Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g087010.2.1
CDS Infomation

LOW QUALITY:NHL repeat-containing family protein (AHRD V3.3 *** B9HJT0_POPTR)
Sequence

ATGAAAAGGAATTGGGTTGTCTTATTTCTTGTTATCTTTTTTTTATTGATTGAAGTCTCA
TCAGCCTCAGCAACCCCGGCTGCAAAGATTGTTGGTGGGGTTGTTGCTAATGTTGCGTCT
GTGATGTTTAAGTGGGCGTGGTCACTAAAATCGACGACAAAAACAGCTGTTTCTACCCGT
TCAATGATAAAGTTTGAGAGTGGATACGTTGTTGAAACTGTGTTTGATGGAAGCAAGATG
GGAATTGAACCTTATTCAGTGGAGGTTTCTTCAACTGGAGAAGTTCTCATTTTGGATTGT
GAGAATAGTAATGTTTACAGAGTGTCAACACCGTTGTCTCGATATAGCCGTCCAAAATTG
GTTGCTGGATCTCCTGAAGGGTATTCAGGGCATGTGGATGGGAGGCTACGAGAAGCAAGG
ATGGACCATCCTAAAGGAATTGCAATGGATGATCAAGGAAATATATATGTTGCGGATACC
ATGAATATGGCAATCAGAAAAATCAGCGATGCTGGAGTTGTAACTATTGCTGGAGGAAAG
TCAGCCCGAGGTGGAGGTCATCTTGATGGGCCAAGTGAAGATGCACAATTTTCCGATGAC
TTTGATGTGGTTTTTGTTGGTAGCAGCTGCTCGCTATTAGTTATAGACAGAGGAAACCAA
GCAATTAGAGAGATACAGCTCAATGATGATGACTGTTCACACCAGTATGACGATAACAAT
CTACAACTTGGTGTTGCACTGCTTTGTGCGGCTGTATTTTTTGGTTACATGCTGGCCTTG
TTACAACGTAGAATTGGAGCCCTTTTTTCATCGAACAGTGACGATCAGCGGGCTCCTGTC
AGAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATT
CCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTT
GTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGA
AAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGT
ACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGAT
ACCAGAGACCCTACACCCCGAAAAACCTATCCAATCATGAACAAAGACCCGGAGAAACCA
CGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCAT
GGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAG
CATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACG
AAAGAGATTGTGTTTGGAGCAGTTCAAGAACAGGATGGACGACATGAAACAATGGTGATA
AAAGCAGTTGATTATGGGGATCCTGCTTATAACAATCACAACGTTCGATCCAGGTACAAC
TACAGCACGCGTTACTCATTCTGA

Peptide Sequence

PEP ID

Solyc02g087010.2.1
PEP Infomation

LOW QUALITY:NHL repeat-containing family protein (AHRD V3.3 *** B9HJT0_POPTR)
Sequence

MKRNWVVLFLVIFFLLIEVSSASATPAAKIVGGVVANVASVMFKWAWSLKSTTKTAVSTR
SMIKFESGYVVETVFDGSKMGIEPYSVEVSSTGEVLILDCENSNVYRVSTPLSRYSRPKL
VAGSPEGYSGHVDGRLREARMDHPKGIAMDDQGNIYVADTMNMAIRKISDAGVVTIAGGK
SARGGGHLDGPSEDAQFSDDFDVVFVGSSCSLLVIDRGNQAIREIQLNDDDCSHQYDDNN
LQLGVALLCAAVFFGYMLALLQRRIGALFSSNSDDQRAPVRGMQHPPYQRNMKSVRPPII
PPEDEYEKQDENLFLSLGRLVMNTGSTVVEIFGGMFSGFRKNSYPHHVQQHYHYNHKQSS
TWPMQESYVIRDEDEAPPLDTRDPTPRKTYPIMNKDPEKPRHIRQSQSHYVGWNGNAHGH
GNFQQQQHQHQQQFLPQVYQHHDKHQSSSPQTYYEESCETKEIVFGAVQEQDGRHETMVI
KAVDYGDPAYNNHNVRSRYNYSTRYSF*

Transcript Sequence

Transcript ID

Solyc02g087010.2.1
Transcript Infomation

LOW QUALITY:NHL repeat-containing family protein (AHRD V3.3 *** B9HJT0_POPTR)
Sequence

ATGAAAAGGAATTGGGTTGTCTTATTTCTTGTTATCTTTTTTTTATTGATTGAAGTCTCA
TCAGCCTCAGCAACCCCGGCTGCAAAGATTGTTGGTGGGGTTGTTGCTAATGTTGCGTCT
GTGATGTTTAAGTGGGCGTGGTCACTAAAATCGACGACAAAAACAGCTGTTTCTACCCGT
TCAATGATAAAGTTTGAGAGTGGATACGTTGTTGAAACTGTGTTTGATGGAAGCAAGATG
GGAATTGAACCTTATTCAGTGGAGGTTTCTTCAACTGGAGAAGTTCTCATTTTGGATTGT
GAGAATAGTAATGTTTACAGAGTGTCAACACCGTTGTCTCGATATAGCCGTCCAAAATTG
GTTGCTGGATCTCCTGAAGGGTATTCAGGGCATGTGGATGGGAGGCTACGAGAAGCAAGG
ATGGACCATCCTAAAGGAATTGCAATGGATGATCAAGGAAATATATATGTTGCGGATACC
ATGAATATGGCAATCAGAAAAATCAGCGATGCTGGAGTTGTAACTATTGCTGGAGGAAAG
TCAGCCCGAGGTGGAGGTCATCTTGATGGGCCAAGTGAAGATGCACAATTTTCCGATGAC
TTTGATGTGGTTTTTGTTGGTAGCAGCTGCTCGCTATTAGTTATAGACAGAGGAAACCAA
GCAATTAGAGAGATACAGCTCAATGATGATGACTGTTCACACCAGTATGACGATAACAAT
CTACAACTTGGTGTTGCACTGCTTTGTGCGGCTGTATTTTTTGGTTACATGCTGGCCTTG
TTACAACGTAGAATTGGAGCCCTTTTTTCATCGAACAGTGACGATCAGCGGGCTCCTGTC
AGAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATT
CCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTT
GTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGA
AAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGT
ACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGAT
ACCAGAGACCCTACACCCCGAAAAACCTATCCAATCATGAACAAAGACCCGGAGAAACCA
CGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCAT
GGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAG
CATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACG
AAAGAGATTGTGTTTGGAGCAGTTCAAGAACAGGATGGACGACATGAAACAATGGTGATA
AAAGCAGTTGATTATGGGGATCCTGCTTATAACAATCACAACGTTCGATCCAGGTACAAC
TACAGCACGCGTTACTCATTCTGATGGTAATAGCTAGACGACCATTGCGAAAAACATCAA
CTTGTACTCTGTCTGGATTTCACTTGTTGTATCTTTCATAGGGAAATGGATATGATCATA
GAAAACAGCACCAACAAAGTATATGAATTCTGAATTTCTTTTGTAATCCATAACTTATAG
TGAATCTTTTTGA