Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc02g078210.3.1
CDS Infomation	Ubiquitin-conjugating enzyme family protein (AHRD V3.3 *** U5FV88_POPTR)
Sequence	ATGGATACATCTCTAAGTGACTTCGATAGTTTCAGCGAGAGCAGCAGTTATGATGATCAG GATTATGTTGAATATCTGTATGGTGGGCATGCATGTTCTATTCTTTCAAGTCTTGAGGAA AGCATCGGTAAGATCGATGATTTCCTCTCTTTCGAGAGGGTGTTCATGTATGGAGACATA GTATGTTCCGAAAAAGAACCATCTGGACAGATGGGAAAAGTGGTCAACGTCGAGATGACT GTTGACCTGGAATGTATTTATGGAAGCAAAATACAAGATGTTAACTCAAAAGATCTTGTA AAAATACGTCCAATTTCTGTTGGGGATTATGTAGTGATGGGCCCATGGCTAGGGAAAGTT GAAAAGATTGTCGATAAAATTAAAGTTCTCTTTGATGATGGTGCAAAGTCTGAATTTTCA GCAGAAGCTTCAGAAATACTCACACCCATTTCCCCTGATTTAGTCGAAGACCCCCAATTT CCTTTCTATCCGGGTCAAAGGGTGCAAGTTCAGTCTGTATCTGCCTCCGGGTCAACCAGT TGGTTATGTGGTGTAAGAAGTGGCAAAAGAGAGCAAGGTACCATTTATGCTGTGGAGGCT GGAGTGGTGCATGTAGATTGGATTGGCTGTGGCAGTCTAGGTTGTGAAAAGATGCCTAGT CCTCCAACTTTGCAGGACTCAGAAAAGTTGACCTTGTTGTCTTGCTACTCCCATGCAAAG TGGCAGCTTGGAGATTGCTGTGTACTTCCTGTTGCTGACTCTAAGAACATTGTGCGAAAG AGTATTCAAAGCTCACCTCCCTGTGGACCAATGGAACAGGATAGGCAACTAAACAAGGCA TCTCAGAAAACTAATAGGAGCTCAACTTTTTTGCAAGTTGCTGTAATTTCAAAGACAAGG ACAAAAGTTGATATTTTATGGCAGGATGGAAGCGTGACTACTGGATTGGACTCAGATTCT GTTTTCCCTGTCAATATTGTGGATGCTCATGAGTTTTGGCCTGAGCATTTCGTGCTTGAG AAGGGAATGGGTGATGACTCATCTGTTCCCAGTCCAAAACGCTGGGGTGTGGTGAGATGC GTTGACGCAAAGGAGCGAACAGTGAAGGTAAAATGGACAACTTATTCCTTGCATGAACCA AACAACTTCAGGGTTGAGCAAAGTGAAGAAATAGTGAGTGCGTATGAACTGATGGACCAT CCAGACTACTCATACTGTTTAGGTGATGCGGTTTGCAAGTTTTGTGAGGATCAGGTTTTC AGTCTTGAGGGGAAGAGCTTAAGTACGCACATGTTCTCTGAGACTGGCATGGACAGCAAC ACTGATCTCAAGAATGTTGATACTGGAAAGGATAATTTGGATTTCCCCAAATATGACCAT TTATCTTGTATCGGTATTATTGTTGGCTTCAAAGATGGCGATATTGAAATAAAATGGGCT ACTGGTTTTACAAGCATGGTTGCACCCTTTGAAATCTACCGGATAGATAAATGTGAAGCT GCTGTTTCCATTAGTGCATCCAATGCTGAAAATGCTGAGCCATCAAACGTGGAGATGAGT TCAAATGAAAGTCAGCTCTCAAAGCATGAGGAAAAGGGCTTGCTGAAGTTTGGTAGCAAT AGTGAAAGTTGCAATGAGAGCTTGTGGGACTCTGGTTCCTGTTTGATTTCTCGAACTGCT GTTGGCTTTTTCTCTAGTATCACCTCAACTCTTTTTGGCTCATTGAGCATATCACTTTTT GGTACATACCAAACTATATCAGAAGAAGGCCAGAAATCAAGGATTGTCGATGAGGAGGAA GTCATAGAGCTTAGCCATCTGAATGCAGGAATTCCCACATTTGAGAACTTGAAGGCTTCG CCTGAAATGGAACTAGAGCAAGTACAGGAAACAACTGAGGGCCAAAAAGATGATGCTTTG CCATCTTCCAGCAATCTGCCTGAACATTTTAAACAGTTTGATGTGGTCACTGATTTCTCA GACCACCATTTTGCAGATGGTGCTGGAAAGGCCCAGCTATCCCAGGTGAGAAGAGGTTGG CTGAAGAAGGTCCAGCAAGAGTGGAGCATTTTGGAACGTGATCTTCCTGAGACTATCTAT GTACGCATCTATGAGGAAAGAACTGATTTGATCCGAGCTGCCATTATTGGTGCACCTGCG ACTCCGTATCATGATGGAATCTTCTTCTTTGATATTTACCTACCTCCGGACTATCCTCAT GAGCCACCTATGGTCTACTATCACTCTGGCGGGCTTCGTGTCAATCCTAACCTGTATGAG TCAGGAAAGGTTTGCCTCAGCCTCTTAAACACATGGACGGGCTCTGGAAATGAAGTGTGG AACCCCAAAAGTTCCACGATTCTACAAGTTCTCCTCTCTCTTCAAGCTCTTGTGCTCAAT GAAAAGCCTTATTTCAATGAGGCTGGATATGATGCGCAGATTGGTAAAGCTGACGGTGAA AAGAACTCCGTCAGCTATAATGAAAATGCTTTCCTTGTTACCTGGAAGTCCATGTTATAC CTGCTCCACAAGCCACCCAAGCATTTTGATGCACTTGTGCAAGAGCACTTTGGTAACCGA TGGAAAAACATTTTGTTAGCTTGTAAGGCGTACATGGATGGCGCACCAGTTGGTTCAGCA TTCCAACCCAAGAACCAGGACAAAGAACCAATAAAAGGAAGCTCTACTGGATTCAAAATT ATGCTTGGCAAGCTTTACCCTAAACTCGTGGAGGCATTTTCCAACAAAGGTATCGATTGC AGTCAGTTGTCCGATTAA

Peptide Sequence

PEP ID	Solyc02g078210.3.1
PEP Infomation	Ubiquitin-conjugating enzyme family protein (AHRD V3.3 *** U5FV88_POPTR)
Sequence	MDTSLSDFDSFSESSSYDDQDYVEYLYGGHACSILSSLEESIGKIDDFLSFERVFMYGDI VCSEKEPSGQMGKVVNVEMTVDLECIYGSKIQDVNSKDLVKIRPISVGDYVVMGPWLGKV EKIVDKIKVLFDDGAKSEFSAEASEILTPISPDLVEDPQFPFYPGQRVQVQSVSASGSTS WLCGVRSGKREQGTIYAVEAGVVHVDWIGCGSLGCEKMPSPPTLQDSEKLTLLSCYSHAK WQLGDCCVLPVADSKNIVRKSIQSSPPCGPMEQDRQLNKASQKTNRSSTFLQVAVISKTR TKVDILWQDGSVTTGLDSDSVFPVNIVDAHEFWPEHFVLEKGMGDDSSVPSPKRWGVVRC VDAKERTVKVKWTTYSLHEPNNFRVEQSEEIVSAYELMDHPDYSYCLGDAVCKFCEDQVF SLEGKSLSTHMFSETGMDSNTDLKNVDTGKDNLDFPKYDHLSCIGIIVGFKDGDIEIKWA TGFTSMVAPFEIYRIDKCEAAVSISASNAENAEPSNVEMSSNESQLSKHEEKGLLKFGSN SESCNESLWDSGSCLISRTAVGFFSSITSTLFGSLSISLFGTYQTISEEGQKSRIVDEEE VIELSHLNAGIPTFENLKASPEMELEQVQETTEGQKDDALPSSSNLPEHFKQFDVVTDFS DHHFADGAGKAQLSQVRRGWLKKVQQEWSILERDLPETIYVRIYEERTDLIRAAIIGAPA TPYHDGIFFFDIYLPPDYPHEPPMVYYHSGGLRVNPNLYESGKVCLSLLNTWTGSGNEVW NPKSSTILQVLLSLQALVLNEKPYFNEAGYDAQIGKADGEKNSVSYNENAFLVTWKSMLY LLHKPPKHFDALVQEHFGNRWKNILLACKAYMDGAPVGSAFQPKNQDKEPIKGSSTGFKI MLGKLYPKLVEAFSNKGIDCSQLSD*

Transcript Sequence

Transcript ID	Solyc02g078210.3.1
Transcript Infomation	Ubiquitin-conjugating enzyme family protein (AHRD V3.3 *** U5FV88_POPTR)
Sequence	ATTCAACTCACACATAGTGGAAGAGAGTTGATTAGAGAAAAAGGGGTTGGTGATTTTGCA ACTTTAATGCTGCCATGTTTGTAAGATTTGAATTCCCTTAATCCTTCTTTTTCCTGGCTT TTTTGGTTATGGGTCATCACTATTTTTGTTTGGAAGGAAAAAGAAAGGATTTTTTCTCTG GAAAGTGAAGAAGTTTGCTAGAGAATAGGGATTGGTTGGAGTGGGCTTAGTGTTTTTTTG TCAAAGTATCTATTCTGGGGTTGCTTCAATTTACTCATTTAGAGGTGTCTTTGGTTGATA TGAGCATAAGAGGGAAAAAAGTTGGTTTCACGAATATTTTGAAGCAGCTCAGTTTGATTT GACTCAGAAGAAAGTTGGGTTCCATGGTCAAGCGACAACATTTCTTGTGATTTCCTGATA GTTCTGTCCATCAGATCAACCAACATTTTCTAAGCAGCTTCCTTTGCTGAACATTACTCA AGAAAGGATATATCTTTCGCATTTTAAGCACTTTAGCCAACGCATCTGTCTATTTCTGGT TGATTGTACTGTCCAAGACATCTCTTTTGGGGCAAATCTTTTTTTTGGCAAAATTACCCT GGCCTTTGAGAGGAGAAAATTCTTTTAAGCAAAAGCATATATTTACATATGCGTCTCTCT ATTGGCTCTGCTGGGCAAATCTCCTTTGCAAATTGTAAGTTCCGTGGTTTGGTGGTTCTT TGCCGTGGTTATATTCTAGGTGTCATCTTCCTTTGTGGGTAAACAATTGATCCATATTTC TGGCAAGTTGGACTTCCTCTTCAACCTGTTAGGAAGAGCTGAAGCGGCAGTTCTACTAGG GACCACAATCAATTGGAACTTTCTTCTCCGCACAACCCTTCTAGTGGACTTCGTTTCTCT GGGCAAATCTCCTTTGGCATTTCGGAGTTGTTAGACTCCACCACCCCTTTGTCTTTAGGG CAAATCTCCTTTGGCATTATCTCCTTTTGGAGATACTATCTTGGTCTCTGTTTAAAAAAC AGATTGACCTAAAGATCTTATTATCTTTAGCAATATACATCAGTCATCGTTGGCAGTATT GGTATTCGTCATCAGCAAGTGATCCATATCAATTTGTAAGCTTGTATTACGCAGCAAGGA TTTGCAAGTGACTTTTGTGAATATATTTCTCTAGATTCCACATTATGGATACATCTCTAA GTGACTTCGATAGTTTCAGCGAGAGCAGCAGTTATGATGATCAGGATTATGTTGAATATC TGTATGGTGGGCATGCATGTTCTATTCTTTCAAGTCTTGAGGAAAGCATCGGTAAGATCG ATGATTTCCTCTCTTTCGAGAGGGTGTTCATGTATGGAGACATAGTATGTTCCGAAAAAG AACCATCTGGACAGATGGGAAAAGTGGTCAACGTCGAGATGACTGTTGACCTGGAATGTA TTTATGGAAGCAAAATACAAGATGTTAACTCAAAAGATCTTGTAAAAATACGTCCAATTT CTGTTGGGGATTATGTAGTGATGGGCCCATGGCTAGGGAAAGTTGAAAAGATTGTCGATA AAATTAAAGTTCTCTTTGATGATGGTGCAAAGTCTGAATTTTCAGCAGAAGCTTCAGAAA TACTCACACCCATTTCCCCTGATTTAGTCGAAGACCCCCAATTTCCTTTCTATCCGGGTC AAAGGGTGCAAGTTCAGTCTGTATCTGCCTCCGGGTCAACCAGTTGGTTATGTGGTGTAA GAAGTGGCAAAAGAGAGCAAGGTACCATTTATGCTGTGGAGGCTGGAGTGGTGCATGTAG ATTGGATTGGCTGTGGCAGTCTAGGTTGTGAAAAGATGCCTAGTCCTCCAACTTTGCAGG ACTCAGAAAAGTTGACCTTGTTGTCTTGCTACTCCCATGCAAAGTGGCAGCTTGGAGATT GCTGTGTACTTCCTGTTGCTGACTCTAAGAACATTGTGCGAAAGAGTATTCAAAGCTCAC CTCCCTGTGGACCAATGGAACAGGATAGGCAACTAAACAAGGCATCTCAGAAAACTAATA GGAGCTCAACTTTTTTGCAAGTTGCTGTAATTTCAAAGACAAGGACAAAAGTTGATATTT TATGGCAGGATGGAAGCGTGACTACTGGATTGGACTCAGATTCTGTTTTCCCTGTCAATA TTGTGGATGCTCATGAGTTTTGGCCTGAGCATTTCGTGCTTGAGAAGGGAATGGGTGATG ACTCATCTGTTCCCAGTCCAAAACGCTGGGGTGTGGTGAGATGCGTTGACGCAAAGGAGC GAACAGTGAAGGTAAAATGGACAACTTATTCCTTGCATGAACCAAACAACTTCAGGGTTG AGCAAAGTGAAGAAATAGTGAGTGCGTATGAACTGATGGACCATCCAGACTACTCATACT GTTTAGGTGATGCGGTTTGCAAGTTTTGTGAGGATCAGGTTTTCAGTCTTGAGGGGAAGA GCTTAAGTACGCACATGTTCTCTGAGACTGGCATGGACAGCAACACTGATCTCAAGAATG TTGATACTGGAAAGGATAATTTGGATTTCCCCAAATATGACCATTTATCTTGTATCGGTA TTATTGTTGGCTTCAAAGATGGCGATATTGAAATAAAATGGGCTACTGGTTTTACAAGCA TGGTTGCACCCTTTGAAATCTACCGGATAGATAAATGTGAAGCTGCTGTTTCCATTAGTG CATCCAATGCTGAAAATGCTGAGCCATCAAACGTGGAGATGAGTTCAAATGAAAGTCAGC TCTCAAAGCATGAGGAAAAGGGCTTGCTGAAGTTTGGTAGCAATAGTGAAAGTTGCAATG AGAGCTTGTGGGACTCTGGTTCCTGTTTGATTTCTCGAACTGCTGTTGGCTTTTTCTCTA GTATCACCTCAACTCTTTTTGGCTCATTGAGCATATCACTTTTTGGTACATACCAAACTA TATCAGAAGAAGGCCAGAAATCAAGGATTGTCGATGAGGAGGAAGTCATAGAGCTTAGCC ATCTGAATGCAGGAATTCCCACATTTGAGAACTTGAAGGCTTCGCCTGAAATGGAACTAG AGCAAGTACAGGAAACAACTGAGGGCCAAAAAGATGATGCTTTGCCATCTTCCAGCAATC TGCCTGAACATTTTAAACAGTTTGATGTGGTCACTGATTTCTCAGACCACCATTTTGCAG ATGGTGCTGGAAAGGCCCAGCTATCCCAGGTGAGAAGAGGTTGGCTGAAGAAGGTCCAGC AAGAGTGGAGCATTTTGGAACGTGATCTTCCTGAGACTATCTATGTACGCATCTATGAGG AAAGAACTGATTTGATCCGAGCTGCCATTATTGGTGCACCTGCGACTCCGTATCATGATG GAATCTTCTTCTTTGATATTTACCTACCTCCGGACTATCCTCATGAGCCACCTATGGTCT ACTATCACTCTGGCGGGCTTCGTGTCAATCCTAACCTGTATGAGTCAGGAAAGGTTTGCC TCAGCCTCTTAAACACATGGACGGGCTCTGGAAATGAAGTGTGGAACCCCAAAAGTTCCA CGATTCTACAAGTTCTCCTCTCTCTTCAAGCTCTTGTGCTCAATGAAAAGCCTTATTTCA ATGAGGCTGGATATGATGCGCAGATTGGTAAAGCTGACGGTGAAAAGAACTCCGTCAGCT ATAATGAAAATGCTTTCCTTGTTACCTGGAAGTCCATGTTATACCTGCTCCACAAGCCAC CCAAGCATTTTGATGCACTTGTGCAAGAGCACTTTGGTAACCGATGGAAAAACATTTTGT TAGCTTGTAAGGCGTACATGGATGGCGCACCAGTTGGTTCAGCATTCCAACCCAAGAACC AGGACAAAGAACCAATAAAAGGAAGCTCTACTGGATTCAAAATTATGCTTGGCAAGCTTT ACCCTAAACTCGTGGAGGCATTTTCCAACAAAGGTATCGATTGCAGTCAGTTGTCCGATT AAGTGTAAAGCTATGCACCTCTGTAATAAAAACTTTTATCAATATGTCTACAATTTCAGT ATTTGAACTGGCCCTGATGTGGCTGTTGCTATGTTAATTTTGAAGTGTGCAGATGTGCGT TTGTGTGTGAGAGAGGGGTGCGGTGACTATTTGAACCATAATTGTGTACATATGCATTGC AATTGTAACATATTATATAAGCTATGAATAAATGGTTGAACCTTGTGAGTGATGTTTACT ATGTTCTACAGTTGTTTTGAACTTGTTGTCTCAACATGTTTTATCTCCATTTTGTGTTGG CTTTTTGAAAAATGCATTGTTT