Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc02g071180.3.1
CDS Infomation	RNA polymerase II degradation factor-like protein (DUF1296) (AHRD V3.3 *** AT1G29370.1)
Sequence	ATGAGTAGCAGAAACAATGGTGGAGTTGGGGTACAATCGATACCCGCAGGGTCAAGAAAG ATGGTACAAAGCTTAAAGGAGATAGTTAACTGTCCTGAACCTGAGATCTATGCTATGCTC AAAGAATGTAATATGGACCCCAATGAAGCTGTCAATAGGCTTCTTACTCAAGATACTTTT CATGAGGTGAAGAGCAAACGTGAAAAGAGAAAAGAGAGTAAGGATACGACTGAATCTAGG CCACGTGGTGCAATTAGCAACTCAGGCCGTGGTAGCAGGGGAGGTGCAGAACGATATGTT GGGCGCGGTGGGTCAGCCGAGTCTACCAAGCTTATTCCTGGATACAGAAAAGATAATGGA TCAAAGACGAGTAACCTGACTTCTACTCTAGGAGTTTCCGGAATAAGCAGGAGGGCCACA ACAATCAGTGATATTGCTGCAAATGAAAGTAAAAAGTCAGCACCTGCAGCAGTTGATGGT GTTTCATCAGTCTCACAGCATGAGACTTCTTCTGGATATCAACCTACTTGGGGTGGGGTG CCCGGTCAAGTTTCCATGGCTGATATTGTGAAGATGGGTAGGCCACAGAGCAAAGTGCCA AGTGCACCTAGTGTATCTCACCACAATGTCAATGCCGAGCAAAACCATATTCAGGGGCTC CCTTCTGGTGCATCACATCAAAATACTCAGTGGTCTGATGATCATACTACCAAAATTTCT GAGGTACACCGAGAGCCACAACATCTTTCAACTGATGAGGAATGGCCTCTAATTGAGCCG CCATCAGTTGCTAGTCAGACATCTATCTCAGAGCCTCCTGCTGATTCGGAGCTGCATCCT GATCCAACTAACATGTCATATGACAGAATTAATCATCAAAATGAGATTGATGAAGTTCAG GGGACAGATAACTGCACGATTGAAAATCTTGGTAGTCCTTCAAGCAGAAGGTTGCAGGAG GATAATGCTGGAGGTGCATCTATTTATGAGAATGACCTCTACGGATATCAGAACCAGAAT CATACCTTTGACCATCAACAAGCTGAGGATGTTAACAACTCTGTTTCATCAGTTTCTGCA AACTTGCAACAGTTAAATGTACAAGATGATGGAGGGGTGCCACCTGAGGGAGATGGTCCT TCTGTTGTAATACCAGACCATCTTCAAGTTCAAACTGCAGACTGCTCACACCTGAGCTTT GGTAGCTTTGGCTCTGGTATTGGTGGCTCCTTTTCTGGGCCTTTGGCATCTGCTCCAGTG ACTAGTACTTTGGAAGATGCACCTAAGGAAGTGGATGGTTCATCAGTTGGGCACTTGGGA TCCAGAGCTTCAGAATACTATGGTGATGAGTCTCTCAGACATGCATCTGAGAGTAACTTA TACCATAGAACTAATGCAAGTTCTGTAAATTACGATTCACCTGCTTCACAACCAGAACCT TTGAAATCAGAAACAAATGAACAAGGAAATCAATATTCGTATCCCTCTTCTGCTGCTGGC TACACATATGAAAGTGCACAACAATTAACTGCAGCATTTAGTCAGCCACAGACAAGTTCC CAGATGCAAAATCTCACTCCTTTCTCTAATGTAATGGCTTTCACAAATTCATTGCCTAGC ACCTTGTTGGCTGCTAATGCTCATGCTGGTCGTGAAACTGATCTTTCATACTTACCTTTT TCTGCAACACAAGCAATGGCTATGAAATATGGCAGCTCTGTTTCTTCAATTGGTGGTTCA ACAATTTCCATGCCTGAGTCTTTGAAGGGTGCTGGTTTTCCATCAGCACAGCCTACACAG CAGCCACTTTCTGGAACTAGTGTCACCACTGGACCTACTGTGCCGCAACATCTTGCTGTG CATCCATATAACCAACCACCTCTGGGACCATTTGCTAACATGATAGGTTATCCCTTTTTG CCTCAGAGTTATACATATATGCCATCTGCATTCCAGCAACCATTTGCTGGTAACAGTAAT TATCATCAGTCACTGGCGGCGGTGCTTCCTCAATATAAGAACAGTGTGTCAGTCAGCAGC TTACCTCAGCCAGCCAGTGTTGCTTCTGCGTATGGTGGTTTTGGAAATACAGCAAGTATC CCTGGTAACTTCCCAATGAATCCCCCTGCTGCTCCCTCTGGTACTAACTTGAGTTACGAT GATGTGTTGAGCTCTCAGTACAAGGATACCAATCATTTAATGTCTCTTCAGCAGAGCGAG AACTCAGCTATGTGGCATGGACCCGGTTCAAGGACAATGTCAGCTGTTCCTGCTAACACA TATTATGGTTTTCAAGGTCAAAACCAGCAAAGTAGTGGATTTAGGCAAGCTCAACAGCCG CTGCAAAATCATGGATCCTTGGGGTACCCAAATTTCTACCATTCTCAGGCGGGGATCTCA TTAGAACATCAACAACAAAATCCGAGGGATGGGTCATTGGGTGGTGGATCTCAAGGCCAG CCAAAGCAGTTTCAACAGCTATGGCAAAGTGGCGGCTACTAA

Peptide Sequence

PEP ID	Solyc02g071180.3.1
PEP Infomation	RNA polymerase II degradation factor-like protein (DUF1296) (AHRD V3.3 *** AT1G29370.1)
Sequence	MSSRNNGGVGVQSIPAGSRKMVQSLKEIVNCPEPEIYAMLKECNMDPNEAVNRLLTQDTF HEVKSKREKRKESKDTTESRPRGAISNSGRGSRGGAERYVGRGGSAESTKLIPGYRKDNG SKTSNLTSTLGVSGISRRATTISDIAANESKKSAPAAVDGVSSVSQHETSSGYQPTWGGV PGQVSMADIVKMGRPQSKVPSAPSVSHHNVNAEQNHIQGLPSGASHQNTQWSDDHTTKIS EVHREPQHLSTDEEWPLIEPPSVASQTSISEPPADSELHPDPTNMSYDRINHQNEIDEVQ GTDNCTIENLGSPSSRRLQEDNAGGASIYENDLYGYQNQNHTFDHQQAEDVNNSVSSVSA NLQQLNVQDDGGVPPEGDGPSVVIPDHLQVQTADCSHLSFGSFGSGIGGSFSGPLASAPV TSTLEDAPKEVDGSSVGHLGSRASEYYGDESLRHASESNLYHRTNASSVNYDSPASQPEP LKSETNEQGNQYSYPSSAAGYTYESAQQLTAAFSQPQTSSQMQNLTPFSNVMAFTNSLPS TLLAANAHAGRETDLSYLPFSATQAMAMKYGSSVSSIGGSTISMPESLKGAGFPSAQPTQ QPLSGTSVTTGPTVPQHLAVHPYNQPPLGPFANMIGYPFLPQSYTYMPSAFQQPFAGNSN YHQSLAAVLPQYKNSVSVSSLPQPASVASAYGGFGNTASIPGNFPMNPPAAPSGTNLSYD DVLSSQYKDTNHLMSLQQSENSAMWHGPGSRTMSAVPANTYYGFQGQNQQSSGFRQAQQP LQNHGSLGYPNFYHSQAGISLEHQQQNPRDGSLGGGSQGQPKQFQQLWQSGGY*

Transcript Sequence

Transcript ID	Solyc02g071180.3.1
Transcript Infomation	RNA polymerase II degradation factor-like protein (DUF1296) (AHRD V3.3 *** AT1G29370.1)
Sequence	CAAAAGCAAAAACCCCTTCATTCTGTGCGTTATTTTTCATAATAAAACTGAGATAAATAT ACAGAGTTGAGGAGACCCAAAAAACCCTAAACTATAACAGATCTGAAACAAGAAAATATT TTGTGGGTCTTTCTTGTTTTTTTCCTCTCTTTTTTTTTAGAGAAAAAGAGTTGTCTTCTT CAAAGATGAGTAGCAGAAACAATGGTGGAGTTGGGGTACAATCGATACCCGCAGGGTCAA GAAAGATGGTACAAAGCTTAAAGGAGATAGTTAACTGTCCTGAACCTGAGATCTATGCTA TGCTCAAAGAATGTAATATGGACCCCAATGAAGCTGTCAATAGGCTTCTTACTCAAGATA CTTTTCATGAGGTGAAGAGCAAACGTGAAAAGAGAAAAGAGAGTAAGGATACGACTGAAT CTAGGCCACGTGGTGCAATTAGCAACTCAGGCCGTGGTAGCAGGGGAGGTGCAGAACGAT ATGTTGGGCGCGGTGGGTCAGCCGAGTCTACCAAGCTTATTCCTGGATACAGAAAAGATA ATGGATCAAAGACGAGTAACCTGACTTCTACTCTAGGAGTTTCCGGAATAAGCAGGAGGG CCACAACAATCAGTGATATTGCTGCAAATGAAAGTAAAAAGTCAGCACCTGCAGCAGTTG ATGGTGTTTCATCAGTCTCACAGCATGAGACTTCTTCTGGATATCAACCTACTTGGGGTG GGGTGCCCGGTCAAGTTTCCATGGCTGATATTGTGAAGATGGGTAGGCCACAGAGCAAAG TGCCAAGTGCACCTAGTGTATCTCACCACAATGTCAATGCCGAGCAAAACCATATTCAGG GGCTCCCTTCTGGTGCATCACATCAAAATACTCAGTGGTCTGATGATCATACTACCAAAA TTTCTGAGGTACACCGAGAGCCACAACATCTTTCAACTGATGAGGAATGGCCTCTAATTG AGCCGCCATCAGTTGCTAGTCAGACATCTATCTCAGAGCCTCCTGCTGATTCGGAGCTGC ATCCTGATCCAACTAACATGTCATATGACAGAATTAATCATCAAAATGAGATTGATGAAG TTCAGGGGACAGATAACTGCACGATTGAAAATCTTGGTAGTCCTTCAAGCAGAAGGTTGC AGGAGGATAATGCTGGAGGTGCATCTATTTATGAGAATGACCTCTACGGATATCAGAACC AGAATCATACCTTTGACCATCAACAAGCTGAGGATGTTAACAACTCTGTTTCATCAGTTT CTGCAAACTTGCAACAGTTAAATGTACAAGATGATGGAGGGGTGCCACCTGAGGGAGATG GTCCTTCTGTTGTAATACCAGACCATCTTCAAGTTCAAACTGCAGACTGCTCACACCTGA GCTTTGGTAGCTTTGGCTCTGGTATTGGTGGCTCCTTTTCTGGGCCTTTGGCATCTGCTC CAGTGACTAGTACTTTGGAAGATGCACCTAAGGAAGTGGATGGTTCATCAGTTGGGCACT TGGGATCCAGAGCTTCAGAATACTATGGTGATGAGTCTCTCAGACATGCATCTGAGAGTA ACTTATACCATAGAACTAATGCAAGTTCTGTAAATTACGATTCACCTGCTTCACAACCAG AACCTTTGAAATCAGAAACAAATGAACAAGGAAATCAATATTCGTATCCCTCTTCTGCTG CTGGCTACACATATGAAAGTGCACAACAATTAACTGCAGCATTTAGTCAGCCACAGACAA GTTCCCAGATGCAAAATCTCACTCCTTTCTCTAATGTAATGGCTTTCACAAATTCATTGC CTAGCACCTTGTTGGCTGCTAATGCTCATGCTGGTCGTGAAACTGATCTTTCATACTTAC CTTTTTCTGCAACACAAGCAATGGCTATGAAATATGGCAGCTCTGTTTCTTCAATTGGTG GTTCAACAATTTCCATGCCTGAGTCTTTGAAGGGTGCTGGTTTTCCATCAGCACAGCCTA CACAGCAGCCACTTTCTGGAACTAGTGTCACCACTGGACCTACTGTGCCGCAACATCTTG CTGTGCATCCATATAACCAACCACCTCTGGGACCATTTGCTAACATGATAGGTTATCCCT TTTTGCCTCAGAGTTATACATATATGCCATCTGCATTCCAGCAACCATTTGCTGGTAACA GTAATTATCATCAGTCACTGGCGGCGGTGCTTCCTCAATATAAGAACAGTGTGTCAGTCA GCAGCTTACCTCAGCCAGCCAGTGTTGCTTCTGCGTATGGTGGTTTTGGAAATACAGCAA GTATCCCTGGTAACTTCCCAATGAATCCCCCTGCTGCTCCCTCTGGTACTAACTTGAGTT ACGATGATGTGTTGAGCTCTCAGTACAAGGATACCAATCATTTAATGTCTCTTCAGCAGA GCGAGAACTCAGCTATGTGGCATGGACCCGGTTCAAGGACAATGTCAGCTGTTCCTGCTA ACACATATTATGGTTTTCAAGGTCAAAACCAGCAAAGTAGTGGATTTAGGCAAGCTCAAC AGCCGCTGCAAAATCATGGATCCTTGGGGTACCCAAATTTCTACCATTCTCAGGCGGGGA TCTCATTAGAACATCAACAACAAAATCCGAGGGATGGGTCATTGGGTGGTGGATCTCAAG GCCAGCCAAAGCAGTTTCAACAGCTATGGCAAAGTGGCGGCTACTAATCTCTTACTGCCT CCTTCTTTTTTGGAGTCTTGTAATGAGTGTGAAAGTGGCTATAGGGTGTTGCTTTGGAAG CAACTAGAATGCACAATCAATTGGATGCTTACCTGTGCCTCAAGGTTGTACTTTACATGT TTGTCATCAGTCAAATGTAACGTAGGATGTGAGCTAACGTCGTGCTAGTGGACTTGTCTT CTGTTTCATCAACTCTTTGTTACACAGTTAACCCCATGGTTTCTTTATTAATAGTGAGAA GTGTTCTGTCTCCACTGGAAATGCATTGC