Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g065650.1.1
CDS Infomation

LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3 *-* AT3G02340.2)
Sequence

ATGGCGGAAGTTTCTGGAATCTACCGTTTCCACCTCCCGTCTACCATCTATGCTACCGTC
GTTGACGATGATGATGAAGAGTATCCACATCCGTTTACTTTTGATTTCGACTCCCTTTCT
CCTCCTAATCACACCCTTTTTATCCACTCTCATGATTTCAACTATAGCCCAAATTCGGAA
CCCGAACCCGGTTCCCTAGATTCAGATTCAGGTTCGGATCACTCGGGTTTGCTTGCGGAT
CCGGATTCCTTTGTTGTTGATGATGACCAAATGAATTTTGTTACTGATCTGTTTGTGACA
CCTGATGGAAACGTTTCAGAAGATTCGGGTTTTGATGATGGGAATAGGGTTATTCTGGAG
GATGTGTATGGTGATTTTGGATCTGATTATGATGGGGTTCTTCTGCCCTCAGATACCAAC
GGGGTTGATACGGGTGATGGGATTCGGGTTGTGGGTGTTGTTGGGTCGGACTCTGATTCG
CAAGAAGTGGAGCTGAATGTTGGGGAGATTGATCAGGCCAATGATTTTTGGAGTTGTCTT
CGGATTGATGATCAGAGGGATGTGAATGATGAGTTTGAGTGGGAAGAAGTCAATGAAAGG
GGTGAAGATAGAGACTATTTGAGTTCTGTAATTGATGGAATTGAAGAAATATCAGTTTCT
TCAGATATTTCATCTTCTGAAGGAGGGAACTCAAATTCACATTCAGTTGATGAACCTGTG
AGGAATCTAGAGTGGGAAGTTCTTTTGGCCGTTAATAATATCGAAAGAAGCCTCGAACTT
GATGGAAATGATGATGGGATTGCTCATGTAAACGAAACTGATCACGATGCCTTGTTTGGG
CAATTTCTGGAGAGTGAAGGGAATTTGAAGGGTAGTCCACCAGCAGCTAAATCTGTTATT
GAAAATCTTCCATTGGTGACTTTGAAGGACGAAGAGAACAAGATAGCCTGTGCTGTTTGT
AAAGATGAGATTTTGGTTGTCGAGAAGGTGACTGAGCTTCCTTGTTCCCATTATTACCAT
TGGGAATGTATTATACCATGGCTAAACATACGTAATACATGCCCTGTTTGTCGTCATGAG
TTACCCACGGATGATACTGATTATGAAAGGAGAAAAATTGGAAGGCGTCCCGGTGCAGGA
GCTCAACTCAGTAGTGACTTTCAGGTTAGATACAATTTTGAAATTGTCCCCTGA

Peptide Sequence

PEP ID

Solyc02g065650.1.1
PEP Infomation

LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3 *-* AT3G02340.2)
Sequence

MAEVSGIYRFHLPSTIYATVVDDDDEEYPHPFTFDFDSLSPPNHTLFIHSHDFNYSPNSE
PEPGSLDSDSGSDHSGLLADPDSFVVDDDQMNFVTDLFVTPDGNVSEDSGFDDGNRVILE
DVYGDFGSDYDGVLLPSDTNGVDTGDGIRVVGVVGSDSDSQEVELNVGEIDQANDFWSCL
RIDDQRDVNDEFEWEEVNERGEDRDYLSSVIDGIEEISVSSDISSSEGGNSNSHSVDEPV
RNLEWEVLLAVNNIERSLELDGNDDGIAHVNETDHDALFGQFLESEGNLKGSPPAAKSVI
ENLPLVTLKDEENKIACAVCKDEILVVEKVTELPCSHYYHWECIIPWLNIRNTCPVCRHE
LPTDDTDYERRKIGRRPGAGAQLSSDFQVRYNFEIVP*

Transcript Sequence

Transcript ID

Solyc02g065650.1.1
Transcript Infomation

LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3 *-* AT3G02340.2)
Sequence

ATGGCGGAAGTTTCTGGAATCTACCGTTTCCACCTCCCGTCTACCATCTATGCTACCGTC
GTTGACGATGATGATGAAGAGTATCCACATCCGTTTACTTTTGATTTCGACTCCCTTTCT
CCTCCTAATCACACCCTTTTTATCCACTCTCATGATTTCAACTATAGCCCAAATTCGGAA
CCCGAACCCGGTTCCCTAGATTCAGATTCAGGTTCGGATCACTCGGGTTTGCTTGCGGAT
CCGGATTCCTTTGTTGTTGATGATGACCAAATGAATTTTGTTACTGATCTGTTTGTGACA
CCTGATGGAAACGTTTCAGAAGATTCGGGTTTTGATGATGGGAATAGGGTTATTCTGGAG
GATGTGTATGGTGATTTTGGATCTGATTATGATGGGGTTCTTCTGCCCTCAGATACCAAC
GGGGTTGATACGGGTGATGGGATTCGGGTTGTGGGTGTTGTTGGGTCGGACTCTGATTCG
CAAGAAGTGGAGCTGAATGTTGGGGAGATTGATCAGGCCAATGATTTTTGGAGTTGTCTT
CGGATTGATGATCAGAGGGATGTGAATGATGAGTTTGAGTGGGAAGAAGTCAATGAAAGG
GGTGAAGATAGAGACTATTTGAGTTCTGTAATTGATGGAATTGAAGAAATATCAGTTTCT
TCAGATATTTCATCTTCTGAAGGAGGGAACTCAAATTCACATTCAGTTGATGAACCTGTG
AGGAATCTAGAGTGGGAAGTTCTTTTGGCCGTTAATAATATCGAAAGAAGCCTCGAACTT
GATGGAAATGATGATGGGATTGCTCATGTAAACGAAACTGATCACGATGCCTTGTTTGGG
CAATTTCTGGAGAGTGAAGGGAATTTGAAGGGTAGTCCACCAGCAGCTAAATCTGTTATT
GAAAATCTTCCATTGGTGACTTTGAAGGACGAAGAGAACAAGATAGCCTGTGCTGTTTGT
AAAGATGAGATTTTGGTTGTCGAGAAGGTGACTGAGCTTCCTTGTTCCCATTATTACCAT
TGGGAATGTATTATACCATGGCTAAACATACGTAATACATGCCCTGTTTGTCGTCATGAG
TTACCCACGGATGATACTGATTATGAAAGGAGAAAAATTGGAAGGCGTCCCGGTGCAGGA
GCTCAACTCAGTAGTGACTTTCAGGTTAGATACAATTTTGAAATTGTCCCCTGA