Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g021640.3.1
CDS Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT1G30440.1)
Sequence

ATGGCATGTATGAAGTTGGGATCCAAAACAGATGCATTCCAAAGAAAAGGCCAGGCCTGG
TTCTGCACAACTGGCCTCCCAAGTGACATTGTTGTTGAAGTTGGGGAAATGACTTTCCAT
CTCCACAAGTTCCCATTGCTTTCTAGAAGTGGGGTTATGGAAAAACGGATTGCAGAAGCA
TCTGAAGGAGAAGATGGCTGTGTTATTGAACTCAATGACATCCCTGGTGGTGCTAAAACA
TTTGAACTAGTAGCAAAATTTTGTTATGGGGTTAAACTAGAGCTTACAGCAGGTAATGCT
GTATACCTTCGCTGTGCCGCAGAGCATCTTGATATGACTGAAGAATATGGGGAGGGGAAT
CTGATATCACAGACTGAGATTTTTCTGAATCAGGTAGTTCTCCGTAGCTGGAAAGACTCT
TTAAAGGCACTCCAAACCTGTGATGATGTTCTTCCATATGCTGAAGAACTCAGAATTACA
AAAAGGTGCATCGATTCATTAGCTGTTAAGGCATGTACTGATCCGAACCTGTTTGGTTGG
CCTGTGATGGAGCACGTTGGCCCCTTGCAGAGTCCTGGAGGGAGTATCCTATGGAATGGA
ATAAGCACTGGAGCTAGGCCAAAACATTCAAGTTCAGATTGGTGGTATGAGGATGCATCA
ACTTTAAGTTTACCTCTTTACAAGAGGCTAATTTCTGCTATGGAATCTCAAGGCGTCAAA
CAGGATATTGTTGCTGGTTCCCTCAGTTATTATGCTAAAAAGTACCTGCCTGGGCTAAAC
AGGCGGCAGACCTCTTCTGAGTCCACTAACCGACTTGCACCAGTTGGTTTAGGTTCTTCT
CTATCAGAAGAAGATCAGAAGCTTTTACTTGAAGAGGTGGATAATTTACTTCCCATGCAA
AAAGGCCTAGTTCCAACTAAATTCCTCTTTGGCCTACTGAAAACAGCTTTGATTCTTCGA
GCCTGTCCCTCTTGCATATCAAACTTGGAGAAAAGGATAGGAATGCAGCTTGATCAGGCC
ACTCTAGAAGATCTCTTAATGCCTAATTTCTCTTACTCGATGGAAACACTTTATAATGTT
GACTGCGTACAGAGAATTCTAGAGCACTTCTTAGCCATGGATCAAGGAACTGGTGGTGAA
TCACCTTGTTCCATTGATGATGAGCAATTGATTGGTTCACCATCTCTGACACCAATCACT
ATGGTGGCAAAACTAATCGATGGATATCTTGCTGAGGTTGCCCCAGATGTTAACTTGAAG
CTTCCCAAATTTCAGACTCTTGCTGCTTCTGTTCCTGAATATGCAAGGCCCTTGGATGAT
GGCCTTTATCGTGCAATTGACATTTATCTCAAGTCACATCCATGGTTGGGAGAATCTGAT
AGGGAACAACTCTGCAGGCTCATGGATTGCCAGAAACTCTCCTTGGAAGCTTGTACACAT
GCTGCACAGAATGAACGGCTCCCTTTAAGGATTATAGTACAAGTACTCTTCTTTGAACAG
CTGCAGTTGAGAACATCCATTGCAGGATGCTTCCTAGTGTCTGAAAACCTTGATGAGGGG
TCAAGGCAGTTAAGAAGTGGCACGGTGGGACCAAATGAGGGGGGCTGGGCTACTGCTGTG
AGAGAAAACCAGGTGTTGAAGGTGGGAATGGATAGTATGAGGGTGCGCGTGTCAGAGCTC
GAGAAGGAGTGCTCAACCATGAGGCAGGAGATTGAGAAGTTGGGTCGATCAAAGGGATCA
AGCACTTGGGGAAATGTATCCAAGAAGTTTGGTTTCAAGATGAAATCTCAAATGTGCAGT
GCTCAGGAGGGATCTGTTAGTAACCAGAACAAGATAAATAGTAAGGCTATAAAGGATGAC
AAGGCAAAAGAAAACTATCGAAAGCACTAG

Peptide Sequence

PEP ID

Solyc02g021640.3.1
PEP Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT1G30440.1)
Sequence

MACMKLGSKTDAFQRKGQAWFCTTGLPSDIVVEVGEMTFHLHKFPLLSRSGVMEKRIAEA
SEGEDGCVIELNDIPGGAKTFELVAKFCYGVKLELTAGNAVYLRCAAEHLDMTEEYGEGN
LISQTEIFLNQVVLRSWKDSLKALQTCDDVLPYAEELRITKRCIDSLAVKACTDPNLFGW
PVMEHVGPLQSPGGSILWNGISTGARPKHSSSDWWYEDASTLSLPLYKRLISAMESQGVK
QDIVAGSLSYYAKKYLPGLNRRQTSSESTNRLAPVGLGSSLSEEDQKLLLEEVDNLLPMQ
KGLVPTKFLFGLLKTALILRACPSCISNLEKRIGMQLDQATLEDLLMPNFSYSMETLYNV
DCVQRILEHFLAMDQGTGGESPCSIDDEQLIGSPSLTPITMVAKLIDGYLAEVAPDVNLK
LPKFQTLAASVPEYARPLDDGLYRAIDIYLKSHPWLGESDREQLCRLMDCQKLSLEACTH
AAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSENLDEGSRQLRSGTVGPNEGGWATAV
RENQVLKVGMDSMRVRVSELEKECSTMRQEIEKLGRSKGSSTWGNVSKKFGFKMKSQMCS
AQEGSVSNQNKINSKAIKDDKAKENYRKH*

Transcript Sequence

Transcript ID

Solyc02g021640.3.1
Transcript Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT1G30440.1)
Sequence

GATAAATATTATTGGAACAAAAGAAAAATTAGTATGACATGATAGAGAGAATGAAATTAA
TTAAGCAAAATGAGTGCATTTTAAGGAAAAAAACTGAACAAAGCTCTACCAAATAGCATT
AATTAATTAATTAGCAAAACAATGGTGAGATATTTTCTTACATTTTCATCATGCCTTAAA
TTTTCTCTCTCTCTATTAATGGGGTTGTTTAAGGGTTGAGTGTTGGAATCTTATGGTGAC
AAGTGGGTATTTATTGGAATTGGAATTGGAGTTGACCTAAATTTATTGTCTCATTTCGGA
AACAATACTTGTCTTAAACTGAGAGATTTGTGAAGTGGGTATTTTGAGTAAAGTAGGTGC
ATTTTGGTGGATCTGTACAAGTTTGTTGTTGGTGAAGCAGCTCAATAAAGGAGTGTGTGT
ATGTGGATGAATTAAGGGGGTTTGTGTTTGTAACAGTCGAGGGGGAGATATGGCATGTAT
GAAGTTGGGATCCAAAACAGATGCATTCCAAAGAAAAGGCCAGGCCTGGTTCTGCACAAC
TGGCCTCCCAAGTGACATTGTTGTTGAAGTTGGGGAAATGACTTTCCATCTCCACAAGTT
CCCATTGCTTTCTAGAAGTGGGGTTATGGAAAAACGGATTGCAGAAGCATCTGAAGGAGA
AGATGGCTGTGTTATTGAACTCAATGACATCCCTGGTGGTGCTAAAACATTTGAACTAGT
AGCAAAATTTTGTTATGGGGTTAAACTAGAGCTTACAGCAGGTAATGCTGTATACCTTCG
CTGTGCCGCAGAGCATCTTGATATGACTGAAGAATATGGGGAGGGGAATCTGATATCACA
GACTGAGATTTTTCTGAATCAGGTAGTTCTCCGTAGCTGGAAAGACTCTTTAAAGGCACT
CCAAACCTGTGATGATGTTCTTCCATATGCTGAAGAACTCAGAATTACAAAAAGGTGCAT
CGATTCATTAGCTGTTAAGGCATGTACTGATCCGAACCTGTTTGGTTGGCCTGTGATGGA
GCACGTTGGCCCCTTGCAGAGTCCTGGAGGGAGTATCCTATGGAATGGAATAAGCACTGG
AGCTAGGCCAAAACATTCAAGTTCAGATTGGTGGTATGAGGATGCATCAACTTTAAGTTT
ACCTCTTTACAAGAGGCTAATTTCTGCTATGGAATCTCAAGGCGTCAAACAGGATATTGT
TGCTGGTTCCCTCAGTTATTATGCTAAAAAGTACCTGCCTGGGCTAAACAGGCGGCAGAC
CTCTTCTGAGTCCACTAACCGACTTGCACCAGTTGGTTTAGGTTCTTCTCTATCAGAAGA
AGATCAGAAGCTTTTACTTGAAGAGGTGGATAATTTACTTCCCATGCAAAAAGGCCTAGT
TCCAACTAAATTCCTCTTTGGCCTACTGAAAACAGCTTTGATTCTTCGAGCCTGTCCCTC
TTGCATATCAAACTTGGAGAAAAGGATAGGAATGCAGCTTGATCAGGCCACTCTAGAAGA
TCTCTTAATGCCTAATTTCTCTTACTCGATGGAAACACTTTATAATGTTGACTGCGTACA
GAGAATTCTAGAGCACTTCTTAGCCATGGATCAAGGAACTGGTGGTGAATCACCTTGTTC
CATTGATGATGAGCAATTGATTGGTTCACCATCTCTGACACCAATCACTATGGTGGCAAA
ACTAATCGATGGATATCTTGCTGAGGTTGCCCCAGATGTTAACTTGAAGCTTCCCAAATT
TCAGACTCTTGCTGCTTCTGTTCCTGAATATGCAAGGCCCTTGGATGATGGCCTTTATCG
TGCAATTGACATTTATCTCAAGTCACATCCATGGTTGGGAGAATCTGATAGGGAACAACT
CTGCAGGCTCATGGATTGCCAGAAACTCTCCTTGGAAGCTTGTACACATGCTGCACAGAA
TGAACGGCTCCCTTTAAGGATTATAGTACAAGTACTCTTCTTTGAACAGCTGCAGTTGAG
AACATCCATTGCAGGATGCTTCCTAGTGTCTGAAAACCTTGATGAGGGGTCAAGGCAGTT
AAGAAGTGGCACGGTGGGACCAAATGAGGGGGGCTGGGCTACTGCTGTGAGAGAAAACCA
GGTGTTGAAGGTGGGAATGGATAGTATGAGGGTGCGCGTGTCAGAGCTCGAGAAGGAGTG
CTCAACCATGAGGCAGGAGATTGAGAAGTTGGGTCGATCAAAGGGATCAAGCACTTGGGG
AAATGTATCCAAGAAGTTTGGTTTCAAGATGAAATCTCAAATGTGCAGTGCTCAGGAGGG
ATCTGTTAGTAACCAGAACAAGATAAATAGTAAGGCTATAAAGGATGACAAGGCAAAAGA
AAACTATCGAAAGCACTAGAAAAACTTATCGATAGATGAATGATGAATTATTCTCTGTTT
CTCTATTCTTTGAAGGATCTTGGCTTGCTTCTGTTTAGTTTAAGTTTCTCCAGTTTCTGT
CATATATGTCGAGTAGTTTCTTTGACAATCTGGTCTACGTAGACTACATACAATTAACAT
CATCAAGTGTATTTTATGTATCTTATCTAGAATTGTTTGTCACTCTTTTTACCTTCAACA
ATAAGTGCAAACATCTAAATTTGTCCAAATCATCTGTTGTAGTGTGAGTTGTTTGAATGA
AGAATTTTTGCTT