Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g089130.3.1
CDS Infomation

COBRA-like protein (AHRD V3.3 *** L0ATP1_POPTO)
Sequence

ATGAGAGGTTTGATTGTTGTGGCTGGCTTCTTAATAATTGCTCTCATTCCTCATACAGTT
GCATTTGATCCGTTGGATCCCAATGGGAATATCACCATCAAATGGGATGTTATGTCTTGG
ACACCAGATGGCTATGTCGCTACTGTAACGATGAACAATTTCCAAATGTACCGGCATATC
ATGACCCCTGGTTGGACCCTAGGATGGACATGGGCTAAGAAAGAAGTGATTTGGTCTATG
GTGGGTGCACAAACCACTGAACAAGGGGACTGCTCTAAATTCAAAGGCAACATTCCTCAT
TGCTGCAAAAAGAATCCCACAGTAGTAGATTTGCTCCCTGGAACTCCTTATAACCAGCAA
TTTACCAATTGCTGCAAAGGTGGTGTCTTGGCTTCTTGGGGACAAGATCCTCAATCTTCT
GTCTCTGCATTTCAAGTTAGCGTCGGACAAGCTGGTACCACCAACAAGACCGTTAAACTT
CCTAAGAACTTCACTTTGCTTGGTCCTGGACCTGGATACACTTGTGGCCCTGCTAAGATT
GTTCCACCTACCAAATTTTTCACACCTGATCTTCGGCGCAAAACACAGGCCTTAACACGA
AAACACCCGAGTTGTTGTGTCTCCATGTCAAGTTTCTACAATGAAACCATCACTTCTTGT
CCTTCTTGTGCTTGTGGTTGTGAGAACAGAAACAAATGTATCAAGAGCGACTCCAAACTA
TTGAGTGTGGTTGGGGTAAACACTCCAAGAAAAGACAATGCACCGTTAATACAGTGTACG
CACCATATGTGCCCAATTCGAGTGCATTGGCATGTGAAACTCAACTACAAGGACTATTGG
CGAGTCAAGCTTACTGTAACCAACTTCAATTACAGGATCAATTACACACAATGGACTCTT
GTTGTTCAGCATCCAAATCTTAACAATGTTACACAAGTTTTTAGCTTTGATTACAAGCCT
CTCGTTCCCTATCAATCCGTCAATGACACTGGAATGTTCTATGGTATGAAGTTCTACAAT
GACTTACTGATGGAGGCAGGGCCATCTGGGACTGTCCAATCAGAAGTGCTCCTCCAGAAG
GACAAGGAAACATTCTCCTTCAAGCAAGGATGGGCATTTCCTCGGAAAGTCTACTTCAAT
GGCGACGAATGCATGCTGCCACCACCAGACACTTATCCATACTTACCCAACTTTGCCCAT
CATAGTCCTACTGCCTTCACAACATCGGACTATGGTAGCAGCCCTTTTAGCATGAAACTA
GTATATGCACACCACAAGTCAGAACGCATGGCCATTGCTCAGCCATACCAACTCACACAC
CAATCTTGGCAATAA

Peptide Sequence

PEP ID

Solyc02g089130.3.1
PEP Infomation

COBRA-like protein (AHRD V3.3 *** L0ATP1_POPTO)
Sequence

MRGLIVVAGFLIIALIPHTVAFDPLDPNGNITIKWDVMSWTPDGYVATVTMNNFQMYRHI
MTPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGNIPHCCKKNPTVVDLLPGTPYNQQ
FTNCCKGGVLASWGQDPQSSVSAFQVSVGQAGTTNKTVKLPKNFTLLGPGPGYTCGPAKI
VPPTKFFTPDLRRKTQALTRKHPSCCVSMSSFYNETITSCPSCACGCENRNKCIKSDSKL
LSVVGVNTPRKDNAPLIQCTHHMCPIRVHWHVKLNYKDYWRVKLTVTNFNYRINYTQWTL
VVQHPNLNNVTQVFSFDYKPLVPYQSVNDTGMFYGMKFYNDLLMEAGPSGTVQSEVLLQK
DKETFSFKQGWAFPRKVYFNGDECMLPPPDTYPYLPNFAHHSPTAFTTSDYGSSPFSMKL
VYAHHKSERMAIAQPYQLTHQSWQ*

Transcript Sequence

Transcript ID

Solyc02g089130.3.1
Transcript Infomation

COBRA-like protein (AHRD V3.3 *** L0ATP1_POPTO)
Sequence

ATGAGAGGTTTGATTGTTGTGGCTGGCTTCTTAATAATTGCTCTCATTCCTCATACAGTT
GCATTTGATCCGTTGGATCCCAATGGGAATATCACCATCAAATGGGATGTTATGTCTTGG
ACACCAGATGGCTATGTCGCTACTGTAACGATGAACAATTTCCAAATGTACCGGCATATC
ATGACCCCTGGTTGGACCCTAGGATGGACATGGGCTAAGAAAGAAGTGATTTGGTCTATG
GTGGGTGCACAAACCACTGAACAAGGGGACTGCTCTAAATTCAAAGGCAACATTCCTCAT
TGCTGCAAAAAGAATCCCACAGTAGTAGATTTGCTCCCTGGAACTCCTTATAACCAGCAA
TTTACCAATTGCTGCAAAGGTGGTGTCTTGGCTTCTTGGGGACAAGATCCTCAATCTTCT
GTCTCTGCATTTCAAGTTAGCGTCGGACAAGCTGGTACCACCAACAAGACCGTTAAACTT
CCTAAGAACTTCACTTTGCTTGGTCCTGGACCTGGATACACTTGTGGCCCTGCTAAGATT
GTTCCACCTACCAAATTTTTCACACCTGATCTTCGGCGCAAAACACAGGCCTTAACACGA
AAACACCCGAGTTGTTGTGTCTCCATGTCAAGTTTCTACAATGAAACCATCACTTCTTGT
CCTTCTTGTGCTTGTGGTTGTGAGAACAGAAACAAATGTATCAAGAGCGACTCCAAACTA
TTGAGTGTGGTTGGGGTAAACACTCCAAGAAAAGACAATGCACCGTTAATACAGTGTACG
CACCATATGTGCCCAATTCGAGTGCATTGGCATGTGAAACTCAACTACAAGGACTATTGG
CGAGTCAAGCTTACTGTAACCAACTTCAATTACAGGATCAATTACACACAATGGACTCTT
GTTGTTCAGCATCCAAATCTTAACAATGTTACACAAGTTTTTAGCTTTGATTACAAGCCT
CTCGTTCCCTATCAATCCGTCAATGACACTGGAATGTTCTATGGTATGAAGTTCTACAAT
GACTTACTGATGGAGGCAGGGCCATCTGGGACTGTCCAATCAGAAGTGCTCCTCCAGAAG
GACAAGGAAACATTCTCCTTCAAGCAAGGATGGGCATTTCCTCGGAAAGTCTACTTCAAT
GGCGACGAATGCATGCTGCCACCACCAGACACTTATCCATACTTACCCAACTTTGCCCAT
CATAGTCCTACTGCCTTCACAACATCGGACTATGGTAGCAGCCCTTTTAGCATGAAACTA
GTATATGCACACCACAAGTCAGAACGCATGGCCATTGCTCAGCCATACCAACTCACACAC
CAATCTTGGCAATAA