Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g079920.3.1
CDS Infomation

C2H2-like zinc finger protein (AHRD V3.3 *** G7JF39_MEDTR)
Sequence

ATGCCAGCAGTTTGGTTTGCTTTAAAGAAATCATTGCAGTGTAGATCAGAGATAAAAGAT
GTGTATGATCCAAGAAGTGAAGGGAAAAATTTAAGCAAGATATCGACGAAAAAGGCGACG
ACAGGTAGGTCAGGTTGTTCAAGATCAATTGCAAATCTGAAAGATGTTATACATGGAAGT
AAAAGGCATATGGAGAAGCCACCATTACAGAGTCCAAGATCTATTGGAAGCAGTGAGCTT
TTGAATCCAATTACACATGAAGTTGTTTTGAGTAATTCAACTTGTGAACTCAAGATTACT
AGTTGTAATTTCCAAGATGGTAATGGTAATGGGAGTAGTGGGAATAATGTTGAGAGTATT
TCTGCTTTTATGGGTACTTTAAAACCAGGGACCCCTGGCCCTGGAGGACACCATATTGGT
TCATCAAGGAAATACAGAGGCTTTGGTAGTCCTATAAGAAAAGGCTCACCTGGAAATTTA
TCAAGAAAAACAGGGCCTGGATTTGGGGGTAATGTTTCTAGGCCTAAAGCTTCTTATGGT
GCAGATTCTCATGGCTTGACTTGTCATAAATGTGGTGAACAATTTGTGAAATGGGAAGCT
GTTGAAACACATCATCTCTCAAAACATGCTGTGACAGAACTTGTTGAAGGGGATTCTTCG
AGGAAAATCGTAGAGATAATATGCAGAACAAGCTGTTCAAAGCCTGAAAACAGTTCAAAT
GGTATTGAGAGAATCTTGAAAGTTCACAATATGCAGAAAGTACTAGCTCAATTCGAGGAA
TATCGCGAATTAGTAAAGATCAAAGCCAGTAAACTCGCCAAGAAACACCCTCGTTGCTTA
GCGGATGGGAATGAGCTTTTAAGATTCTTTGGCACAACTGTTGAATGTTCTCTTGGCATG
AACAGCTCTTCTAGCCTATGTACATCAGAAAAATGCAAAGTTTGCAGGATTTTACAACGT
GGATTCTCAATCAAGAAGGAAATAAATGGTGGGGTTGGTGTTTTTACAGCTTCCACAAGT
GGAAGAGCACTAGAAGCCATTGAGGAAAATGATGAAAATATACTATCTTGTAGAAAGGCT
CTAATAGTATGCAGAGTAATTGCTGGTAGAGTGCATAGACCATTGGAAAATGTTCAAGAA
TTGATGGGTCAATCAGGATTTGATTCATTGGCTGGCAAAGTTGGACTTTACTCAAACATT
GAAGAACTCTATTTGCTCAGTCCTAAAGCTTTGCTTCCTTGCTTTGTGGTGATTTGCAAA
TCATAA

Peptide Sequence

PEP ID

Solyc02g079920.3.1
PEP Infomation

C2H2-like zinc finger protein (AHRD V3.3 *** G7JF39_MEDTR)
Sequence

MPAVWFALKKSLQCRSEIKDVYDPRSEGKNLSKISTKKATTGRSGCSRSIANLKDVIHGS
KRHMEKPPLQSPRSIGSSELLNPITHEVVLSNSTCELKITSCNFQDGNGNGSSGNNVESI
SAFMGTLKPGTPGPGGHHIGSSRKYRGFGSPIRKGSPGNLSRKTGPGFGGNVSRPKASYG
ADSHGLTCHKCGEQFVKWEAVETHHLSKHAVTELVEGDSSRKIVEIICRTSCSKPENSSN
GIERILKVHNMQKVLAQFEEYRELVKIKASKLAKKHPRCLADGNELLRFFGTTVECSLGM
NSSSSLCTSEKCKVCRILQRGFSIKKEINGGVGVFTASTSGRALEAIEENDENILSCRKA
LIVCRVIAGRVHRPLENVQELMGQSGFDSLAGKVGLYSNIEELYLLSPKALLPCFVVICK
S*

Transcript Sequence

Transcript ID

Solyc02g079920.3.1
Transcript Infomation

C2H2-like zinc finger protein (AHRD V3.3 *** G7JF39_MEDTR)
Sequence

AGATTTTTTTCCTTTCTCAATGCAAACACTTCTAAACTTTTGATTCAATGTATATTTTCA
AGATTTGTCTAATTTGAAGGTAAAAAGGAGGAGGAGATTTAAAAAAAAAATGCCAGCAGT
TTGGTTTGCTTTAAAGAAATCATTGCAGTGTAGATCAGAGATAAAAGATGTGTATGATCC
AAGAAGTGAAGGGAAAAATTTAAGCAAGATATCGACGAAAAAGGCGACGACAGGTAGGTC
AGGTTGTTCAAGATCAATTGCAAATCTGAAAGATGTTATACATGGAAGTAAAAGGCATAT
GGAGAAGCCACCATTACAGAGTCCAAGATCTATTGGAAGCAGTGAGCTTTTGAATCCAAT
TACACATGAAGTTGTTTTGAGTAATTCAACTTGTGAACTCAAGATTACTAGTTGTAATTT
CCAAGATGGTAATGGTAATGGGAGTAGTGGGAATAATGTTGAGAGTATTTCTGCTTTTAT
GGGTACTTTAAAACCAGGGACCCCTGGCCCTGGAGGACACCATATTGGTTCATCAAGGAA
ATACAGAGGCTTTGGTAGTCCTATAAGAAAAGGCTCACCTGGAAATTTATCAAGAAAAAC
AGGGCCTGGATTTGGGGGTAATGTTTCTAGGCCTAAAGCTTCTTATGGTGCAGATTCTCA
TGGCTTGACTTGTCATAAATGTGGTGAACAATTTGTGAAATGGGAAGCTGTTGAAACACA
TCATCTCTCAAAACATGCTGTGACAGAACTTGTTGAAGGGGATTCTTCGAGGAAAATCGT
AGAGATAATATGCAGAACAAGCTGTTCAAAGCCTGAAAACAGTTCAAATGGTATTGAGAG
AATCTTGAAAGTTCACAATATGCAGAAAGTACTAGCTCAATTCGAGGAATATCGCGAATT
AGTAAAGATCAAAGCCAGTAAACTCGCCAAGAAACACCCTCGTTGCTTAGCGGATGGGAA
TGAGCTTTTAAGATTCTTTGGCACAACTGTTGAATGTTCTCTTGGCATGAACAGCTCTTC
TAGCCTATGTACATCAGAAAAATGCAAAGTTTGCAGGATTTTACAACGTGGATTCTCAAT
CAAGAAGGAAATAAATGGTGGGGTTGGTGTTTTTACAGCTTCCACAAGTGGAAGAGCACT
AGAAGCCATTGAGGAAAATGATGAAAATATACTATCTTGTAGAAAGGCTCTAATAGTATG
CAGAGTAATTGCTGGTAGAGTGCATAGACCATTGGAAAATGTTCAAGAATTGATGGGTCA
ATCAGGATTTGATTCATTGGCTGGCAAAGTTGGACTTTACTCAAACATTGAAGAACTCTA
TTTGCTCAGTCCTAAAGCTTTGCTTCCTTGCTTTGTGGTGATTTGCAAATCATAAATACA
CATTGTGCATGAGCCATTCTCTCATGTAGATCAATTGAAGTTCTTTATGTTTAGTTGAAG
TGTCCTGCTTCTAACAAGTGTAAATTTTATTCTTTTGCATTTTGAGATACATGGGTTTTG
AATCATAGAACTTTCTGGGTGA