Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g078350.3.1
CDS Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9H2W0_POPTR)
Sequence

ATGCAAGTGAATCGCCGGATTATCCAAGCCCTAACCGGAATTACTAATCGATTTTACCAT
TCCGACAAGCCGAAGAAAGTGTCACTCTACTCTAAAATAAGTCCACTGGGAAACCCTAGC
TGTAGTGTAACCAATGAACTAGATGAATGGGTTTGCAAGGGCAATAAAATCCGATTCGCG
GAGATTCAACGCATCATTCTTGATCTTCGTAAACGCAAACGCTTCGGTCAGGCCCTGGAG
GCTTCCGAATGGTTGAAGATTTCTGGTATTTTCACTTTTTCATCAACTGAACATGCAGTA
CAACTGGATCTGATTGGTAGGGTTCATGGGTTTCCTGATGCTGAAAGCTACTTCAATAAC
TTGAGCAAAGAAGATAAGAATGATAAGACATATGGTGCTCTTCTACATTGTTATGTTCGC
CAGTGCCAAATGGAAAAGGCATTGACACATCTGCGGAAGATGGAGGAGGAGGGTGTCTCT
CTATCTTCTGTGGCCTTCAACGATATAATGTCACTGTACACGAGAACTGGTGAGTATGAA
AGGATCCCTGAAATGCTACACCATATGAAGGAAATTGGGGTCCAACCTAACAATTTAAGT
TACAGAATCTGTATCAATTCGTATGGAGCAAGATCAGATATTGAGGGGATGGAGAGGGTC
TTAAATGAAATGGAGAATCAATCCTTCATTGTCATGGACTGGAACACCTATGCTGCTGTG
GCAAATACATATGTTAAAGAAGGCCTAAATGATAAAGCAAACAGTTTCCTCAAGAAAGCG
GAGGAGAAGATCGATAATAAAGAAGGGATTGGGTATAACTACCTCATCTCTGTACATTCT
AAACTAGGAAACAAAGATGAAGTCATAAGATTATGGTTTCTCGAGAAGAGTGCTCTAAAG
AGGTGCATAAATCGGGATTATATAAATATGTTAGAAGCTCTTGTGAGACTTGATTCACTT
GAAGAAGCGGAGCAGTTGCTCAAAGAGTGGGAGACATCTGGTAACTGTTATGATATCAGA
GTGCCATACATAGTCATTATAGGGTATATGGATAAACAGCTATATGAAAAGGCAGAGACC
ATGCTTGAAGATATATCTACAAAAGGGAAGATACTAACACCAAATATTTGGGGGAGGCTG
GCGGCAGGCTACCTAGATAAAGATAAGTTTGAGAGGGCTGTGAAATGCATGAAAGTTGCT
CTTTCCTTGAAGAAGGATAGAAAAGGATGGAAGCCTGACCCTAAGGTCATCATGAGAATA
CTCAGTTTGTTTGCGGAGAATGGCAATGTGAATGACGCTGAATCATTTTTTCACTCACTG
AGGCCCATTGTCGCTGTAAACAGAGAGATGTATCATGCCTTACTAAAATCATATATAGCA
GGTGGTAAAGAAGTTGAAAGCCTTCTAAACAATATGAGAGATGATAACATTGACGAAAAT
GAAGAAACAAAAGTGATACTTGGAATAAACCAATGA

Peptide Sequence

PEP ID

Solyc02g078350.3.1
PEP Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9H2W0_POPTR)
Sequence

MQVNRRIIQALTGITNRFYHSDKPKKVSLYSKISPLGNPSCSVTNELDEWVCKGNKIRFA
EIQRIILDLRKRKRFGQALEASEWLKISGIFTFSSTEHAVQLDLIGRVHGFPDAESYFNN
LSKEDKNDKTYGALLHCYVRQCQMEKALTHLRKMEEEGVSLSSVAFNDIMSLYTRTGEYE
RIPEMLHHMKEIGVQPNNLSYRICINSYGARSDIEGMERVLNEMENQSFIVMDWNTYAAV
ANTYVKEGLNDKANSFLKKAEEKIDNKEGIGYNYLISVHSKLGNKDEVIRLWFLEKSALK
RCINRDYINMLEALVRLDSLEEAEQLLKEWETSGNCYDIRVPYIVIIGYMDKQLYEKAET
MLEDISTKGKILTPNIWGRLAAGYLDKDKFERAVKCMKVALSLKKDRKGWKPDPKVIMRI
LSLFAENGNVNDAESFFHSLRPIVAVNREMYHALLKSYIAGGKEVESLLNNMRDDNIDEN
EETKVILGINQ*

Transcript Sequence

Transcript ID

Solyc02g078350.3.1
Transcript Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9H2W0_POPTR)
Sequence

AATCACAGTGCTTCACAGAGCAGGAATTTTTGCCCCAAATTTCACCGGAAAATGCAAGTG
AATCGCCGGATTATCCAAGCCCTAACCGGAATTACTAATCGATTTTACCATTCCGACAAG
CCGAAGAAAGTGTCACTCTACTCTAAAATAAGTCCACTGGGAAACCCTAGCTGTAGTGTA
ACCAATGAACTAGATGAATGGGTTTGCAAGGGCAATAAAATCCGATTCGCGGAGATTCAA
CGCATCATTCTTGATCTTCGTAAACGCAAACGCTTCGGTCAGGCCCTGGAGGCTTCCGAA
TGGTTGAAGATTTCTGGTATTTTCACTTTTTCATCAACTGAACATGCAGTACAACTGGAT
CTGATTGGTAGGGTTCATGGGTTTCCTGATGCTGAAAGCTACTTCAATAACTTGAGCAAA
GAAGATAAGAATGATAAGACATATGGTGCTCTTCTACATTGTTATGTTCGCCAGTGCCAA
ATGGAAAAGGCATTGACACATCTGCGGAAGATGGAGGAGGAGGGTGTCTCTCTATCTTCT
GTGGCCTTCAACGATATAATGTCACTGTACACGAGAACTGGTGAGTATGAAAGGATCCCT
GAAATGCTACACCATATGAAGGAAATTGGGGTCCAACCTAACAATTTAAGTTACAGAATC
TGTATCAATTCGTATGGAGCAAGATCAGATATTGAGGGGATGGAGAGGGTCTTAAATGAA
ATGGAGAATCAATCCTTCATTGTCATGGACTGGAACACCTATGCTGCTGTGGCAAATACA
TATGTTAAAGAAGGCCTAAATGATAAAGCAAACAGTTTCCTCAAGAAAGCGGAGGAGAAG
ATCGATAATAAAGAAGGGATTGGGTATAACTACCTCATCTCTGTACATTCTAAACTAGGA
AACAAAGATGAAGTCATAAGATTATGGTTTCTCGAGAAGAGTGCTCTAAAGAGGTGCATA
AATCGGGATTATATAAATATGTTAGAAGCTCTTGTGAGACTTGATTCACTTGAAGAAGCG
GAGCAGTTGCTCAAAGAGTGGGAGACATCTGGTAACTGTTATGATATCAGAGTGCCATAC
ATAGTCATTATAGGGTATATGGATAAACAGCTATATGAAAAGGCAGAGACCATGCTTGAA
GATATATCTACAAAAGGGAAGATACTAACACCAAATATTTGGGGGAGGCTGGCGGCAGGC
TACCTAGATAAAGATAAGTTTGAGAGGGCTGTGAAATGCATGAAAGTTGCTCTTTCCTTG
AAGAAGGATAGAAAAGGATGGAAGCCTGACCCTAAGGTCATCATGAGAATACTCAGTTTG
TTTGCGGAGAATGGCAATGTGAATGACGCTGAATCATTTTTTCACTCACTGAGGCCCATT
GTCGCTGTAAACAGAGAGATGTATCATGCCTTACTAAAATCATATATAGCAGGTGGTAAA
GAAGTTGAAAGCCTTCTAAACAATATGAGAGATGATAACATTGACGAAAATGAAGAAACA
AAAGTGATACTTGGAATAAACCAATGAGGTTCGAAAAGTTACATATTCTGTAGGAATTTC
TTCAATTGTCAATTCTAGATAACTGTTTAGTCTAGTCATGGACATGTGTTTGTCCAGGCT
TGCCATGTTCATAACAGTTTATGCCGATCCTTTGTTTTTCCTCCTTCCATAGTTCTTGGT
TTGTTTTCTTCTCCTCATAATGTTGTCCATTCCCTTGAAAATCATTGCCAAGTCTTTCTG
ATTTTCTTCATCATTATCTAATTCATTTTCTATTTCCTCAAAGAAGGTTTTGAATATACA
ACATTCAATCTCTTTCTTTCCCTTCCATGGTTTTGAAGACAAGTTTTCTTGTAAATGATA
AGC