Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g021360.3.1
CDS Infomation

Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 *** K4B4Y6_SOLLC)
Sequence

ATGACTACTACTAAGCGTGCTTATAAGTTACAGGAATTCGTAGCTCATTCTTTAAGCGTG
AACTGCTTGAAGATTGGAAGGAAGTCATCCCGGGTTCTTCTAACTGGGGGAGAAGATCAC
AAGGTTAACCTTTGGGCCATTGGCAAGCCCAATGCCATCTTGAGCTTGTCAGGTCATTCA
AGCGGAATTGATTCAGTTAGCTTTGATTCTTCAGAGGTATTGGTAGCTGCTGGAGCGGCA
AGTGGTACTATCAAGCTTTGGGATTTAGAGGAGGCCAAGATTGTTCGCACACTCACTGGA
CACCGATCCAACTGTATATCATTGGACTTTCATCCCTTTGGTGAATTTTTTGCATCTGGG
TCTCTTGATACAAACCTAAAGATTTGGGATATCAGACGAAAAGGGTGTATCCACACATAC
AAAGGTCACAGCAGAGGTGTCAATGCCATCAGGTTCACTCCAGATGGCCGATGGGTTGTA
TCTGGTGGGGAAGACAATACTGTCAAGCTATGGGATTTGACTGCAGGAAAGCTTTTACAC
GATTTCAAATGTCATGAAGGGCAGATTCAGTGTATAGACTTTCACCCCCATGAGTTTCTA
CTTGCAACAGGTTCTGCTGACAGAACTGTAAAATTCTGGGACCTTGAAACTTTTGAGCTC
ATAGGTTCATCTGGACCTGAGACATCAGGGGTGCGCTGTATGACCTTCAATCCCGATGGA
AGAACCCTTCTCTGTGGTTTGCATGAGAGTTTGAAGGTTTGCTCGTGGGAACCAATTAAA
TGTCATGATACAGTAGATGTTGGATGGTCTCGATTGTCAGATCTTAATATTCACGAAGGC
AAACTCCTTGGCTGCTCTTACAATCAAAGTTGTGTTGGAGTGTGGGTTGTGGATATTTCG
CGTCTTGAACCATATGCAATGGGTAGTACTACTCGATTGAATGGTCATTCTGATGTAAAA
TCGAATTCCAGTATGAAATTATCCAATCTGGCCGAGGATGCTAGTAAAGCCAATTTGGGT
AGACTCTCAATTTCTCAAGATTCTGATCCTGTTAAAGAGACCAAGTCTTTTGGAAGACTT
TCAGTTTCACAAAACTTGGATCAAAGGGATTCTAGGGCTCTTGCTACTACTGCAAGTGCA
CCTGGCACTCCTCAAAGAATAAATCTGAGTGTTGGCTCGAAAGCAGCTCCAATTAATACA
ACAGCAGTTCCAAATACAACTGTTTTGAAGAGGAATTCAGCTAAAGCCCAATCAACAGCA
AATTCTTCCATTATCAATAGATCAGAGATCATACCTGTTATCGTGCCTAGAAATAATGAC
AGAATGGAGCAAGCATCTGAACCCAGGAAAGAAGGAACCGCAACAAGGGCAATACAGCAG
TTATCGCAGACAAAAGTCTCTGATTTACGGAAGTTTCCAACTCTCAAGGAAGACCTTGGG
AGGTCAAATGCTGTGTCACAGTCTGACATTGAAGTCCCTAAGGCTATTGAGTTCAGCAGT
ATAGCAGACAAGAACATTTTCCCTTCAGTTAAATGCTCAATACTTGGAGCTGCAGCAACT
GAGAGGAATGTGAAGGATGACAATAGTTTTGTTTCAACAAAACCTGAAATGCATTCAGCA
CCTGAGTTACTTTCCAGAAACCAAAATGAAAATTATGAAGCACGTGGAAATGTTGTTAGG
AGTGTTAATCCCATGGAAGGTCAAAGAAGAGCAAGGACACGGTCTATTGTTGCAAATTGG
GAGAAGAGAGAGAGGATTCAATATCAAGAGTGTCTTGCTCCCAGCAATGTTGTTGGGACA
GTACCGGCTCTAAATATGCTTCCAATCAATTCGAGAGGGCATCCTTCATCAGCAGGAAGT
GTAACAGTTTCTGCTACAGATGAGGATGTCATCACTGACTTGATGGAACAACATGACCAA
TTTGTTGGCTCAATGCAATCTCGTTTGGCCAAATTACAGGTTGTTTATCAATACTGGCAA
AGACATGACACTAAAGGGGCACTTAATGCAACGGAGAAGATGGCAGATCCTGCAGTGCTT
GCTGATGTAATAAGCTTTTTAACAGAGAAAAATGACATGATCACATTAGAGATTTGCACA
TGCCTTCTACCACTGCTTGGGGGGTTGCTTGAGAGCAACTTGGATAGGCATCAAGACATT
TCATTGATTATGCTGCTCAAACTTGTTAAAGTATATGGTTCAGTGATTTATTCTTCAATA
TCTGCACCAGCATCAGTTGGTGTTGATATTGAGGCAGAGCAAAGGATGGAGCGCTACAAC
CTTTGCTTTGTTGAGCTTGAAAAAGTAAAAAATTGGCTGCCTGCTCTTACTAGAAGGGGA
GGGTCCATTGCCAAGTCTGCTCAGGAGCTGAGTTTAGCACTTCAAGATTTTTCGTGA

Peptide Sequence

PEP ID

Solyc02g021360.3.1
PEP Infomation

Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 *** K4B4Y6_SOLLC)
Sequence

MTTTKRAYKLQEFVAHSLSVNCLKIGRKSSRVLLTGGEDHKVNLWAIGKPNAILSLSGHS
SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISLDFHPFGEFFASG
SLDTNLKIWDIRRKGCIHTYKGHSRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH
DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSSGPETSGVRCMTFNPDG
RTLLCGLHESLKVCSWEPIKCHDTVDVGWSRLSDLNIHEGKLLGCSYNQSCVGVWVVDIS
RLEPYAMGSTTRLNGHSDVKSNSSMKLSNLAEDASKANLGRLSISQDSDPVKETKSFGRL
SVSQNLDQRDSRALATTASAPGTPQRINLSVGSKAAPINTTAVPNTTVLKRNSAKAQSTA
NSSIINRSEIIPVIVPRNNDRMEQASEPRKEGTATRAIQQLSQTKVSDLRKFPTLKEDLG
RSNAVSQSDIEVPKAIEFSSIADKNIFPSVKCSILGAAATERNVKDDNSFVSTKPEMHSA
PELLSRNQNENYEARGNVVRSVNPMEGQRRARTRSIVANWEKRERIQYQECLAPSNVVGT
VPALNMLPINSRGHPSSAGSVTVSATDEDVITDLMEQHDQFVGSMQSRLAKLQVVYQYWQ
RHDTKGALNATEKMADPAVLADVISFLTEKNDMITLEICTCLLPLLGGLLESNLDRHQDI
SLIMLLKLVKVYGSVIYSSISAPASVGVDIEAEQRMERYNLCFVELEKVKNWLPALTRRG
GSIAKSAQELSLALQDFS*

Transcript Sequence

Transcript ID

Solyc02g021360.3.1
Transcript Infomation

Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 *** K4B4Y6_SOLLC)
Sequence

AAACATTTTTCAAAATTATTAGATTAAACATTACTATTATTGTTGTCTCCCTGCGATGGT
GAAAGGGGATCTTGAGAACTCCATTTTTTCTCTTTGTATTTGGCCATCGTTATTCAGGCT
GAGAAGACGAAGCTATCAGAACGTATTGGAGCTACAATTGAGTAGAGCAATGAAGAGCCA
TTGTTGCTAAACAAATTCGTTTGTTTGAACTCTCAATTTAAACCTAACAACGATTAATCA
ACTGTTACATTTGCACGCTTCGAATGGGAGAAGTGGTTCTGTAGCGAAGCATTTTGAGTA
GAGGAATGTGATTGAGAAGCCCTTTTTCCTGTACTAGTGGTAGTAATTGTTGTTGCGAAA
ATGTGGAGGAGGTTCATCGGGATCTTGAGCGTTTATCGCTCTCAGATTCACTAGTATGAC
GACAGCCCTGCCATTATTTCTCGCGTGCACTAGGGTTTTCTGCCGTAGACATTTCCATTT
CCGAAAGAGATTTTGACTTTTCTCCATGACTACTACTAAGCGTGCTTATAAGTTACAGGA
ATTCGTAGCTCATTCTTTAAGCGTGAACTGCTTGAAGATTGGAAGGAAGTCATCCCGGGT
TCTTCTAACTGGGGGAGAAGATCACAAGGTTAACCTTTGGGCCATTGGCAAGCCCAATGC
CATCTTGAGCTTGTCAGGTCATTCAAGCGGAATTGATTCAGTTAGCTTTGATTCTTCAGA
GGTATTGGTAGCTGCTGGAGCGGCAAGTGGTACTATCAAGCTTTGGGATTTAGAGGAGGC
CAAGATTGTTCGCACACTCACTGGACACCGATCCAACTGTATATCATTGGACTTTCATCC
CTTTGGTGAATTTTTTGCATCTGGGTCTCTTGATACAAACCTAAAGATTTGGGATATCAG
ACGAAAAGGGTGTATCCACACATACAAAGGTCACAGCAGAGGTGTCAATGCCATCAGGTT
CACTCCAGATGGCCGATGGGTTGTATCTGGTGGGGAAGACAATACTGTCAAGCTATGGGA
TTTGACTGCAGGAAAGCTTTTACACGATTTCAAATGTCATGAAGGGCAGATTCAGTGTAT
AGACTTTCACCCCCATGAGTTTCTACTTGCAACAGGTTCTGCTGACAGAACTGTAAAATT
CTGGGACCTTGAAACTTTTGAGCTCATAGGTTCATCTGGACCTGAGACATCAGGGGTGCG
CTGTATGACCTTCAATCCCGATGGAAGAACCCTTCTCTGTGGTTTGCATGAGAGTTTGAA
GGTTTGCTCGTGGGAACCAATTAAATGTCATGATACAGTAGATGTTGGATGGTCTCGATT
GTCAGATCTTAATATTCACGAAGGCAAACTCCTTGGCTGCTCTTACAATCAAAGTTGTGT
TGGAGTGTGGGTTGTGGATATTTCGCGTCTTGAACCATATGCAATGGGTAGTACTACTCG
ATTGAATGGTCATTCTGATGTAAAATCGAATTCCAGTATGAAATTATCCAATCTGGCCGA
GGATGCTAGTAAAGCCAATTTGGGTAGACTCTCAATTTCTCAAGATTCTGATCCTGTTAA
AGAGACCAAGTCTTTTGGAAGACTTTCAGTTTCACAAAACTTGGATCAAAGGGATTCTAG
GGCTCTTGCTACTACTGCAAGTGCACCTGGCACTCCTCAAAGAATAAATCTGAGTGTTGG
CTCGAAAGCAGCTCCAATTAATACAACAGCAGTTCCAAATACAACTGTTTTGAAGAGGAA
TTCAGCTAAAGCCCAATCAACAGCAAATTCTTCCATTATCAATAGATCAGAGATCATACC
TGTTATCGTGCCTAGAAATAATGACAGAATGGAGCAAGCATCTGAACCCAGGAAAGAAGG
AACCGCAACAAGGGCAATACAGCAGTTATCGCAGACAAAAGTCTCTGATTTACGGAAGTT
TCCAACTCTCAAGGAAGACCTTGGGAGGTCAAATGCTGTGTCACAGTCTGACATTGAAGT
CCCTAAGGCTATTGAGTTCAGCAGTATAGCAGACAAGAACATTTTCCCTTCAGTTAAATG
CTCAATACTTGGAGCTGCAGCAACTGAGAGGAATGTGAAGGATGACAATAGTTTTGTTTC
AACAAAACCTGAAATGCATTCAGCACCTGAGTTACTTTCCAGAAACCAAAATGAAAATTA
TGAAGCACGTGGAAATGTTGTTAGGAGTGTTAATCCCATGGAAGGTCAAAGAAGAGCAAG
GACACGGTCTATTGTTGCAAATTGGGAGAAGAGAGAGAGGATTCAATATCAAGAGTGTCT
TGCTCCCAGCAATGTTGTTGGGACAGTACCGGCTCTAAATATGCTTCCAATCAATTCGAG
AGGGCATCCTTCATCAGCAGGAAGTGTAACAGTTTCTGCTACAGATGAGGATGTCATCAC
TGACTTGATGGAACAACATGACCAATTTGTTGGCTCAATGCAATCTCGTTTGGCCAAATT
ACAGGTTGTTTATCAATACTGGCAAAGACATGACACTAAAGGGGCACTTAATGCAACGGA
GAAGATGGCAGATCCTGCAGTGCTTGCTGATGTAATAAGCTTTTTAACAGAGAAAAATGA
CATGATCACATTAGAGATTTGCACATGCCTTCTACCACTGCTTGGGGGGTTGCTTGAGAG
CAACTTGGATAGGCATCAAGACATTTCATTGATTATGCTGCTCAAACTTGTTAAAGTATA
TGGTTCAGTGATTTATTCTTCAATATCTGCACCAGCATCAGTTGGTGTTGATATTGAGGC
AGAGCAAAGGATGGAGCGCTACAACCTTTGCTTTGTTGAGCTTGAAAAAGTAAAAAATTG
GCTGCCTGCTCTTACTAGAAGGGGAGGGTCCATTGCCAAGTCTGCTCAGGAGCTGAGTTT
AGCACTTCAAGATTTTTCGTGAGTTAAATGCAGTATTGGATGGATTAGTAAGAGCTATAT
TTTCGGCAGTAACTGTGATGTTCATATGGAGTGGCTTTTGGAGCTCTGGAGCTGCCTGTG
CTGTATGCTCTTTGACCTGGCAGAGTTAGCATTCTGCATGTATATTCCTGCCAAGACAAA
ACATTGACAACTCATATTCTTATTACTGATTACTGAGAGCTAGGGGACAACCTGATCTAC
ACTGCTGCTGCACCAAATGTTTGGCAATTGAACGTTCATGGTGGAGGGATCCACCATATT
TATTCTCATCTAACCCTGGATGCCTGATATTCACATTTCGATTTGTAATTGTAGGTTTGA
GTAAAATCATGTATCAATATGATCATGATTTCAGTATCAATAGAAGAGTGCTAAACTGCG
TGAAATCTGGAAAATCTTGTCAGCATCCACAATTAGATATATAGCATTTCTAACGAGTAA
ATGACACAAAGGGTGTTATGAAATCTATGTTGCAACTACGTTGTATTTGAAAAAAAAAAA
AAGACAGCAAATTGCATTTTCTTGGTTTCGGTTATAAATTCTCGTTTTCTATTATGTGAA
TTCATTGACAATATACAGCACAGCTATTGTTGATCACACAATTATGTGAATGTTGCATGG
TACTACAAAAACCATCAAA