Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g068890.3.1
CDS Infomation

Pentatricopeptide repeat superfamily protein (AHRD V3.3 *** A0A061GDR6_THECC)
Sequence

ATGATTTCCTTTGCATTTCATCGTCTCTACAGACTTCACCATTTTACAGCTTCTACTACA
CTCCTCAATGGCCTCCTTTTCTCCTATCCTCACCATTTCTTCAACTTTAATAGCAACCCC
TTTTGGCGCTATACCCAATTTCATTCTTTTACAACAAACCCATTGTCTTCTGATTTTGAT
TCAGTTGTCAGAAGGGTCTGTTCTTTAGTATCTGAATCATACTGTAAAGTTCAAGAAAAT
ACCCATTTCAAATCTAGACATCCCAAGTTGAAATTGCCGATTGATTCTGAGTGTTTGACT
CAAGAACAGGCTATAACTGTTGTTGCTTCTCTTGCAGATGAGGGAGGGTCCATGCTGGCA
TTGAGTTTTTTTTATTGGGCAATTGGGTATGTGAAATTCAGGCATTTTATGAGGCTTTAT
ATTGTTTTAGCTATTTATTTGATTAAAAATGGCAACTTTGAGAGAACCCATGAAGTGATG
CATTGTATGTTGAGGAATTTTTGTGAAGTTGGTATGTTAAAGGAGGCTGTAGATATGGTT
TTTGAGATGCAAAATCAAGGTTTGGTTTTGAATGCTGGGAGTTTGAATTCTGTTGTTAGT
GTTGTTACTGAGATGGGACATGTTGAGATGGCAGAGAAGGTGTTTGGTGAAATGTGTGAC
AGAGGGGTCTGTCCTGATTCATTTTGTTTCGAGTCTATGGTTGTTGCTTATTGTAGAATG
GGAAGAGTTGTAGAGGCTGATAGGTGGCTGAGTGCAATGCTCGAAAGGGGGTTTCTTGTT
GATAATGCGACTTGCACTTTAATATTGAGTGTTTTCTGTGAAAAGGGGTCTATTAATAGA
GTGTTGTGGATTTTTAATAAACTGATTGAATTGGGGTTGGCTCCAAATGTTATCAATTAT
ACGTGTTTGATAAATGGATTGTGTAAGAAAGGCATTATTAAGCATGCATTCGAGTTGTTA
GAGGAAATGGTTAGAAAAGGTTTGAAACCAAATGTTTTCACTCATACTGCATTGATTGAT
GGTCTTTGTAAGAAAGGCTGGATGGATAAGGCTTTTAGACTTTTCCTAAAACTTGTGAAG
AGTGACAATTACAAGCCTAATGTGCATACATATACAGCCATGATAGCTGGATACTGCAAA
CAGGAAAAATTGAATCGTGCAGAAATGCTACTGAGCAGAATGCAAGAACAAGAGTTGGTC
CCTAATGCCAACACCTACACTGCTCTCATTGATGGGTACTGTAAAGTTGGAAACTTTGAT
GTTGCTTATAAATTATTGCGTGTGATGGATGAAAAAGGCTTGGCACCAAGCATTTTTACG
TATAACGCAGTCATTGATGGCCTGTGTAAAAAGGGTAGGGTTCAGGAGGCTTATCAGATG
CTGAAGAAAGGTATGCAAATTGGAATTTCGCCAGATTTAGTGACTTACACCATTCTAATG
TCTCAGAGCTGCAAACTAGGAGATAATGGACAAGCCTTTGCTCTTTTCAGTAAGATGGTT
AAAGCTGGTATTGGCCCTGATATGCATACATACACCACATTAATTGCTGCCTTGTGTAGG
CAAAAGAAAATGAAAGACAGTGAAAAGCTCTTTGATGATGCTGTAATTTTAGGTTTGATA
CCTACCAAAGAGACTTGTACTTCCATGATATGTGGATATTGTAGAGATAAAAATGTGGCC
ATGGCCAAGAAGTACTTCCAGAGGATGGGAGAATATGGTTGTGTACCTGATAGCCTCACT
TATGGTGCTTTGATTAGTGGGCTTTGTAAGGAGTCAAAGTTGGATGAGGCTAGAGATCTT
TACAATTCAATGGTTGATAAAGGGATTCCCCCATGTGAAGTTACACGGCTGACTGTAGCT
TATGAGTATTGCAAGAACAATGAACCAACCATCACAATGGGCCTCTTAGATAAATTAGAA
AAAAAACTTTGGGTTCGAACCGTATCTACCTTAGTCAGGAAGCTTTGCAGTGAAAAGAAT
GTGAATGTAGCTGCTCTGTTTTTCCATAAACTGCTAGACAAACAGCAGAGTGTGGATCGA
GTAACTCTTGCAGCGTTTATGTCGGCGTGCTATGAAAGCAATAAATATGACCTTGTCTCC
AGTATGAACGAGAGGATAACAAAAGATTTTGGAGAATCTACGGCAGAGTGA

Peptide Sequence

PEP ID

Solyc02g068890.3.1
PEP Infomation

Pentatricopeptide repeat superfamily protein (AHRD V3.3 *** A0A061GDR6_THECC)
Sequence

MISFAFHRLYRLHHFTASTTLLNGLLFSYPHHFFNFNSNPFWRYTQFHSFTTNPLSSDFD
SVVRRVCSLVSESYCKVQENTHFKSRHPKLKLPIDSECLTQEQAITVVASLADEGGSMLA
LSFFYWAIGYVKFRHFMRLYIVLAIYLIKNGNFERTHEVMHCMLRNFCEVGMLKEAVDMV
FEMQNQGLVLNAGSLNSVVSVVTEMGHVEMAEKVFGEMCDRGVCPDSFCFESMVVAYCRM
GRVVEADRWLSAMLERGFLVDNATCTLILSVFCEKGSINRVLWIFNKLIELGLAPNVINY
TCLINGLCKKGIIKHAFELLEEMVRKGLKPNVFTHTALIDGLCKKGWMDKAFRLFLKLVK
SDNYKPNVHTYTAMIAGYCKQEKLNRAEMLLSRMQEQELVPNANTYTALIDGYCKVGNFD
VAYKLLRVMDEKGLAPSIFTYNAVIDGLCKKGRVQEAYQMLKKGMQIGISPDLVTYTILM
SQSCKLGDNGQAFALFSKMVKAGIGPDMHTYTTLIAALCRQKKMKDSEKLFDDAVILGLI
PTKETCTSMICGYCRDKNVAMAKKYFQRMGEYGCVPDSLTYGALISGLCKESKLDEARDL
YNSMVDKGIPPCEVTRLTVAYEYCKNNEPTITMGLLDKLEKKLWVRTVSTLVRKLCSEKN
VNVAALFFHKLLDKQQSVDRVTLAAFMSACYESNKYDLVSSMNERITKDFGESTAE*

Transcript Sequence

Transcript ID

Solyc02g068890.3.1
Transcript Infomation

Pentatricopeptide repeat superfamily protein (AHRD V3.3 *** A0A061GDR6_THECC)
Sequence

AAAAGTTATAAATCCAAACAGTGGTTATGTATCGTGCCCTGTTGTGTCCTCGATTTTGGG
CGCATGCTCAGCGCGAAGTGAACCTTGCAACATCTAATTTGTGCTATTGAAATTTGAAAG
CAAAGCATTTTTCATGATTTCCTTTGCATTTCATCGTCTCTACAGACTTCACCATTTTAC
AGCTTCTACTACACTCCTCAATGGCCTCCTTTTCTCCTATCCTCACCATTTCTTCAACTT
TAATAGCAACCCCTTTTGGCGCTATACCCAATTTCATTCTTTTACAACAAACCCATTGTC
TTCTGATTTTGATTCAGTTGTCAGAAGGGTCTGTTCTTTAGTATCTGAATCATACTGTAA
AGTTCAAGAAAATACCCATTTCAAATCTAGACATCCCAAGTTGAAATTGCCGATTGATTC
TGAGTGTTTGACTCAAGAACAGGCTATAACTGTTGTTGCTTCTCTTGCAGATGAGGGAGG
GTCCATGCTGGCATTGAGTTTTTTTTATTGGGCAATTGGGTATGTGAAATTCAGGCATTT
TATGAGGCTTTATATTGTTTTAGCTATTTATTTGATTAAAAATGGCAACTTTGAGAGAAC
CCATGAAGTGATGCATTGTATGTTGAGGAATTTTTGTGAAGTTGGTATGTTAAAGGAGGC
TGTAGATATGGTTTTTGAGATGCAAAATCAAGGTTTGGTTTTGAATGCTGGGAGTTTGAA
TTCTGTTGTTAGTGTTGTTACTGAGATGGGACATGTTGAGATGGCAGAGAAGGTGTTTGG
TGAAATGTGTGACAGAGGGGTCTGTCCTGATTCATTTTGTTTCGAGTCTATGGTTGTTGC
TTATTGTAGAATGGGAAGAGTTGTAGAGGCTGATAGGTGGCTGAGTGCAATGCTCGAAAG
GGGGTTTCTTGTTGATAATGCGACTTGCACTTTAATATTGAGTGTTTTCTGTGAAAAGGG
GTCTATTAATAGAGTGTTGTGGATTTTTAATAAACTGATTGAATTGGGGTTGGCTCCAAA
TGTTATCAATTATACGTGTTTGATAAATGGATTGTGTAAGAAAGGCATTATTAAGCATGC
ATTCGAGTTGTTAGAGGAAATGGTTAGAAAAGGTTTGAAACCAAATGTTTTCACTCATAC
TGCATTGATTGATGGTCTTTGTAAGAAAGGCTGGATGGATAAGGCTTTTAGACTTTTCCT
AAAACTTGTGAAGAGTGACAATTACAAGCCTAATGTGCATACATATACAGCCATGATAGC
TGGATACTGCAAACAGGAAAAATTGAATCGTGCAGAAATGCTACTGAGCAGAATGCAAGA
ACAAGAGTTGGTCCCTAATGCCAACACCTACACTGCTCTCATTGATGGGTACTGTAAAGT
TGGAAACTTTGATGTTGCTTATAAATTATTGCGTGTGATGGATGAAAAAGGCTTGGCACC
AAGCATTTTTACGTATAACGCAGTCATTGATGGCCTGTGTAAAAAGGGTAGGGTTCAGGA
GGCTTATCAGATGCTGAAGAAAGGTATGCAAATTGGAATTTCGCCAGATTTAGTGACTTA
CACCATTCTAATGTCTCAGAGCTGCAAACTAGGAGATAATGGACAAGCCTTTGCTCTTTT
CAGTAAGATGGTTAAAGCTGGTATTGGCCCTGATATGCATACATACACCACATTAATTGC
TGCCTTGTGTAGGCAAAAGAAAATGAAAGACAGTGAAAAGCTCTTTGATGATGCTGTAAT
TTTAGGTTTGATACCTACCAAAGAGACTTGTACTTCCATGATATGTGGATATTGTAGAGA
TAAAAATGTGGCCATGGCCAAGAAGTACTTCCAGAGGATGGGAGAATATGGTTGTGTACC
TGATAGCCTCACTTATGGTGCTTTGATTAGTGGGCTTTGTAAGGAGTCAAAGTTGGATGA
GGCTAGAGATCTTTACAATTCAATGGTTGATAAAGGGATTCCCCCATGTGAAGTTACACG
GCTGACTGTAGCTTATGAGTATTGCAAGAACAATGAACCAACCATCACAATGGGCCTCTT
AGATAAATTAGAAAAAAAACTTTGGGTTCGAACCGTATCTACCTTAGTCAGGAAGCTTTG
CAGTGAAAAGAATGTGAATGTAGCTGCTCTGTTTTTCCATAAACTGCTAGACAAACAGCA
GAGTGTGGATCGAGTAACTCTTGCAGCGTTTATGTCGGCGTGCTATGAAAGCAATAAATA
TGACCTTGTCTCCAGTATGAACGAGAGGATAACAAAAGATTTTGGAGAATCTACGGCAGA
GTGA