Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g065410.2.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103YH70_CYNCS)
Sequence

ATGTTTATTAGGAGAGAGGAGACAGGTGAATTTACATTACATTTTTATAATTTGTATTTA
TATAAAGCAAAAGAGAGACAGAAGACACAATGTGTGAGCCACTTTTGCGAGATTGGGGAG
AGTGACGAAAGTGTGTACTTTTTTTCTTATATTTGGGCAAACCACTTTTGCAAGGCTAAG
CACATGCTGTCGAAGCTACCCTCATTCGGTCTAACTCCAAACTCACAGTTTCTGCGTGCA
CTTGGACCTTCTGGAGATATACGACGTGCCCGTCAACTGTTTGATGAAATTCCCCACCCA
GATATACGATCATGGACGCTCTTGATCACCGCATACACAAAGAGTGGATTTCCAAAAGAA
GCATTGGAAGTCTATGATGAATTGCGGGCAAGGAAAGTTCATCCTGATCAATTGGCACTA
TTATCAGTAACCAGGGCCTGTGCTGCTTTGGGCAACTTGATAAAGGCAAAAGGTATTCAT
GAAGATGTAATTAGATATGGATATCGCGCTGATTTGCTCCTTGGAAATGCATTGATTGAT
ATGTATGGCAAGTGTAAATATGCTCAAGGTGCAAGAGAGGTTTTTGATAATTTAAGTGTT
AAAGATGTAATCTCTTGGACGTCGATGAGTTCGTGCTATGTTAATTGTAAACTTCCAAGT
GAGGCGTTAATAATGTTCCGTGAAATGGGGTTAGATGGGGTGAAGCCTAATCCTGTTACG
TTGTCTACTGTACTTCCTGCCTGCTCAGATTTGAAAAGTTTGGATTTAGGTAGAGAGATT
CACGGGTATATTGTGAGAAATGGAATACATGATAATGTGTATGTTAGCAGTGCTCTTGTG
GACATGTATGCTAGTTGTTCAAGAATCAAACAAGCAGAGATGATATTTAATAGTACGCGT
CAGTTTGACTATGTCTTATGCAATGTTATTATGTCAGCATATTTCTCAAATGGGGAATGT
GACAAAGCACTTTGCATCTTTGATCAGTTGCGAAAAGGAAGAACCAAACTGAATCATGAT
TCCTGGAATTCTGTTATTGGAGGATGTATGCAAAGTGGAAGAACAGATAAGGCACTTCAA
GTACTTCATGAAATGCAGCAGTCAGGTGTAAAACCAAATAAAATCACGATCACCAGTGTA
TTACCTACTTGTATAGATCTAGGAAGCATAAGAAGAGGGAAGGAGATTCATGGTTTTCTC
CTTCGACATATATTTTTGGAAGATGAGACAGTCTTCACTGCTTTGGTACTCATGTATGCT
AGATGTGGTGACCTAGAACTATCCAAAAGAGTCTTCTATATGATGCCAAAAAAAGATACT
ATTGCTTGGAACACAATGATCATTGGAAATTCAATGCATGGGAACGGAGAGGATGCCTTG
TTGCTTTTCCGTGAAATGGTAAGTTCAGGGGTGAAACCCAACTCTGTTACCTTTACTGGT
GTCTTATCGGGTTGCAGCCATTCACAGCTGGTAGACAAGGGCCTTATGATCTTTTACGCA
ATGAGTAAGGAACATGGAGTTGAACCTGATTCAGAACATTATTCATGCATGGTTGATGCT
CTAAGCCGTGCTGGTCGCCTAGAACAGGCATATGATTTCATCCAAAACATGCCCATGAAA
CCAAGTGCTGGTGCTTGGGGAGCATTGCTTGGTGCATGTAGAGTATATAAGAATGTGGAA
ATGGCACGAGTTGCTGGAAAACAACTGTTGGAGATTGAGCCAGAAAACGCTGGGAACTAT
GTTTTATTGTCCAATATCTATGAAGCTGCCAAATTACGAGACGAGGCCTCAGAAATTAGG
AAATTGATGAGAGAAAGAGGCATTATGAAAGTTCCTGGTTGTAGTTGGATTCAAGTGAAA
GACAAAGTGCATACTTTTGTTGTCGGTGACAAGAATAATGCGCAGACTGCGGACATTTAC
AGCTTTTTGACTGAAGTAGGTGAAAAGATGAGGTTAGCTGGGTATTTACCCTGTACAGAC
CTTGTTGGCCAAGATCTTGATGCAGAGGAGAAGGAATACAGTTTGTGCAATCACAGCGAG
AGGCTTGCTGTTGCCTTTGGGATTCTTAATTTGGATGGTGCATCATCCATTAGGGTGTTT
AAAAACTTGAGAATATGTGGAGATTGCCATAATGCCATTAAGTATTTGGCTAAGATTGTC
GGGGTGCAGATCATTGTTAGAGATCCTCTAAGATTCCACCATTTTAAAGATGGGTTATGC
TCCTGTAGAGATTTTTGGTGA

Peptide Sequence

PEP ID

Solyc02g065410.2.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103YH70_CYNCS)
Sequence

MFIRREETGEFTLHFYNLYLYKAKERQKTQCVSHFCEIGESDESVYFFSYIWANHFCKAK
HMLSKLPSFGLTPNSQFLRALGPSGDIRRARQLFDEIPHPDIRSWTLLITAYTKSGFPKE
ALEVYDELRARKVHPDQLALLSVTRACAALGNLIKAKGIHEDVIRYGYRADLLLGNALID
MYGKCKYAQGAREVFDNLSVKDVISWTSMSSCYVNCKLPSEALIMFREMGLDGVKPNPVT
LSTVLPACSDLKSLDLGREIHGYIVRNGIHDNVYVSSALVDMYASCSRIKQAEMIFNSTR
QFDYVLCNVIMSAYFSNGECDKALCIFDQLRKGRTKLNHDSWNSVIGGCMQSGRTDKALQ
VLHEMQQSGVKPNKITITSVLPTCIDLGSIRRGKEIHGFLLRHIFLEDETVFTALVLMYA
RCGDLELSKRVFYMMPKKDTIAWNTMIIGNSMHGNGEDALLLFREMVSSGVKPNSVTFTG
VLSGCSHSQLVDKGLMIFYAMSKEHGVEPDSEHYSCMVDALSRAGRLEQAYDFIQNMPMK
PSAGAWGALLGACRVYKNVEMARVAGKQLLEIEPENAGNYVLLSNIYEAAKLRDEASEIR
KLMRERGIMKVPGCSWIQVKDKVHTFVVGDKNNAQTADIYSFLTEVGEKMRLAGYLPCTD
LVGQDLDAEEKEYSLCNHSERLAVAFGILNLDGASSIRVFKNLRICGDCHNAIKYLAKIV
GVQIIVRDPLRFHHFKDGLCSCRDFW*

Transcript Sequence

Transcript ID

Solyc02g065410.2.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103YH70_CYNCS)
Sequence

ATGTTTATTAGGAGAGAGGAGACAGGTGAATTTACATTACATTTTTATAATTTGTATTTA
TATAAAGCAAAAGAGAGACAGAAGACACAATGTGTGAGCCACTTTTGCGAGATTGGGGAG
AGTGACGAAAGTGTGTACTTTTTTTCTTATATTTGGGCAAACCACTTTTGCAAGGCTAAG
CACATGCTGTCGAAGCTACCCTCATTCGGTCTAACTCCAAACTCACAGTTTCTGCGTGCA
CTTGGACCTTCTGGAGATATACGACGTGCCCGTCAACTGTTTGATGAAATTCCCCACCCA
GATATACGATCATGGACGCTCTTGATCACCGCATACACAAAGAGTGGATTTCCAAAAGAA
GCATTGGAAGTCTATGATGAATTGCGGGCAAGGAAAGTTCATCCTGATCAATTGGCACTA
TTATCAGTAACCAGGGCCTGTGCTGCTTTGGGCAACTTGATAAAGGCAAAAGGTATTCAT
GAAGATGTAATTAGATATGGATATCGCGCTGATTTGCTCCTTGGAAATGCATTGATTGAT
ATGTATGGCAAGTGTAAATATGCTCAAGGTGCAAGAGAGGTTTTTGATAATTTAAGTGTT
AAAGATGTAATCTCTTGGACGTCGATGAGTTCGTGCTATGTTAATTGTAAACTTCCAAGT
GAGGCGTTAATAATGTTCCGTGAAATGGGGTTAGATGGGGTGAAGCCTAATCCTGTTACG
TTGTCTACTGTACTTCCTGCCTGCTCAGATTTGAAAAGTTTGGATTTAGGTAGAGAGATT
CACGGGTATATTGTGAGAAATGGAATACATGATAATGTGTATGTTAGCAGTGCTCTTGTG
GACATGTATGCTAGTTGTTCAAGAATCAAACAAGCAGAGATGATATTTAATAGTACGCGT
CAGTTTGACTATGTCTTATGCAATGTTATTATGTCAGCATATTTCTCAAATGGGGAATGT
GACAAAGCACTTTGCATCTTTGATCAGTTGCGAAAAGGAAGAACCAAACTGAATCATGAT
TCCTGGAATTCTGTTATTGGAGGATGTATGCAAAGTGGAAGAACAGATAAGGCACTTCAA
GTACTTCATGAAATGCAGCAGTCAGGTGTAAAACCAAATAAAATCACGATCACCAGTGTA
TTACCTACTTGTATAGATCTAGGAAGCATAAGAAGAGGGAAGGAGATTCATGGTTTTCTC
CTTCGACATATATTTTTGGAAGATGAGACAGTCTTCACTGCTTTGGTACTCATGTATGCT
AGATGTGGTGACCTAGAACTATCCAAAAGAGTCTTCTATATGATGCCAAAAAAAGATACT
ATTGCTTGGAACACAATGATCATTGGAAATTCAATGCATGGGAACGGAGAGGATGCCTTG
TTGCTTTTCCGTGAAATGGTAAGTTCAGGGGTGAAACCCAACTCTGTTACCTTTACTGGT
GTCTTATCGGGTTGCAGCCATTCACAGCTGGTAGACAAGGGCCTTATGATCTTTTACGCA
ATGAGTAAGGAACATGGAGTTGAACCTGATTCAGAACATTATTCATGCATGGTTGATGCT
CTAAGCCGTGCTGGTCGCCTAGAACAGGCATATGATTTCATCCAAAACATGCCCATGAAA
CCAAGTGCTGGTGCTTGGGGAGCATTGCTTGGTGCATGTAGAGTATATAAGAATGTGGAA
ATGGCACGAGTTGCTGGAAAACAACTGTTGGAGATTGAGCCAGAAAACGCTGGGAACTAT
GTTTTATTGTCCAATATCTATGAAGCTGCCAAATTACGAGACGAGGCCTCAGAAATTAGG
AAATTGATGAGAGAAAGAGGCATTATGAAAGTTCCTGGTTGTAGTTGGATTCAAGTGAAA
GACAAAGTGCATACTTTTGTTGTCGGTGACAAGAATAATGCGCAGACTGCGGACATTTAC
AGCTTTTTGACTGAAGTAGGTGAAAAGATGAGGTTAGCTGGGTATTTACCCTGTACAGAC
CTTGTTGGCCAAGATCTTGATGCAGAGGAGAAGGAATACAGTTTGTGCAATCACAGCGAG
AGGCTTGCTGTTGCCTTTGGGATTCTTAATTTGGATGGTGCATCATCCATTAGGGTGTTT
AAAAACTTGAGAATATGTGGAGATTGCCATAATGCCATTAAGTATTTGGCTAAGATTGTC
GGGGTGCAGATCATTGTTAGAGATCCTCTAAGATTCCACCATTTTAAAGATGGGTTATGC
TCCTGTAGAGATTTTTGGTGAAATAACAAATGCCATCAAGTATTTAACTT