Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc02g089800.3.1
CDS Infomation	Nuclear matrix constituent-like protein 1 (AHRD V3.3 *** E5GCT1_CUCME)
Sequence	ATGGATCAAGAAGAGCTAATTGAGAAGGTCTCCAAGCTCGAAAATGAGCTTTTTGACTAC CAATACAATATGGGTCTTATCCTGCTTGAGAAGAAGGAGTGGTCTTCTAAGTTTGAAGAA ATCAAGCAAACCTTAGAAGAATCAAATGAGGCCTATAGAAGAGAACAAGCAGCTCATTTA ATTGCTATATCTGAAGTGGAGAAACGGGAAGAGAATTTAAGGAAGGCGCTTGGAGTCGAG AAGCAATTTGCACGAGAGCTAGAGAAAGAGTTGCGTGAGATGCGCTTGGAGTATGCGGAG ATCAAATATACTGCTGATTCAAAATTGGCAGAGGCAAATGCTCTGGCTACTAGTGTTGAA GAGAAATCATTAGAGGTAGAAGCAAAGTTGCGTGCAGCTGACGCCAAGCTTGCTGAGGTG AACAGAAGGAGCTCTGAAGTTGAGAGGAAGCTTAATGAAGTCTATGCCCAAGAAAATTCA CTTCGAAGAGAACGGTCATCTTTCAATGCAGAGCGTGAAGCTTATGAGACTAATTTATCC AGACAAAGAGAGGACTCACAAGAATGGGAAAGAAAACTACAGGCAGCAGAGGAGAAGTTG GCTGATGGCCAAAGATTGCTTAACCAAAGAGAGAAGCGAGCCAATGACACTGATAGAATT TTGAGGCAAAAGCAGAATGACCTTGAAGATGAGCAGAGGAAAATTGTCACCGCTAACTCA GTTTTGAGGAAGAAAGAAGATGATATGGGCAGCAAGATAGAAGATCTTACTCACAAGGAG AAGGAACTTGAAGATGCGAGAAAGAGTTTGGGGATAAAAGAGAGGGAGTTGCTAGATCTA CAGGAGAAACTAAATATTAAAGAGAGAGATGGTATTCAAAATCTAATGGATGAACATCGA AGTGTCCTGCGTTCCAAGGAAAAGGAATTTGAATTGGAACTGTGGCAGAGGCGGGCATCA TTGGATGAGGAGCTGAAAGGTAAGGTGCTTGAACTGGAGAAAAAGGAGGCTGAAGTTAAT CACATGGAAGAGAAGATTAAGAAACGAGAACAGGTCGTTGAAAAGAAAACGGAAAAAGTA AAAGAGAAGGAGAAGGATCATGAGTTGAAGTTAAAAGCACTGAAGGAAAAGGAGAAATCT TTGAAAAATGAGGAAAAAATTTTGGGAACTGAAAGGAAGCAACTAGATTCTGAGAAGGGG AATTTGCTAGCTCTGAAGGCTGAGCTTGAGAATGTAAGAGCTGAGCTTGAAAAGCAACAG ATCAAGATTAGTGAGGGTACAGAACAACTTAAAATAACTGAAGATGAGAGAATGGAACAT TCTCGCCTACAATCAGAACTGAAGCAGGAGATAGTTAAGTGTAGACTCCTCCGAGAAGAT CTATTGAAGGAAGCTGAAGATTTGAAGCAGGAAAAAGAAAGATTTGAGAGAGAATGGGAA GAACTAGATGAGAAAAGATCTGAGATCAAGATAGACTTGCAGGAACTTAATGAACGGAGA GAGAATTTAGAAAAACTGAAGCGCAGTGAAGAGGAAAGGATAAGCAAGGAGAAGCTGGAA ACAGACAATTATGTCCAGATGGAGTTGGAAGCCCTTAGAGTGGCAAGAGAAACATTTGAA GCTACCATGGATCATGAGAAGTCAATATTAGCCGAGGAAACTCGAAGTGAGAAAAGCCAG ATGCTTCATGCTTATGAACAGCAGAAAAGGGAACTTGAAAGTGATATGCAGAGGAAGCAG GAGGAAATGGAGTCTGCACTGCGTGTACAAGAGAAACTCTTTGAGGAAGAGAGCCAGAAG GAGCTCAGCAATATTGAATATATAAAGGAAATCACCCATAGAGAGATGGAAGAGATGAAA TTAGAAAGAGTCAGTCTTGAGAAAGAAAAACAGGAAATTTCTGCTAACAAGGGGATTCTT GAAGTACAACAGTTGGAAATGAAAAAGGATATTGATGTGCTTGTTGGCTTAAGCAGGAAG TTGAAGGATCAGAGGTTAGCTTACATTAAGGAAAGAGAGAGGTTTATTGATTTTGTCAAG CAGCAGAAGAGCTGCAGCTCTTGTGGAGAAGGAATTCATGTAATTGAGTTTTCTGACCTT CAAGCTCTAGCTGAAGCAGAGACTTTTGAGGCCCCTCCTCTGCCAAGTGTTGCACAGGAA TATTTGAAGGATGGTCTACAAGGATCTCCGGGAAGGGCTAGTGATGAGCTGTCCCCTGGA GCTCTTGATACAGCATCCATGGTTTCTGCTGGAACCATGTCCTGGTTTCGAAAGTGTACA TCCAAGATTCTCAAATTCTCACCAAGCAAAAACATTGGAAATGTTGCTTCTGATTGTCTG GTTGATGAATCTTCTCTGTCACAGAAGTGTGCAGGCATATCACCAAATAAACAATCAAAG GAAGGAAATCCAATGGATCTGTCCATTTCCATGAATGTTCTTGATGATCAGAGGGTTCAA CAGGATGATGGTGTTAGAGAGGTCAAAGTAGGCCAAGACAATGTAGAAGACTCTCATCAT TCGGACATGAAAGCTGGACAGCGCAGAACTGTCAAGAAAGGGCGTGGTAGAACTAGTAAA ACAGAAAAAGCTGCAAATATGACAGTTCTTGGGAAAATTTCTAAAGAGGGTGAGAATATC ACCAATGGAAGTTTGGAGACTTCAGTTAATATGAACGAGGAGAGCCAGAGAGGATCTGGT CTTTTGGGTGGAGCACCGAGAAATTCCAGAAAGCGTAGTCATACATCACAGGGAACAGCT TGTGAGATTGATGGCAATAATAGTGAAGGACAGTCGGATAGTGTAGCCAGCATTCGTGGG AAAAGGAGGCAACAGGCTGCCCCTAGTGTGCAGGCTCATGCCGAAAGAAGATACAATCTG CGCCGACCTAGAAGTGCTGCACCAGCGGCATCCTATGGATCTTTGCCAGAGCCAGTCGTA AAATCTCAGGAAGAGAATCAGAACTCTAAAGCTTCCCTGCAAACTCCTCAGGTGAACAAC AGTGAAGACGTCATTGATCATCCCACGGTATCTGAGAGCCCTTTCAATGATGCAGTGGAC AATCTGGAAAGCAGTGCTAACAAGGTAAATGAGCTGTTGGATGATACAGGTTTGAGTGAA GAGGTGAATGTAACACCAAAACGACCTTCAGCATCCAGCGATGAGGAAGGGTCTGATGAC AGTGATGATGAGGAGGAAGAAATTGAACATCCCGGTGAAGTGTCTGTAGGGAAGAAGATT TGGACTTTCATCACAACATAG

Peptide Sequence

PEP ID	Solyc02g089800.3.1
PEP Infomation	Nuclear matrix constituent-like protein 1 (AHRD V3.3 *** E5GCT1_CUCME)
Sequence	MDQEELIEKVSKLENELFDYQYNMGLILLEKKEWSSKFEEIKQTLEESNEAYRREQAAHL IAISEVEKREENLRKALGVEKQFARELEKELREMRLEYAEIKYTADSKLAEANALATSVE EKSLEVEAKLRAADAKLAEVNRRSSEVERKLNEVYAQENSLRRERSSFNAEREAYETNLS RQREDSQEWERKLQAAEEKLADGQRLLNQREKRANDTDRILRQKQNDLEDEQRKIVTANS VLRKKEDDMGSKIEDLTHKEKELEDARKSLGIKERELLDLQEKLNIKERDGIQNLMDEHR SVLRSKEKEFELELWQRRASLDEELKGKVLELEKKEAEVNHMEEKIKKREQVVEKKTEKV KEKEKDHELKLKALKEKEKSLKNEEKILGTERKQLDSEKGNLLALKAELENVRAELEKQQ IKISEGTEQLKITEDERMEHSRLQSELKQEIVKCRLLREDLLKEAEDLKQEKERFEREWE ELDEKRSEIKIDLQELNERRENLEKLKRSEEERISKEKLETDNYVQMELEALRVARETFE ATMDHEKSILAEETRSEKSQMLHAYEQQKRELESDMQRKQEEMESALRVQEKLFEEESQK ELSNIEYIKEITHREMEEMKLERVSLEKEKQEISANKGILEVQQLEMKKDIDVLVGLSRK LKDQRLAYIKERERFIDFVKQQKSCSSCGEGIHVIEFSDLQALAEAETFEAPPLPSVAQE YLKDGLQGSPGRASDELSPGALDTASMVSAGTMSWFRKCTSKILKFSPSKNIGNVASDCL VDESSLSQKCAGISPNKQSKEGNPMDLSISMNVLDDQRVQQDDGVREVKVGQDNVEDSHH SDMKAGQRRTVKKGRGRTSKTEKAANMTVLGKISKEGENITNGSLETSVNMNEESQRGSG LLGGAPRNSRKRSHTSQGTACEIDGNNSEGQSDSVASIRGKRRQQAAPSVQAHAERRYNL RRPRSAAPAASYGSLPEPVVKSQEENQNSKASLQTPQVNNSEDVIDHPTVSESPFNDAVD NLESSANKVNELLDDTGLSEEVNVTPKRPSASSDEEGSDDSDDEEEEIEHPGEVSVGKKI WTFITT*

Transcript Sequence

Transcript ID	Solyc02g089800.3.1
Transcript Infomation	Nuclear matrix constituent-like protein 1 (AHRD V3.3 *** E5GCT1_CUCME)
Sequence	AGATAAAAAACAAAAGTTGTGAGGTGATTGTGAAAAAGCGAGGGAGCCGGAGGAGCCTCT TGTAAATTAGGAAATTCTCCGGCGAGGGTTTCAAATTCCGGTATCAAATTAACGGTTTTG CTATTTCTTGATTTTCCTATCATTGTTCTTGTCGAAAGTTGTCAATCTGTGATTCCTGAA TTTCTTCTTGAGTTCTTGGAATCTTCCAGATATCTACGCGGCTGAGGAAATCTTGGACCG GGTGGTCGCTGTCACCAAGAACCCAACCGGTTGACAAGGGAAAAGGCATCGCCTTCACGG GTGATACTGCTCGGAAAAGTTTGACGAGCCAAGATTACGGAAATATGGATCAAGAAGAGC TAATTGAGAAGGTCTCCAAGCTCGAAAATGAGCTTTTTGACTACCAATACAATATGGGTC TTATCCTGCTTGAGAAGAAGGAGTGGTCTTCTAAGTTTGAAGAAATCAAGCAAACCTTAG AAGAATCAAATGAGGCCTATAGAAGAGAACAAGCAGCTCATTTAATTGCTATATCTGAAG TGGAGAAACGGGAAGAGAATTTAAGGAAGGCGCTTGGAGTCGAGAAGCAATTTGCACGAG AGCTAGAGAAAGAGTTGCGTGAGATGCGCTTGGAGTATGCGGAGATCAAATATACTGCTG ATTCAAAATTGGCAGAGGCAAATGCTCTGGCTACTAGTGTTGAAGAGAAATCATTAGAGG TAGAAGCAAAGTTGCGTGCAGCTGACGCCAAGCTTGCTGAGGTGAACAGAAGGAGCTCTG AAGTTGAGAGGAAGCTTAATGAAGTCTATGCCCAAGAAAATTCACTTCGAAGAGAACGGT CATCTTTCAATGCAGAGCGTGAAGCTTATGAGACTAATTTATCCAGACAAAGAGAGGACT CACAAGAATGGGAAAGAAAACTACAGGCAGCAGAGGAGAAGTTGGCTGATGGCCAAAGAT TGCTTAACCAAAGAGAGAAGCGAGCCAATGACACTGATAGAATTTTGAGGCAAAAGCAGA ATGACCTTGAAGATGAGCAGAGGAAAATTGTCACCGCTAACTCAGTTTTGAGGAAGAAAG AAGATGATATGGGCAGCAAGATAGAAGATCTTACTCACAAGGAGAAGGAACTTGAAGATG CGAGAAAGAGTTTGGGGATAAAAGAGAGGGAGTTGCTAGATCTACAGGAGAAACTAAATA TTAAAGAGAGAGATGGTATTCAAAATCTAATGGATGAACATCGAAGTGTCCTGCGTTCCA AGGAAAAGGAATTTGAATTGGAACTGTGGCAGAGGCGGGCATCATTGGATGAGGAGCTGA AAGGTAAGGTGCTTGAACTGGAGAAAAAGGAGGCTGAAGTTAATCACATGGAAGAGAAGA TTAAGAAACGAGAACAGGTCGTTGAAAAGAAAACGGAAAAAGTAAAAGAGAAGGAGAAGG ATCATGAGTTGAAGTTAAAAGCACTGAAGGAAAAGGAGAAATCTTTGAAAAATGAGGAAA AAATTTTGGGAACTGAAAGGAAGCAACTAGATTCTGAGAAGGGGAATTTGCTAGCTCTGA AGGCTGAGCTTGAGAATGTAAGAGCTGAGCTTGAAAAGCAACAGATCAAGATTAGTGAGG GTACAGAACAACTTAAAATAACTGAAGATGAGAGAATGGAACATTCTCGCCTACAATCAG AACTGAAGCAGGAGATAGTTAAGTGTAGACTCCTCCGAGAAGATCTATTGAAGGAAGCTG AAGATTTGAAGCAGGAAAAAGAAAGATTTGAGAGAGAATGGGAAGAACTAGATGAGAAAA GATCTGAGATCAAGATAGACTTGCAGGAACTTAATGAACGGAGAGAGAATTTAGAAAAAC TGAAGCGCAGTGAAGAGGAAAGGATAAGCAAGGAGAAGCTGGAAACAGACAATTATGTCC AGATGGAGTTGGAAGCCCTTAGAGTGGCAAGAGAAACATTTGAAGCTACCATGGATCATG AGAAGTCAATATTAGCCGAGGAAACTCGAAGTGAGAAAAGCCAGATGCTTCATGCTTATG AACAGCAGAAAAGGGAACTTGAAAGTGATATGCAGAGGAAGCAGGAGGAAATGGAGTCTG CACTGCGTGTACAAGAGAAACTCTTTGAGGAAGAGAGCCAGAAGGAGCTCAGCAATATTG AATATATAAAGGAAATCACCCATAGAGAGATGGAAGAGATGAAATTAGAAAGAGTCAGTC TTGAGAAAGAAAAACAGGAAATTTCTGCTAACAAGGGGATTCTTGAAGTACAACAGTTGG AAATGAAAAAGGATATTGATGTGCTTGTTGGCTTAAGCAGGAAGTTGAAGGATCAGAGGT TAGCTTACATTAAGGAAAGAGAGAGGTTTATTGATTTTGTCAAGCAGCAGAAGAGCTGCA GCTCTTGTGGAGAAGGAATTCATGTAATTGAGTTTTCTGACCTTCAAGCTCTAGCTGAAG CAGAGACTTTTGAGGCCCCTCCTCTGCCAAGTGTTGCACAGGAATATTTGAAGGATGGTC TACAAGGATCTCCGGGAAGGGCTAGTGATGAGCTGTCCCCTGGAGCTCTTGATACAGCAT CCATGGTTTCTGCTGGAACCATGTCCTGGTTTCGAAAGTGTACATCCAAGATTCTCAAAT TCTCACCAAGCAAAAACATTGGAAATGTTGCTTCTGATTGTCTGGTTGATGAATCTTCTC TGTCACAGAAGTGTGCAGGCATATCACCAAATAAACAATCAAAGGAAGGAAATCCAATGG ATCTGTCCATTTCCATGAATGTTCTTGATGATCAGAGGGTTCAACAGGATGATGGTGTTA GAGAGGTCAAAGTAGGCCAAGACAATGTAGAAGACTCTCATCATTCGGACATGAAAGCTG GACAGCGCAGAACTGTCAAGAAAGGGCGTGGTAGAACTAGTAAAACAGAAAAAGCTGCAA ATATGACAGTTCTTGGGAAAATTTCTAAAGAGGGTGAGAATATCACCAATGGAAGTTTGG AGACTTCAGTTAATATGAACGAGGAGAGCCAGAGAGGATCTGGTCTTTTGGGTGGAGCAC CGAGAAATTCCAGAAAGCGTAGTCATACATCACAGGGAACAGCTTGTGAGATTGATGGCA ATAATAGTGAAGGACAGTCGGATAGTGTAGCCAGCATTCGTGGGAAAAGGAGGCAACAGG CTGCCCCTAGTGTGCAGGCTCATGCCGAAAGAAGATACAATCTGCGCCGACCTAGAAGTG CTGCACCAGCGGCATCCTATGGATCTTTGCCAGAGCCAGTCGTAAAATCTCAGGAAGAGA ATCAGAACTCTAAAGCTTCCCTGCAAACTCCTCAGGTGAACAACAGTGAAGACGTCATTG ATCATCCCACGGTATCTGAGAGCCCTTTCAATGATGCAGTGGACAATCTGGAAAGCAGTG CTAACAAGGTAAATGAGCTGTTGGATGATACAGGTTTGAGTGAAGAGGTGAATGTAACAC CAAAACGACCTTCAGCATCCAGCGATGAGGAAGGGTCTGATGACAGTGATGATGAGGAGG AAGAAATTGAACATCCCGGTGAAGTGTCTGTAGGGAAGAAGATTTGGACTTTCATCACAA CATAGTGGAGACCTAAATGACTGTAGTTTGTGGTCGTGCATTGGAGGTAGCTCTAGGCAT CTTGATTGGTATTTTGTTTCTTTTGCTACTTGTAGAGTAATTTGATGATTTTAGAGTAAT GTGCAGTAGTGTGTATGCTTAAAGTTTAGTCAACAGAAATCAGTTTAGGGTCGGCAATTT GATTGTTCATATAATGTTGGTCCAACTCCGGGTGCACGCATATTGGTTTAACAATTTTTA GTATCCATATGCTTGCTGTCCCTAAGTTGACTATTGCAGCTGTAACACTAGAGTGTGCTT CTCTCCTGTATCTACACTATTGTAAGTTTAACCACTAAATAGGTGGATAATATTCTGCAA TCCATTTGATTTTGATCTTTCCTAGTAGGTGAAATTGTGGACGACCGTGTAATTGGACTT GCGTACATATCTGAGATGTTATTTTCTATGCGTTTCATGGATTTGTGGCAATCTTCACAA AAACGTTGCCACCAGCTGATGAGCCTGTCACTGTGCATCGGATCAGCGTTGTCAATTACA GAACTGGCTGTACACTTGCCATGAATTTACACTTGAACAATCATGGCAATGGTAATTTCC TGTAGTCGCTAACCC