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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g081860.2.1
CDS Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT4G20090.2)
Sequence

ATGCTCTTTTACTCCTTCCGTACCAAACAGTTCACTTCAAAGCTAATCCCATGTAAGTCT
TTCTCTAACTTCACCATTAACCGTGTATTCTCAGCTCTATCTAACCCTTCTCATACTGAC
CAAGAACCTGAAATAGACTATTCAATTTCTACTTTGAAAACTGAAATGGGACTACCCAAA
TTGAGTTCTTGTGGAACTGAAATGGAAATACCCATATCTGATAACTCAATGAAGATTGCC
CCAATACCTAAGTTTAATTCTTGTGTAACTGAAGTAGAAGAACCCCTTTCTGATAAATCA
TTTAAAGTTACCCTAAAACCCAACTTGGGTTCTTGTGAAACTGAAGTGGAAGTACCAATT
TCAGACAAGCTATTTAAAGAGGCTCCAAAGTTGGGTTCTTTCAAATTGGGTGATTCTACA
TTCTATTCTCTTATTGAGAAGTATGCTAATTCCGAGGACTTTACGTCTTTGGAGAAGGTT
TTTGGTAGAATGAAGTGTGAAAAAAGAGTCTTTATTGAGAAGAGTTTTATCTTAGTGTTT
AGAGCTTATGGAAAAGCCCGTTTGCCTGAAAAAGCTGTTGAGTTGTTTGAAAGAATGGTG
GATGAGTTTCAATGTAAACGAACTGTGAAGTCATTTAATTCTGTTCTTAATGTGATAGTT
CAGACAGGATTATATCACCGTGCTTTAGATTTTTATGCTGATGTTGTAAATAATAGGAAT
ATTATGCCAAATGTGCTTTCTTTTAATTTAGTTATTAAAACCATGTGTAAGCTTCGGATG
GTCGATAGAGCTATGGAGGTGTTTAGAGAAATGCCTACTTGGAAATGTGAGCCGGATGTT
TATACATACTGCACTTTGATGGATGGGTTATGCAAGGATGACCGGATTGATGAAGCAGTT
ATTCTTTTGGATGAAATGCAGGTAGAGGGATGTCTTCCTGTTCCAGTAACATTTAATGTG
TTGATTAATGGGCTTTGTCGGAAAGGTGACTTGGCTCGAGCTGCAAAGCTTGTGGATAAC
ATGTTTCTTAAAGGGTGTGTTCCAAATGATGTGACTTATAACACACTTATACACGGTTTG
TGCCTGAAAGGTAAATTGGAGAAAGCAGTTAGTTTATTGGATAGAATGGTGTCAAATAAG
TATATACCAACTGATATAACCTATGGAACGATTATCAATGGGTTTGTTAAGCAAAGAAGA
GCCACAGATGGTGTGCAGATCTTGTTGGCAATGCAAGAGAAAGGGCATCTGGCAAATGAA
TATGTCTACTCAGCACTAGTTAGTGGGTTGTTCAAGGAAGGAAAACCTGAAGAGGCCTTA
AAAATATGGAAGGAAATGATAGAAAAGGGAGTAAAACCTAATATAGTTGCTTATTCTGCT
TTTATAGATGGCTTGTGTCGAGAAGGCAAACCTGATGAAGCTAAGGAGATTCTTTCAGAG
ATGAATAAAATGGGTTGCACTCCCAATGCTTATACTTACTGCTCCTTGATGAAAGGTTAT
TTTAAAACCAGTGACAGCAACAAGGCTATACTTTTGTGGAAAGACATGGCAACCAGTGGT
ATCACATGCAATGAAATCTGCTACAGTGTACTTATCCATGGACTGTGTCAAGATGGGAAG
CTCAAAGAGGCTATGATGGTGTGGAAGCATATGTTAGTCACGGCCTTTGCAATGCTGGTT
CTGTGGACCAGGGATTGA

Peptide Sequence

PEP ID

Solyc02g081860.2.1
PEP Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT4G20090.2)
Sequence

MLFYSFRTKQFTSKLIPCKSFSNFTINRVFSALSNPSHTDQEPEIDYSISTLKTEMGLPK
LSSCGTEMEIPISDNSMKIAPIPKFNSCVTEVEEPLSDKSFKVTLKPNLGSCETEVEVPI
SDKLFKEAPKLGSFKLGDSTFYSLIEKYANSEDFTSLEKVFGRMKCEKRVFIEKSFILVF
RAYGKARLPEKAVELFERMVDEFQCKRTVKSFNSVLNVIVQTGLYHRALDFYADVVNNRN
IMPNVLSFNLVIKTMCKLRMVDRAMEVFREMPTWKCEPDVYTYCTLMDGLCKDDRIDEAV
ILLDEMQVEGCLPVPVTFNVLINGLCRKGDLARAAKLVDNMFLKGCVPNDVTYNTLIHGL
CLKGKLEKAVSLLDRMVSNKYIPTDITYGTIINGFVKQRRATDGVQILLAMQEKGHLANE
YVYSALVSGLFKEGKPEEALKIWKEMIEKGVKPNIVAYSAFIDGLCREGKPDEAKEILSE
MNKMGCTPNAYTYCSLMKGYFKTSDSNKAILLWKDMATSGITCNEICYSVLIHGLCQDGK
LKEAMMVWKHMLVTAFAMLVLWTRD*

Transcript Sequence

Transcript ID

Solyc02g081860.2.1
Transcript Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT4G20090.2)
Sequence

TGAGAATCTGAGTTGAAAAGGCATGCTCTTTTACTCCTTCCGTACCAAACAGTTCACTTC
AAAGCTAATCCCATGTAAGTCTTTCTCTAACTTCACCATTAACCGTGTATTCTCAGCTCT
ATCTAACCCTTCTCATACTGACCAAGAACCTGAAATAGACTATTCAATTTCTACTTTGAA
AACTGAAATGGGACTACCCAAATTGAGTTCTTGTGGAACTGAAATGGAAATACCCATATC
TGATAACTCAATGAAGATTGCCCCAATACCTAAGTTTAATTCTTGTGTAACTGAAGTAGA
AGAACCCCTTTCTGATAAATCATTTAAAGTTACCCTAAAACCCAACTTGGGTTCTTGTGA
AACTGAAGTGGAAGTACCAATTTCAGACAAGCTATTTAAAGAGGCTCCAAAGTTGGGTTC
TTTCAAATTGGGTGATTCTACATTCTATTCTCTTATTGAGAAGTATGCTAATTCCGAGGA
CTTTACGTCTTTGGAGAAGGTTTTTGGTAGAATGAAGTGTGAAAAAAGAGTCTTTATTGA
GAAGAGTTTTATCTTAGTGTTTAGAGCTTATGGAAAAGCCCGTTTGCCTGAAAAAGCTGT
TGAGTTGTTTGAAAGAATGGTGGATGAGTTTCAATGTAAACGAACTGTGAAGTCATTTAA
TTCTGTTCTTAATGTGATAGTTCAGACAGGATTATATCACCGTGCTTTAGATTTTTATGC
TGATGTTGTAAATAATAGGAATATTATGCCAAATGTGCTTTCTTTTAATTTAGTTATTAA
AACCATGTGTAAGCTTCGGATGGTCGATAGAGCTATGGAGGTGTTTAGAGAAATGCCTAC
TTGGAAATGTGAGCCGGATGTTTATACATACTGCACTTTGATGGATGGGTTATGCAAGGA
TGACCGGATTGATGAAGCAGTTATTCTTTTGGATGAAATGCAGGTAGAGGGATGTCTTCC
TGTTCCAGTAACATTTAATGTGTTGATTAATGGGCTTTGTCGGAAAGGTGACTTGGCTCG
AGCTGCAAAGCTTGTGGATAACATGTTTCTTAAAGGGTGTGTTCCAAATGATGTGACTTA
TAACACACTTATACACGGTTTGTGCCTGAAAGGTAAATTGGAGAAAGCAGTTAGTTTATT
GGATAGAATGGTGTCAAATAAGTATATACCAACTGATATAACCTATGGAACGATTATCAA
TGGGTTTGTTAAGCAAAGAAGAGCCACAGATGGTGTGCAGATCTTGTTGGCAATGCAAGA
GAAAGGGCATCTGGCAAATGAATATGTCTACTCAGCACTAGTTAGTGGGTTGTTCAAGGA
AGGAAAACCTGAAGAGGCCTTAAAAATATGGAAGGAAATGATAGAAAAGGGAGTAAAACC
TAATATAGTTGCTTATTCTGCTTTTATAGATGGCTTGTGTCGAGAAGGCAAACCTGATGA
AGCTAAGGAGATTCTTTCAGAGATGAATAAAATGGGTTGCACTCCCAATGCTTATACTTA
CTGCTCCTTGATGAAAGGTTATTTTAAAACCAGTGACAGCAACAAGGCTATACTTTTGTG
GAAAGACATGGCAACCAGTGGTATCACATGCAATGAAATCTGCTACAGTGTACTTATCCA
TGGACTGTGTCAAGATGGGAAGCTCAAAGAGGCTATGATGGTGTGGAAGCATATGTTAGT
CACGGCCTTTGCAATGCTGGTTCTGTGGACCAGGGATTGA