIVSLLPKEKNALSVSFLSMLLRAAIYLETTIA
CRLDLEKRMALQLGQAVLDDLLIPSSSFTGDTLYDVETVQRIMMNFLDNEEGNRLGDEEY
HVSPSLSDMERVGKLMENYLAEIASDRNLSVTNFINLAEVIPEQARITEDGMYRAIDIYL
KAHPALSDIERKKVCGIMDCQKLSREACAHAAQNDRLPVQTVVQVLYYEQQRLHNGSQLV
ATEPPALVSSKRDDQFSTNPVSDEVSSLKRENQELKFELLKMKTRLIEIEKPKSNTSASS
SPLVITQPSAGKPPLPRKSNFMSSVSKKLGRFIRADGLTHGKARNKPSKDRRHSIS*

Transcript Sequence

Transcript ID

Solyc02g092560.3.1
Transcript Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** A0A061DGZ5_THECC)
Sequence

TTTATTTTTTTTTAAAAAAAAGCAAAATCTTATTGCAAAGTTAAAAATAGAATAAAAGTT
ATTTTCTAGAAAAATAACAAAGAAGAATGACATTTTGATGGGAAAACAAATTCCACTAGT
GGTATTGCCTCAGCCATAGGCTCCCATTCCACCCTACCCTACTCTTACTTTGTCTAAACT
ATATACAAAACTTTTAAAGTAATAAAGTATTTTTTTACTTGCTTACATACCCCATTTGAC
ATTTCTCATGGGCCATGGCCAAGCGGGTTGTTGGTCTTCTTCTTTGTTTCTCTTTTTGTT
GGTCTTCGCGGTCACCTTTCACGGCTTGGACTTGGGCTATTTCAGGAGTTGCATTTGGGC
TTAGTTCTTTTGCGTAATAAAACGGGCTTCTCAAAATTAGCCAGCCCATCAGAAAATTCA
TACCGTATACGCCTTGGGTTTTATCGATGTAAACAATAGGCGGATTTGATTGAAATTTAA
AATATTAAAATGGATAAAATAGTTTTATATTAAAAATTTGATACATCGTTATTGAAACTA
GAGATTGAATATGAAAGAAATATCAAAAAAATTCCACCATTTTTGGGTAAAAATTATTGC
GTCAAGGTTGGAGATGCCAATAATGTCGTGGATAATGATCAAATCAAACTATAAAAATCT
ACATCTCTGGTTTATCTTTTTTATTTATTTTTGGTAATAAGTGCAAGAATTATTCCAAAC
GTACGGTTAGTATTACGCCTCTTAACTCTATCTCACTCTGATTAGCAAAATCCAATCTGT
TTTGTCCCATTTCACGCCCCACAATAGGCATACCCACTTAGTTGTCACTTTCATTTACAA
TAATAGCATGATTTCTATGGTTTTGCTTATCTCAGTTTTGGATAACAATGGATTCCTCCA
ATACAAAATACATTTTTTCAGAGACCTACTGCTACTGTTAACAATAATATGACCACTAAA
AAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTGGATTTTCTCCCAAGAG
ATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAGTTCCCA
TTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTT
TCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAG
TTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTG
GCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAG
GCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCA
TCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACA
ATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGT
ATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGGTCTGAAGATATA
ACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCGATGATGGCAAGGGGATTC
AAGCGGTATGCACTTGGACCAATATTAATGCTCTACGCACAGAAGTCTCTTCGAGGTTTG
GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAGCAAGAACATGAAAAAAGAGTT
GTTTTAGAAACCATCGTTAGTCTTCTGCCAAAGGAGAAAAATGCATTGTCCGTTAGCTTT
CTGTCAATGCTGCTCCGAGCTGCAATATATCTGGAGACCACGATAGCTTGCAGGCTTGAC
CTGGAGAAGAGGATGGCATTGCAGCTTGGACAGGCTGTATTGGATGATCTGTTAATTCCT
TCAAGTTCCTTCACAGGAGACACCTTGTATGATGTTGAAACCGTGCAGCGTATTATGATG
AATTTCCTTGACAATGAGGAGGGAAATCGATTAGGAGATGAAGAGTATCATGTGTCTCCT
TCATTAAGTGACATGGAGCGGGTTGGAAAACTTATGGAAAATTACCTTGCTGAAATAGCC
TCTGACCGTAATCTGTCTGTCACAAACTTCATTAATCTTGCTGAAGTCATCCCAGAGCAA
GCAAGGATCACTGAAGATGGGATGTACAGGGCCATTGACATTTATTTGAAGGCACATCCA
GCTCTAAGCGACATAGAAAGAAAAAAGGTTTGTGGTATTATGGACTGTCAAAAACTATCT
CGAGAAGCTTGTGCTCATGCTGCTCAAAATGATAGGCTCCCTGTTCAGACAGTTGTGCAA
GTACTTTACTACGAGCAGCAACGTCTTCACAATGGGAGCCAGCTTGTAGCAACTGAACCT
CCTGCTCTTGTTTCTTCCAAAAGGGATGATCAGTTCTCTACTAACCCTGTTTCAGACGAG
GTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGCTGAAAATGAAGACG
AGGTTGATAGAAATTGAAAAACCAAAGTCAAATACATCAGCCTCAAGCAGCCCTTTGGTC
ATTACTCAGCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCA
GTATCGAAAAAGCTCGGAAGATTTATTCGAGCGGATGGACTCACGCATGGCAAAGCCCGA
AATAAACCAAGTAAAGATAGACGTCATTCCATATCGTGATTTCAGCTAGCTATATTTCCA
TTATTGTCAAAATATGGTACATATTGGAATTTTTCAATTTAATCATGCAAGTTTGTATGG
TAAAGTATATATTTTTTCGTGCTTTATCCAGAAATATTATTTATGAAAGATTGTAATATT
TGATTTCTCTTATATACCATGAAAAAATATTTGCAATTCTGACAGGATTCTTTGTTTTAC
ATCCAATTCACTTAAAATAACTATGTATTA