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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g067630.3.1
CDS Infomation

Polygalacturonase 1 (AHRD V1 ***- O22311_SOLLC)%3B contains Interpro domain(s) IPR000408 Regulator of chromosome condensation%2C RCC1 IPR000743 Glycoside hydrolase%2C family 28
Sequence

ATGAGTCCCTTTGCTATTTTCTTCCTCTTGTTAATTAACTCATCATTAGCAGCAAATACA
AATATTTACAATGTCCAAAATTATGGAGCAAAATCCGATGGAAAAACTGATTCATCAAAA
GCCTTTTTGAATGCATGGGCAGCAGCCTGTGCTTCTAATAAACCTTCCACTATTAATGTG
CCAATTGGAAAATACTTAATTCACAATGCAAACTTCAATGGACAAACATGCAAGAGCAAA
GCTATTACCATGCACATTGATGGGACTCTCTTAGCTCCATCTGATTATAATGTGATTGGC
AATGAAGAAAATTGGATAAAATTTGAAAAAGTCAATGGCCTTTCCATCTATGGTGGTACC
TTTGATGGTCAAGCTGCTGCTCTTTGGGCTTGCAAGAACTCCAACAACAAGAATTGCCCT
GATGGAACTACGGCATTAACTTTTTACAACTCAAACAACATTATAATGAGCGGAGTAAAA
GTACAAAATAGTCAAAAGTTTCAAATATTGGTAGACGGATGTCATAACGTAAAGCTTCAA
GGAGTAAAGGTATCCGCTCCAGGAAATAGTCCCAACACAGATGGAATTCATGTAAAATCA
TCATCTGGAGTTAGTATTATGAAATCACAAATTGGTACTGGAGATGATTGTATCTCTATT
GGCCCTGGAACTTCAAACTTATGGATTGAAGGCATTGCTTGTGGCCCTGGCCATGGAATA
AGCATTGGAAGCTTAGGCTGGAAACAACAAGAGTTAGGAGTCCAAAATGTGACAGTTAAG
ACTGTGACTTTCAGTGGAACAACAAATGGTGTGAGAGTTAAAACTTGGGCAAGGCCTAGC
AATGGCTTTGTTAGAAATGTTCTGTTTCAACATATTGTTATGGTTAATGTTAAAAACCCA
ATCATCATAGATCAAAATTATTGCCCTAATCATCAAAGTTGTCCTCATAAGGGCTCGGGT
ATAAAGATAAGTGATGTGACATATCAAGATATACATGGAACATCGGCTACAGAAGTTGCA
GTGAAACTTGATTGTAGCAAAAGTAATCCATGTAGCGGCATAACACTTGAAGATGTGAAT
CTTAGTTATCAAAATCAGCAGACTGAAGCTTCATGTGTTAATGCCAGAGGAAGAGTTTCT
GGTTTACAAAAACCTACCAATTGCCTATTAAAAAGTTAG

Peptide Sequence

PEP ID

Solyc02g067630.3.1
PEP Infomation

Polygalacturonase 1 (AHRD V1 ***- O22311_SOLLC)%3B contains Interpro domain(s) IPR000408 Regulator of chromosome condensation%2C RCC1 IPR000743 Glycoside hydrolase%2C family 28
Sequence

MSPFAIFFLLLINSSLAANTNIYNVQNYGAKSDGKTDSSKAFLNAWAAACASNKPSTINV
PIGKYLIHNANFNGQTCKSKAITMHIDGTLLAPSDYNVIGNEENWIKFEKVNGLSIYGGT
FDGQAAALWACKNSNNKNCPDGTTALTFYNSNNIIMSGVKVQNSQKFQILVDGCHNVKLQ
GVKVSAPGNSPNTDGIHVKSSSGVSIMKSQIGTGDDCISIGPGTSNLWIEGIACGPGHGI
SIGSLGWKQQELGVQNVTVKTVTFSGTTNGVRVKTWARPSNGFVRNVLFQHIVMVNVKNP
IIIDQNYCPNHQSCPHKGSGIKISDVTYQDIHGTSATEVAVKLDCSKSNPCSGITLEDVN
LSYQNQQTEASCVNARGRVSGLQKPTNCLLKS*

Transcript Sequence

Transcript ID

Solyc02g067630.3.1
Transcript Infomation

Polygalacturonase 1 (AHRD V1 ***- O22311_SOLLC)%3B contains Interpro domain(s) IPR000408 Regulator of chromosome condensation%2C RCC1 IPR000743 Glycoside hydrolase%2C family 28
Sequence

ATGAGTCCCTTTGCTATTTTCTTCCTCTTGTTAATTAACTCATCATTAGCAGCAAATACA
AATATTTACAATGTCCAAAATTATGGAGCAAAATCCGATGGAAAAACTGATTCATCAAAA
GCCTTTTTGAATGCATGGGCAGCAGCCTGTGCTTCTAATAAACCTTCCACTATTAATGTG
CCAATTGGAAAATACTTAATTCACAATGCAAACTTCAATGGACAAACATGCAAGAGCAAA
GCTATTACCATGCACATTGATGGGACTCTCTTAGCTCCATCTGATTATAATGTGATTGGC
AATGAAGAAAATTGGATAAAATTTGAAAAAGTCAATGGCCTTTCCATCTATGGTGGTACC
TTTGATGGTCAAGCTGCTGCTCTTTGGGCTTGCAAGAACTCCAACAACAAGAATTGCCCT
GATGGAACTACGGCATTAACTTTTTACAACTCAAACAACATTATAATGAGCGGAGTAAAA
GTACAAAATAGTCAAAAGTTTCAAATATTGGTAGACGGATGTCATAACGTAAAGCTTCAA
GGAGTAAAGGTATCCGCTCCAGGAAATAGTCCCAACACAGATGGAATTCATGTAAAATCA
TCATCTGGAGTTAGTATTATGAAATCACAAATTGGTACTGGAGATGATTGTATCTCTATT
GGCCCTGGAACTTCAAACTTATGGATTGAAGGCATTGCTTGTGGCCCTGGCCATGGAATA
AGCATTGGAAGCTTAGGCTGGAAACAACAAGAGTTAGGAGTCCAAAATGTGACAGTTAAG
ACTGTGACTTTCAGTGGAACAACAAATGGTGTGAGAGTTAAAACTTGGGCAAGGCCTAGC
AATGGCTTTGTTAGAAATGTTCTGTTTCAACATATTGTTATGGTTAATGTTAAAAACCCA
ATCATCATAGATCAAAATTATTGCCCTAATCATCAAAGTTGTCCTCATAAGGGCTCGGGT
ATAAAGATAAGTGATGTGACATATCAAGATATACATGGAACATCGGCTACAGAAGTTGCA
GTGAAACTTGATTGTAGCAAAAGTAATCCATGTAGCGGCATAACACTTGAAGATGTGAAT
CTTAGTTATCAAAATCAGCAGACTGAAGCTTCATGTGTTAATGCCAGAGGAAGAGTTTCT
GGTTTACAAAAACCTACCAATTGCCTATTAAAAAGTTAGATAAATTAAATTTGTGTATAC
TATCACAAGAATGGAATTATTGAAGTTGTGATTATATTATAAAGAATATTTGATTGTAAT
GTTAAAAATGCAATATGTACCTCATGTTTCAATTAATGTTAAATGAATATCAAATTCATA
TATTTATGAAAAAGCTTACTTAATTTTCCAGATCAGAGTTAAGAAAATGGACAAATTGAT
GAAAGACGATGAGTAGAAGAGTATGATTTTTGAGTTTGAAATGTTTGAGTGTTGTTCTTC
TTCAAAATTATTCAGTGAAGCTAAATCCTGAGTTTGAGCTCATTTGAAGTTGGATTGATA
TAATTTCGTTTGGGAACAAGGTTGGAACTCGCTTAAGATTGAGCTCGAAAACTTGAATTT
ACGATAAGAAATAAAAGATTTTGCTATATAACAATGATATAATTGTTGTTACATTACATT
ATATTTAGTT