Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc02g078805.1.1
CDS Infomation	Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 *** K4B9A4_SOLLC)
Sequence	ATGGCCTGGTGTAAGTGGTTACCTGATATGGTGATAACTGGTCTTCTGGGTGAAAATCCT GTAACCATTAAGAAAGTTACTTCTCCTTCTCCAAAAGTGGTTCCTCCTTTAAATTCTAAG GAAAACAAGAATCAGTTGAGTCAGAAGCTTAATTCTGTTGTAGGTTTACCTGCAAAAATT AATGGATTGCCAGTAGGTAAATCATTTGTCGTCCCCAGTGTGGTACCTCGTGATATTCCA GAGGAGAAGAAATTGGATACTTGTAGAAGGGAATCTGTTTCTGCAACCAGTGCAAGTAGT GGTATACCACAAAAGCCGTCTCACATAAAGTGCCCATCCAGCAACAACTTTGATATGGAG AAGATCTCTGTGGCTCTTCAGTCTGAAATTGCAGACAACTTGCTGCATACAGTAGATAGT AAGAAGGAATCAGATATTAATAGCAGGCTTATGGCAGATAATGATTCCAGAGAACGTTCC GAGGCAAAAGATTCTGCTGGCAAGCATGGTGGAGAAAAGCTAGAGAAAACTTCATTGCAA CCACCGCTGAATAGTCGGGAGAACCGTAATGTGGGTTCAGAAGGTAGGAAAGAGTTGCAT CCAGTTAGATTTGTGAATGGAGTGGCGGTAGTGCGAGGAAGGACGCGCAGTTTGGTTGAG AGGTTTGAGAAAAGAGAAGGGTTGAACATAGATGATGTCCATAAGCTGGATGTGGTGTCT CATTCTAAAACTGAGGAAACAGATGTATCCCCTTTGCCACCTTCTTGTTGTAAAGATGAG GAACTAGAAACCTTTTCCACAAAATTTGAAGAAGAACCAGAAACATCACCTTTGACAGCT TCTCGTTTTAAAACAGAGGAAGCAATGCGCCCCATGCCTCTAGCTCATTCGAAAGTTGAG GAAACAAATTCATCTGCTTTGCCAGCTTCTCAATATGAAGTTGAGGACTTAGAAGCATCC CATAAGCCAGCTTCTAAATCTAAATCTGAGGAAGTAAGAAAAAACCATTTACCAGCTTCT CATTCTGAAGCTGAGAAATTAGAGGCATCCCTTATGCTAGCTTCTCAGTTTAAATACGAG GAAGTTAGAGAATCCCATTTACCAGCTTCTTGTTCTAAAGCTGAGGAATTTGAAGCATCC CCTATCCTAGCTTCACAGGTTAAATCTGAGGATGTAAGGAAGTCTCGTTTGCCAACTTCT CGTTCTAGAACTGGGGAATTAGGAGCATCCTCTATACCAGCTTCACAGCTTAAACCTGAG AATGTAAGAAGATCCCGTTTATCAGCTTCTCGTTCTAAAGCTGAGGAACTAGAAGCATCC CCTGTGCCTGTTTCTAAGTTTAGAAGTGGAACAAGAACATCCCGTTTGTCGGCTTTTCGT TCAAAAGCTGAGGAAGCTAAAACATCACGATTATTAGCTTCTCGTTCTAAAGCTGAGGAG GCACAAACATTGCGCCTGTTGTCTTCTGGTTCTAATGCTGAGCAACCACAAATAGCTCCT TTGCCGGATGCTAATCAGCAGATCATTGCACGGTGTGAGCCAGTGCAGAATGATGATATC ATTATTGAAGATCTTATGCAACGCCATGATGTGCTGCTAAATTCGTTTAGATCTCGTTTG ACAAAGCTGCAGGTAGTTCGTCACTACTGGGAACGGAATGACATCAGGGGTGCTTTTGAG GCCTTGAGGAAGTTGTCAGATTATTCTGTGAGCATTTATTCTTCTGTCATAGTGGTGCAA GCTGATGTTGTGAGTGTCCTCGTAGATAAAATGGAGATTATCACTTTGGATTTGTTTTCC TTCTTGTTGCCTGTACTGTTAGCCTTACTTGAAACTAAGATAGAAAGGCATGCAAATGTT TCCCTGGAGCTGTTGTTGAAACTTGTTGCAGTCTTTGGACCAGTAGTTCGCTCAGCCGCT TCAGCACGTCCATCTGTTGGGGTTGATCTTCATGCAGAAGCAAGGCAGTGCTTTGCCTAC CTCCAAGATATACAGAAAACACTTCCTGAACTTATAAGCGAGACAACGGAATGGGAAGTT AGCTACTATACAATGTTCTCAAACTTATGTCTCTTTATGGACACCCACAATTTTGCTCCT CGGGTTTCCGTCCTTGCTACCATTTTCACCAACCTTGTAACAGCGGAAAATTGGCAAGAT GGAAATGCAGTGTCTGTCCTCCGCCACTGCAACTGGGTTGGGAGGCAAAGGTAA

Peptide Sequence

PEP ID	Solyc02g078805.1.1
PEP Infomation	Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 *** K4B9A4_SOLLC)
Sequence	MAWCKWLPDMVITGLLGENPVTIKKVTSPSPKVVPPLNSKENKNQLSQKLNSVVGLPAKI NGLPVGKSFVVPSVVPRDIPEEKKLDTCRRESVSATSASSGIPQKPSHIKCPSSNNFDME KISVALQSEIADNLLHTVDSKKESDINSRLMADNDSRERSEAKDSAGKHGGEKLEKTSLQ PPLNSRENRNVGSEGRKELHPVRFVNGVAVVRGRTRSLVERFEKREGLNIDDVHKLDVVS HSKTEETDVSPLPPSCCKDEELETFSTKFEEEPETSPLTASRFKTEEAMRPMPLAHSKVE ETNSSALPASQYEVEDLEASHKPASKSKSEEVRKNHLPASHSEAEKLEASLMLASQFKYE EVRESHLPASCSKAEEFEASPILASQVKSEDVRKSRLPTSRSRTGELGASSIPASQLKPE NVRRSRLSASRSKAEELEASPVPVSKFRSGTRTSRLSAFRSKAEEAKTSRLLASRSKAEE AQTLRLLSSGSNAEQPQIAPLPDANQQIIARCEPVQNDDIIIEDLMQRHDVLLNSFRSRL TKLQVVRHYWERNDIRGAFEALRKLSDYSVSIYSSVIVVQADVVSVLVDKMEIITLDLFS FLLPVLLALLETKIERHANVSLELLLKLVAVFGPVVRSAASARPSVGVDLHAEARQCFAY LQDIQKTLPELISETTEWEVSYYTMFSNLCLFMDTHNFAPRVSVLATIFTNLVTAENWQD GNAVSVLRHCNWVGRQR*

Transcript Sequence

Transcript ID	Solyc02g078805.1.1
Transcript Infomation	Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 *** K4B9A4_SOLLC)
Sequence	ATGGCCTGGTGTAAGTGGTTACCTGATATGGTGATAACTGGTCTTCTGGGTGAAAATCCT GTAACCATTAAGAAAGTTACTTCTCCTTCTCCAAAAGTGGTTCCTCCTTTAAATTCTAAG GAAAACAAGAATCAGTTGAGTCAGAAGCTTAATTCTGTTGTAGGTTTACCTGCAAAAATT AATGGATTGCCAGTAGGTAAATCATTTGTCGTCCCCAGTGTGGTACCTCGTGATATTCCA GAGGAGAAGAAATTGGATACTTGTAGAAGGGAATCTGTTTCTGCAACCAGTGCAAGTAGT GGTATACCACAAAAGCCGTCTCACATAAAGTGCCCATCCAGCAACAACTTTGATATGGAG AAGATCTCTGTGGCTCTTCAGTCTGAAATTGCAGACAACTTGCTGCATACAGTAGATAGT AAGAAGGAATCAGATATTAATAGCAGGCTTATGGCAGATAATGATTCCAGAGAACGTTCC GAGGCAAAAGATTCTGCTGGCAAGCATGGTGGAGAAAAGCTAGAGAAAACTTCATTGCAA CCACCGCTGAATAGTCGGGAGAACCGTAATGTGGGTTCAGAAGGTAGGAAAGAGTTGCAT CCAGTTAGATTTGTGAATGGAGTGGCGGTAGTGCGAGGAAGGACGCGCAGTTTGGTTGAG AGGTTTGAGAAAAGAGAAGGGTTGAACATAGATGATGTCCATAAGCTGGATGTGGTGTCT CATTCTAAAACTGAGGAAACAGATGTATCCCCTTTGCCACCTTCTTGTTGTAAAGATGAG GAACTAGAAACCTTTTCCACAAAATTTGAAGAAGAACCAGAAACATCACCTTTGACAGCT TCTCGTTTTAAAACAGAGGAAGCAATGCGCCCCATGCCTCTAGCTCATTCGAAAGTTGAG GAAACAAATTCATCTGCTTTGCCAGCTTCTCAATATGAAGTTGAGGACTTAGAAGCATCC CATAAGCCAGCTTCTAAATCTAAATCTGAGGAAGTAAGAAAAAACCATTTACCAGCTTCT CATTCTGAAGCTGAGAAATTAGAGGCATCCCTTATGCTAGCTTCTCAGTTTAAATACGAG GAAGTTAGAGAATCCCATTTACCAGCTTCTTGTTCTAAAGCTGAGGAATTTGAAGCATCC CCTATCCTAGCTTCACAGGTTAAATCTGAGGATGTAAGGAAGTCTCGTTTGCCAACTTCT CGTTCTAGAACTGGGGAATTAGGAGCATCCTCTATACCAGCTTCACAGCTTAAACCTGAG AATGTAAGAAGATCCCGTTTATCAGCTTCTCGTTCTAAAGCTGAGGAACTAGAAGCATCC CCTGTGCCTGTTTCTAAGTTTAGAAGTGGAACAAGAACATCCCGTTTGTCGGCTTTTCGT TCAAAAGCTGAGGAAGCTAAAACATCACGATTATTAGCTTCTCGTTCTAAAGCTGAGGAG GCACAAACATTGCGCCTGTTGTCTTCTGGTTCTAATGCTGAGCAACCACAAATAGCTCCT TTGCCGGATGCTAATCAGCAGATCATTGCACGGTGTGAGCCAGTGCAGAATGATGATATC ATTATTGAAGATCTTATGCAACGCCATGATGTGCTGCTAAATTCGTTTAGATCTCGTTTG ACAAAGCTGCAGGTAGTTCGTCACTACTGGGAACGGAATGACATCAGGGGTGCTTTTGAG GCCTTGAGGAAGTTGTCAGATTATTCTGTGAGCATTTATTCTTCTGTCATAGTGGTGCAA GCTGATGTTGTGAGTGTCCTCGTAGATAAAATGGAGATTATCACTTTGGATTTGTTTTCC TTCTTGTTGCCTGTACTGTTAGCCTTACTTGAAACTAAGATAGAAAGGCATGCAAATGTT TCCCTGGAGCTGTTGTTGAAACTTGTTGCAGTCTTTGGACCAGTAGTTCGCTCAGCCGCT TCAGCACGTCCATCTGTTGGGGTTGATCTTCATGCAGAAGCAAGGCAGTGCTTTGCCTAC CTCCAAGATATACAGAAAACACTTCCTGAACTTATAAGCGAGACAACGGAATGGGAAGTT AGCTACTATACAATGTTCTCAAACTTATGTCTCTTTATGGACACCCACAATTTTGCTCCT CGGGTTTCCGTCCTTGCTACCATTTTCACCAACCTTGTAACAGCGGAAAATTGGCAAGAT GGAAATGCAGTGTCTGTCCTCCGCCACTGCAACTGGGTTGGGAGGCAAAGGTAA