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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g078270.3.1
CDS Infomation

LSD1 zinc finger family protein (AHRD V3.3 *-* AT4G20380.7)
Sequence

ATGGAAGAAAAGTTGAGCCACATCGAAAATCAGCAATTAGATGATGATGAAGAAGAAGAT
GAGGGTCCACCGCCTGGTTTCGACTCTTTAGCTGTACCATCGCAAAACACCAATGTCGTC
ATAGATGAAGATGATGATGAAGGACCACCTCCAGGTTGGCCATCAATTCCTCAGCAACAC
AACCTCCAGACTACTGATGTAGAGATGGGGAGCAAAGAACACAAATCGGAAGATGATGAA
GATGGTCCGCCACCTGGGTGGAACACTGTAATCTCACAGAAAAAATCGCCATCTTCACCG
CCAACCCTAGAAGCAGTTATTTGTGATATAGAAATGGAGAAGAAAGAAGAAATCATTAAA
AATGAAGATAATGGTCCACCGCCGATATGGCAGTTGACCCCTAAACTGCCAGCGCTACAA
ACATCTACACCACCATCATGGACACAAGGAGCTTCTCTTGAAGATATAGAAATGGAGAAG
AAAGAGGAAGCCGTTGAAGATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCT
CAACTACTGCCTCTACAGACATCTACACCACCATCAGGGATACAAGGAGCGCCTCTTGCT
GACGTTGAAATGGCGAGCAACCAGGACTGTGATGTTGAAAAGGAAGGACATCCACTGGGA
TCGCCTACACCACCACTGCAGTCGTCATCACCGGTTGCTTCTTCTGAAATGGATATGGGT
CGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATG
TCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTT
TCTTCCGAACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAA
GGGGCTAAATTGGTGAAGTGTTCATGCTGCCAGACCGTCAATCTTGTGCTAGAAGCTCAT
GAGGTTGGACAAGTTAAGTGTGGGGGTTGTGCAGTGCTGCTCATGTATCCGTATGGGGCG
CCATCAGTTAGATGTTCATCTTGTCGTCACATGACAAAAATTTGGGCCCACAACAGACGA
CCTCCTCAGTCAGTGCAACAGCCTCGAAGAAGACATCCTTCCTACCAAGTTCATTAG

Peptide Sequence

PEP ID

Solyc02g078270.3.1
PEP Infomation

LSD1 zinc finger family protein (AHRD V3.3 *-* AT4G20380.7)
Sequence

MEEKLSHIENQQLDDDEEEDEGPPPGFDSLAVPSQNTNVVIDEDDDEGPPPGWPSIPQQH
NLQTTDVEMGSKEHKSEDDEDGPPPGWNTVISQKKSPSSPPTLEAVICDIEMEKKEEIIK
NEDNGPPPIWQLTPKLPALQTSTPPSWTQGASLEDIEMEKKEEAVEDEDNGPPPGWQLTP
QLLPLQTSTPPSGIQGAPLADVEMASNQDCDVEKEGHPLGSPTPPLQSSSPVASSEMDMG
RKQEGTKNEEERPPSEKQPMSHLVQMKPIVPQASSHAATVSSELGQMVCGGCQQLLSYSQ
GAKLVKCSCCQTVNLVLEAHEVGQVKCGGCAVLLMYPYGAPSVRCSSCRHMTKIWAHNRR
PPQSVQQPRRRHPSYQVH*

Transcript Sequence

Transcript ID

Solyc02g078270.3.1
Transcript Infomation

LSD1 zinc finger family protein (AHRD V3.3 *-* AT4G20380.7)
Sequence

ATGGAAGAAAAGTTGAGCCACATCGAAAATCAGCAATTAGATGATGATGAAGAAGAAGAT
GAGGGTCCACCGCCTGGTTTCGACTCTTTAGCTGTACCATCGCAAAACACCAATGTCGTC
ATAGATGAAGATGATGATGAAGGACCACCTCCAGGTTGGCCATCAATTCCTCAGCAACAC
AACCTCCAGACTACTGATGTAGAGATGGGGAGCAAAGAACACAAATCGGAAGATGATGAA
GATGGTCCGCCACCTGGGTGGAACACTGTAATCTCACAGAAAAAATCGCCATCTTCACCG
CCAACCCTAGAAGCAGTTATTTGTGATATAGAAATGGAGAAGAAAGAAGAAATCATTAAA
AATGAAGATAATGGTCCACCGCCGATATGGCAGTTGACCCCTAAACTGCCAGCGCTACAA
ACATCTACACCACCATCATGGACACAAGGAGCTTCTCTTGAAGATATAGAAATGGAGAAG
AAAGAGGAAGCCGTTGAAGATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCT
CAACTACTGCCTCTACAGACATCTACACCACCATCAGGGATACAAGGAGCGCCTCTTGCT
GACGTTGAAATGGCGAGCAACCAGGACTGTGATGTTGAAAAGGAAGGACATCCACTGGGA
TCGCCTACACCACCACTGCAGTCGTCATCACCGGTTGCTTCTTCTGAAATGGATATGGGT
CGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATG
TCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTT
TCTTCCGAACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAA
GGGGCTAAATTGGTGAAGTGTTCATGCTGCCAGACCGTCAATCTTGTGCTAGAAGCTCAT
GAGGTTGGACAAGTTAAGTGTGGGGGTTGTGCAGTGCTGCTCATGTATCCGTATGGGGCG
CCATCAGTTAGATGTTCATCTTGTCGTCACATGACAAAAATTTGGGCCCACAACAGACGA
CCTCCTCAGTCAGTGCAACAGCCTCGAAGAAGACATCCTTCCTACCAAGTTCATTAGCTT
GCTTATCTCGATCTGATTTTGGGGAATCCATCATGTAGATGCATTGTTTATATGAAACTT
CTGGGCTAGTTAGTTGACATCAGGTTACTGCTTGCTTCATGGCTTTGGCATTTCCCTTGG
ATTTGTAAAATCTTTACCGTATCAGAAATCTGTGACAATCTTTACCGTGTCTGGATGTTG
GTGACACTAGTTTTGGTAGTTTAGTTTCGCCTCATCGAGCTCAGGAAACCGGTTAATCAG
TATGCAATTTATAAGAGTGAGGACTGAGGACTTCATTGCACTCCTTAATTTTGCAATGAT
ATCTCCATGTCTTATTACTTCTAATATTGCACAATGAAAATTTTCTATTTATTTTGAAGG
TAATATCAGGTGGTTTCTA