Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g079030.3.1
CDS Infomation

Sphingosine kinase, putative (AHRD V3.3 *** B9SFA5_RICCO)
Sequence

ATGGACCCGACGGACGCCGGAGCTCCTCTTCTATCCGACCGGGTTCAAATCAGCGGCAAT
GTAGTTCCGATGACTCTGACAACTGGAGGAAAACTCCGATGGCTTGACCGGTGTTTGTCA
ATTGCGAAAGATGTCCTCGGTTTTACCGTCGAAGGTTGTCGGATCAAAATCAATGCCGTC
ATTGAGAGTGGACCTGGAATTTGCTGCCCCGGTAATGTAGGAGCTTCGATGAGGAAGAAT
TTCACTTTTGAGCCATTGTCTGAGGATTCTCTTCGGCTTTGGAATCAACGACTCCAATCA
GTCATCGATTCGCTCGGTCGTCCTAAGAGACTTCTTGTACTTCTGAATCCATATGGAGGA
AGCCGATCTGCACCCAAAGTATTTAGTGACGATGTAAAGCCCCTGCTAGAGGATGCAAAT
ATTCACTATACACTGCAAGAAACTAAATATCGGTTACATGCAAAGGAAGTTGCTCATTCG
TTGGATCTTTTGCGATATGATGGAGTTCTTTGTGTCAGTGGTGATGGAATTTTGGTTGAG
GTAGTGAATGGACTGCTTGAAAGGGAGGATTGGAGTACTGCAATAAAGATGCCTCTTGGA
GTAATACCCGCAGGAACTTCAAATGGGATGGCCAAGTCTCTTCTAGATTCTGTTGGTGAA
TCTTGTACTGCATTTAATGCAACTCTTGCTATAATCAGAGGCCACAAGAGATCACTAGAT
GTAGCTACAGTTTTACAGGGGCAGAAAAAATATTTCAGTGTGCTGATGCTTGCCTGGGGT
CTTATAGCTGATATAGATATAGAGTCTGAGAAGTATAGGTGGATGGGTAGTGCTCGAATG
GATTTTTATGCAATACAGCGGATATTTTGTCTTAGAAAGTATCATGGCTGTATCAAATTT
GTGGCTGCACCAGGGTTTGAAAATTTTGGAGAACCAAATGAACTTGGAGGTGAAATTGAT
GAGCTTAACTCGAATTTGGTTATGCAAGATGGCTATTGTGGTCCCACTTTTGACATGAAG
GGTTTCAACCGCAAGATTGAGGGGCCTTTTGTCTCAATCTGGCTTCATAATGTACCTTGG
GGAGGTGAAGATGTTCTGGCAGCACCTGATGCCAAGTTTTCAGATGGTTACTTGGACTTG
ATTGTGATGAAGGATTGCCCAAAAATGTCCTTGGCAACACTGATGAGCGAGATGAACAAA
GGTGGTCATGTTAGATCACCGCATGTCTTGTACTTGAAGGTAAAGGCTTTCGCTTTAGAG
CCTGGTCCACGAGCAGACGACCCAAACAAGGAAGGGATTATTGATGTAGACGGTGAGGTT
CTTGCTAGAGGTAAAGGAACTTACAAGTGTGATCAGAAAACGTTGATGAACTACGACAAA
CTCCATATCAAAGTAGATCAAGGGTTGGCTACTGTATTTTCTCCTATCAACTAA

Peptide Sequence

PEP ID

Solyc02g079030.3.1
PEP Infomation

Sphingosine kinase, putative (AHRD V3.3 *** B9SFA5_RICCO)
Sequence

MDPTDAGAPLLSDRVQISGNVVPMTLTTGGKLRWLDRCLSIAKDVLGFTVEGCRIKINAV
IESGPGICCPGNVGASMRKNFTFEPLSEDSLRLWNQRLQSVIDSLGRPKRLLVLLNPYGG
SRSAPKVFSDDVKPLLEDANIHYTLQETKYRLHAKEVAHSLDLLRYDGVLCVSGDGILVE
VVNGLLEREDWSTAIKMPLGVIPAGTSNGMAKSLLDSVGESCTAFNATLAIIRGHKRSLD
VATVLQGQKKYFSVLMLAWGLIADIDIESEKYRWMGSARMDFYAIQRIFCLRKYHGCIKF
VAAPGFENFGEPNELGGEIDELNSNLVMQDGYCGPTFDMKGFNRKIEGPFVSIWLHNVPW
GGEDVLAAPDAKFSDGYLDLIVMKDCPKMSLATLMSEMNKGGHVRSPHVLYLKVKAFALE
PGPRADDPNKEGIIDVDGEVLARGKGTYKCDQKTLMNYDKLHIKVDQGLATVFSPIN*

Transcript Sequence

Transcript ID

Solyc02g079030.3.1
Transcript Infomation

Sphingosine kinase, putative (AHRD V3.3 *** B9SFA5_RICCO)
Sequence

GCATGTCTAAACCTACCGTTAATCTGATGATCGTGTACGCATCCAGCGTCAGATTTTTGG
GTTGACTTGAAGTTGCAGCAACTAATATTTGCCGTTCACGGAATACAAAGATAACGACAT
TCCTTACTTGTTTCTCGCTACGTTATTGAACCGTTTTTTTCGCCTTATAATAAATCGCTG
CGCCTGACGGAAACCGAGGTATAAACAATGGACCCGACGGACGCCGGAGCTCCTCTTCTA
TCCGACCGGGTTCAAATCAGCGGCAATGTAGTTCCGATGACTCTGACAACTGGAGGAAAA
CTCCGATGGCTTGACCGGTGTTTGTCAATTGCGAAAGATGTCCTCGGTTTTACCGTCGAA
GGTTGTCGGATCAAAATCAATGCCGTCATTGAGAGTGGACCTGGAATTTGCTGCCCCGGT
AATGTAGGAGCTTCGATGAGGAAGAATTTCACTTTTGAGCCATTGTCTGAGGATTCTCTT
CGGCTTTGGAATCAACGACTCCAATCAGTCATCGATTCGCTCGGTCGTCCTAAGAGACTT
CTTGTACTTCTGAATCCATATGGAGGAAGCCGATCTGCACCCAAAGTATTTAGTGACGAT
GTAAAGCCCCTGCTAGAGGATGCAAATATTCACTATACACTGCAAGAAACTAAATATCGG
TTACATGCAAAGGAAGTTGCTCATTCGTTGGATCTTTTGCGATATGATGGAGTTCTTTGT
GTCAGTGGTGATGGAATTTTGGTTGAGGTAGTGAATGGACTGCTTGAAAGGGAGGATTGG
AGTACTGCAATAAAGATGCCTCTTGGAGTAATACCCGCAGGAACTTCAAATGGGATGGCC
AAGTCTCTTCTAGATTCTGTTGGTGAATCTTGTACTGCATTTAATGCAACTCTTGCTATA
ATCAGAGGCCACAAGAGATCACTAGATGTAGCTACAGTTTTACAGGGGCAGAAAAAATAT
TTCAGTGTGCTGATGCTTGCCTGGGGTCTTATAGCTGATATAGATATAGAGTCTGAGAAG
TATAGGTGGATGGGTAGTGCTCGAATGGATTTTTATGCAATACAGCGGATATTTTGTCTT
AGAAAGTATCATGGCTGTATCAAATTTGTGGCTGCACCAGGGTTTGAAAATTTTGGAGAA
CCAAATGAACTTGGAGGTGAAATTGATGAGCTTAACTCGAATTTGGTTATGCAAGATGGC
TATTGTGGTCCCACTTTTGACATGAAGGGTTTCAACCGCAAGATTGAGGGGCCTTTTGTC
TCAATCTGGCTTCATAATGTACCTTGGGGAGGTGAAGATGTTCTGGCAGCACCTGATGCC
AAGTTTTCAGATGGTTACTTGGACTTGATTGTGATGAAGGATTGCCCAAAAATGTCCTTG
GCAACACTGATGAGCGAGATGAACAAAGGTGGTCATGTTAGATCACCGCATGTCTTGTAC
TTGAAGGTAAAGGCTTTCGCTTTAGAGCCTGGTCCACGAGCAGACGACCCAAACAAGGAA
GGGATTATTGATGTAGACGGTGAGGTTCTTGCTAGAGGTAAAGGAACTTACAAGTGTGAT
CAGAAAACGTTGATGAACTACGACAAACTCCATATCAAAGTAGATCAAGGGTTGGCTACT
GTATTTTCTCCTATCAACTAACTTTTATGTGGTTCAGTGTATTCATACGGAGAGAAACTA
ATTCTGACTGGTGGATTCTGTATAGAAAGATGTCAGTAAAATGAAGGATTTATTATAAGA
ATATATACCAACATTCTTCATAGTTATTGCTTCTGAACTTTGTTCTGATGGCTTTTGGTC
GTTAACCTTTGAGAAGAAATAGTTAAATGATCTGTTGTTTGCTCGTTTTTATTGATCTTT
CGTCTTTAGATTTTTTGGTCATGAATATAAAAGTTTTGGTTAGAGGGAGTATCTTTGTCA
ATTTATACAAGGGAAAAAATGATTCATTATGGTATATATAACGTAACGTTGTTGACATGA
AGAGATGTTTGTAGCTTAATAGTCACTTAGTAGTGTATTTAAAATTATAAGACAATGGAA
AGAAAAAACAAATGGTAGGAAGAACAAAAAAACATCAAAATTAAAATTCCAAAAAAGAAT
CATGTTCCTTGTTATGCTTGCATATGGACCATCTATAAAATATAACACTTTTTGCACATT
AGCTAAAGAATAATCACGAATTATGATTAAATGGCAACGAACAAGTACTTTTTTATTTAA
CGACAATATTATAGGGCCACTGACATTATTTCTTCCTATAATTTTCTATTTCCATTAATT
CCATGTAGCAATCATTCTCCCATGAACTACTTAGTACGGTAACATAATTAATAGTGTTAT
TTGTTATCATCAACAAACACAATTAAAAGTATCTTTTTCCCTGTTTAGCATTTAGGGGGC
ATTAAAATAACTCGAATGTATACATAGATATTGTACGTAGCAGGGCATCCTTAAAATAAG
AAACGGAATTAATTAAGACGCATGAAACCTAATCTAAATATCACGATCATAAAAAATGAA
AATTTACTCGAGAAGAGAGGCTATATATAGAGAGAGACAAAAATTGCAAAGAACAAAAAG
GAGAAGGGAAAAGAAGAGAAAAAGTTTTGATTTTACGGATTTTAGAAAAAAAATGGATGA
GATATATAAAGAAAAGAATAAGATTCTTGAAGCTCTCAGCTAAACAGGTATAGAGTCGAT
TGATG