Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g070090.1.1
CDS Infomation

FAD-binding Berberine family protein (AHRD V3.3 *** A0A061G7Z5_THECC)
Sequence

ATGATGAAAATTCCATTATTTCCCTCTTGTCTTATTATTTTTCTTGTTTTTGCTACTTCA
ATAAGTCCTTCACATGAACATCAATTATCATTTCTTGAATGTCTTGAAGCAAATTCAAAC
CCTACTTATCCAATTTCTTCATTAGTATTTTCTCCAAATAATTCTTCATTTCCATCTATT
TTGCAAGCTTACATAAGAAATTTAAGATTCAATGAGTCTACAACTAGGAAACCTCTCTTC
ATACTCACAGCTCAACATGAATCTCATATTCAAGCATCAATTGTTTGTGCAAAATCACAA
GGTGTGCAAATGAAAATTAGAAGTGGAGGGCATGACTACGAGGGTCTTTCTTATGTATCC
AACGTACCATTTTTCATCGTTGACATGTTCAATTTTCGATCGATAAATGTTAGTATTGAC
GATGAATCGGCTTGGGTTGAAGTAGGTGCAACCCTTGGCGAAGTTTACTATAGAATCGCG
GAAAAAAGCAACATTTATGGATTTCCCGCGGGAGTTTGCCCTACCGTCGGAGTTGGTGGA
CACTTTAGTGGGGCCGGTTATGGTAACATGATGAGGAAATACGGTTTAACGGTCGATAAT
ATCGACGATGCAAAATTAATTGATGTTAATGGACGAATCCTCGATCGTAAATCGATGGGG
GAGGATTTATTTTGGGCTATTACGGGTGGTGGTGGGGTGAGTTATGGAGTTGTATTGTCG
TATAAAATAAAGTTGGTACGAGTTCCACCAAAGGTGACCGTTTTTCGAGTCCCGAGATTT
TATGACCAAAATGCCCTTGACCTTGCTTACCTGTGGCAACGTCGCGCTAACACGTGGGAC
AATGACCTATTCATGAGAATGATCATTGACGTAGTCAATAGAACTACACGTACCTCGGAG
AAAACCATTAGGGTTTCCTTTTTTACTCTATATCTTGGAGACTCGAACAGACTCCTCTCA
CTTCTCAACCAGAGTTTCCCAGAGCTAGGGTTAGAACGAAAGGATTGCATCGAGATGTCT
TGGATCGAATCCGTGCTTTACTATACAAATTCCCCAATTACCCCTATTGATGCTTTGCTA
AGTAGGTCACCTCCCCTAACATACTTGAAAAGAAAATCAGACTACTTACAAAAACCAATG
TCAAAAGAAGGGTTAGAGTTCATATTCAAGAAAATGATAGAACTACAAACACCAACAAGT
TTGGTATTTAATCCTTATGGTGGAAGAATGAGTGAAATCTCACCTTTAGCTAAGCCATTC
CCACATAGAGATGGAAATATAGCAAAGATTCAATACTCAACCAATTGGAATGAAAAAGGA
GTTGAAGCTTCAAACCATTATCTCAACTTGACAAGAGTACTTTATAACTATATGACACCT
TTTGTGTCAAAATCACCAAGATTAGCATTCTTAAATTATAGGGATATTGATTTGGGAACT
ACACATAATGGGAAATTAAGTTATTTTGAAGGTAAAGTGTATGGGATAAAGTATTTCAAG
AAGGAAAATTTCAATAGGTTGGTGAAGATCAAGACTAAAGTTGATCCTCAAAATTTCTTT
AGGAATGAACAAAGCATACCAGTTTACCCTTCTTGGAGGAATTAA

Peptide Sequence

PEP ID

Solyc02g070090.1.1
PEP Infomation

FAD-binding Berberine family protein (AHRD V3.3 *** A0A061G7Z5_THECC)
Sequence

MMKIPLFPSCLIIFLVFATSISPSHEHQLSFLECLEANSNPTYPISSLVFSPNNSSFPSI
LQAYIRNLRFNESTTRKPLFILTAQHESHIQASIVCAKSQGVQMKIRSGGHDYEGLSYVS
NVPFFIVDMFNFRSINVSIDDESAWVEVGATLGEVYYRIAEKSNIYGFPAGVCPTVGVGG
HFSGAGYGNMMRKYGLTVDNIDDAKLIDVNGRILDRKSMGEDLFWAITGGGGVSYGVVLS
YKIKLVRVPPKVTVFRVPRFYDQNALDLAYLWQRRANTWDNDLFMRMIIDVVNRTTRTSE
KTIRVSFFTLYLGDSNRLLSLLNQSFPELGLERKDCIEMSWIESVLYYTNSPITPIDALL
SRSPPLTYLKRKSDYLQKPMSKEGLEFIFKKMIELQTPTSLVFNPYGGRMSEISPLAKPF
PHRDGNIAKIQYSTNWNEKGVEASNHYLNLTRVLYNYMTPFVSKSPRLAFLNYRDIDLGT
THNGKLSYFEGKVYGIKYFKKENFNRLVKIKTKVDPQNFFRNEQSIPVYPSWRN*

Transcript Sequence

Transcript ID

Solyc02g070090.1.1
Transcript Infomation

FAD-binding Berberine family protein (AHRD V3.3 *** A0A061G7Z5_THECC)
Sequence

ATGATGAAAATTCCATTATTTCCCTCTTGTCTTATTATTTTTCTTGTTTTTGCTACTTCA
ATAAGTCCTTCACATGAACATCAATTATCATTTCTTGAATGTCTTGAAGCAAATTCAAAC
CCTACTTATCCAATTTCTTCATTAGTATTTTCTCCAAATAATTCTTCATTTCCATCTATT
TTGCAAGCTTACATAAGAAATTTAAGATTCAATGAGTCTACAACTAGGAAACCTCTCTTC
ATACTCACAGCTCAACATGAATCTCATATTCAAGCATCAATTGTTTGTGCAAAATCACAA
GGTGTGCAAATGAAAATTAGAAGTGGAGGGCATGACTACGAGGGTCTTTCTTATGTATCC
AACGTACCATTTTTCATCGTTGACATGTTCAATTTTCGATCGATAAATGTTAGTATTGAC
GATGAATCGGCTTGGGTTGAAGTAGGTGCAACCCTTGGCGAAGTTTACTATAGAATCGCG
GAAAAAAGCAACATTTATGGATTTCCCGCGGGAGTTTGCCCTACCGTCGGAGTTGGTGGA
CACTTTAGTGGGGCCGGTTATGGTAACATGATGAGGAAATACGGTTTAACGGTCGATAAT
ATCGACGATGCAAAATTAATTGATGTTAATGGACGAATCCTCGATCGTAAATCGATGGGG
GAGGATTTATTTTGGGCTATTACGGGTGGTGGTGGGGTGAGTTATGGAGTTGTATTGTCG
TATAAAATAAAGTTGGTACGAGTTCCACCAAAGGTGACCGTTTTTCGAGTCCCGAGATTT
TATGACCAAAATGCCCTTGACCTTGCTTACCTGTGGCAACGTCGCGCTAACACGTGGGAC
AATGACCTATTCATGAGAATGATCATTGACGTAGTCAATAGAACTACACGTACCTCGGAG
AAAACCATTAGGGTTTCCTTTTTTACTCTATATCTTGGAGACTCGAACAGACTCCTCTCA
CTTCTCAACCAGAGTTTCCCAGAGCTAGGGTTAGAACGAAAGGATTGCATCGAGATGTCT
TGGATCGAATCCGTGCTTTACTATACAAATTCCCCAATTACCCCTATTGATGCTTTGCTA
AGTAGGTCACCTCCCCTAACATACTTGAAAAGAAAATCAGACTACTTACAAAAACCAATG
TCAAAAGAAGGGTTAGAGTTCATATTCAAGAAAATGATAGAACTACAAACACCAACAAGT
TTGGTATTTAATCCTTATGGTGGAAGAATGAGTGAAATCTCACCTTTAGCTAAGCCATTC
CCACATAGAGATGGAAATATAGCAAAGATTCAATACTCAACCAATTGGAATGAAAAAGGA
GTTGAAGCTTCAAACCATTATCTCAACTTGACAAGAGTACTTTATAACTATATGACACCT
TTTGTGTCAAAATCACCAAGATTAGCATTCTTAAATTATAGGGATATTGATTTGGGAACT
ACACATAATGGGAAATTAAGTTATTTTGAAGGTAAAGTGTATGGGATAAAGTATTTCAAG
AAGGAAAATTTCAATAGGTTGGTGAAGATCAAGACTAAAGTTGATCCTCAAAATTTCTTT
AGGAATGAACAAAGCATACCAGTTTACCCTTCTTGGAGGAATTAA