Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc02g020980.3.1
CDS Infomation

4-alpha-glucanotransferase (AHRD V3.3 *** Q6R608_SOLTU)
Sequence

ATGGGAAAAGATGACTTCCCTTTAAAATACAAGTACTGCAAACATAGTAAGGCTGGAACA
TCAGTGGAATGTGGTGCCAGTCGCGAGATTTCTGTTGATGTCACAATAGGTGAATCTAAA
TTTGTAGTTCTTTCAGATGGCTTAATGCGGGAAATGCCATGGAGGGGAGCAGGTGTCTCA
ATACCCATGTTTTCCGTACGGTCAGAGGCTGATCTTGGAGTTGGGGAGTTTCTTGACCTG
AAGTTACTTGTAGATTGGGCCGTTGAATCTGGCTTTCATTTGGTTCAGCTTTTGCCCATC
AATGATACATCAGTCAACTGTATGTGGTGGGATTCGTACCCTTATAGCTCTCTCTCAGTA
TTTGCCTTGCACCCATTGTACCTACGGGTAGAGGCCATTTCAGCGAACATTCCAGAGGAT
ATCAAGCAAGAGATCAGGGAGGCAAGAGTTCAGTTGGATAAAAAGGATGTAGATTATGAA
GCTTGCATGGCTACAAAACTTTCTATTGCCAAGAAAATTTTCGCTCGGGAGAAGGAGACA
ATACTAAACTCAAAATCATTCCAGGAGTTCTTCTCTGAAAATCAGGAATGGTTGAAACCC
TATGCTGCTTTCTGTTTTCTGCGGAACTTCTTCGAAACATCCGAGCGCAGTCAATGGGGC
CGGTTTTCTGAATTTTCAAAAGAAAAGCTTGAGAAGCTACTCTCTAAAGAAAGCTTGCAC
TATGAAGTTGTTAGTTTTTATTACTACATCCAGTTCCATTTGCATCTACAATTATCAGAA
GCTGCGGAATATGCACGAAAGAAAGGTGTAGTGCTGAAAGGTGACCTGCCCATTGGTGTT
GACAGGAATAGTGTCGATACCTGGGTCTACCCAAATTTGTTTCGCATGAACACCTCAACT
GGGGCCCCCCCTGACTATTTTGATAAAAACGGCCAGAATTGGGGATTCCCCACTTATAAT
TGGGAAGAAATGTCAAAAGATAACTATGGTTGGTGGCGTGCTCGTCTAACACAGATGGGG
AAGTACTTTACAGCTTATAGGATTGATCACATATTGGGATTCTTCAGAATATGGGAGCTC
CCAGAACATGCAATGACTGGCCTTTGTGGAAAATTTCGACCTTCTATTCCTATTAGTCAG
GAAGAACTCGAGTCAGAAGGATTATGGGACTTCAACCGTCTTACCCATCCTTATATTGGA
CAAGATCTTTTACAGGAAAAATTCGGAGCTTCTTGGACTATAATTGCCTCTACCTTTTTG
AATGAATATCAGAAGGGCTTTTACGAGTTCAAGGACAAATGCAATACTGAGAAGAAAATT
GCATCTGCGCTGAAGTCAGTCTTGGAAACATCCATGTTTTTAGAGAGTGAAGTGAAACTA
CGACGAAAACTCTTTGATCTTCTGCAGAATGTGGCGCTTATTAACGATCCAGAAGATCCA
AGAAAGTTTTACCCTCGCTTCAATGTTGAAGACACAACAAGCTTTATGGATTTGGATCAG
CACAGTCAAAATGTCCTAAAAAGATTATACTATGATTACTACTTCCATCGACAAGAAGGT
CTTTGGCGTGACAATGCCTTTAAGACTCTGCCTGTTCTTTTGAACTCATCAGACATGCTC
GCTTGTGGGGAAGACCTAGGCCTAATTCCCTCCTGTGTTCATCCTGTTATGCAAGAACTG
GGCTTAGTAGGCCTACGCATTCAACGCATGCCAAGTGAACCTGATCTAGAATTTGATATT
CCTTCTCAATACAACTACATGACGGTTTGTGCTCCATCATGCCATGACTGTTCTACTCTA
CGTGCTTGGTGGGAGGAAGATGAAGAGAGAAGGCACCGCTTTTTTCAAGCAGTGATGGGA
TCTGATGAGTTGCCACCTGATCAATGCACTCCTGAAATTGTGCACTTTGTCTTGCGACAG
CATGTTGAAGCCCCATCAATGTGGTCAATATTTCCCCTCCAGGATTTGCTAGCACTTAAA
GAAGATTACACGACACGGCCTGCAGTGGAAGAGACTATCAATGATCCAACAAACCCAAAA
CATTATTGGCGATATCGTGTACACGTGACAATGGAGTCCTTGCTTAATGATAAAGACCTC
ACAAAAACAATAAAGGATCTCGTCCATGGGAGTGGAAGGTTTTACCCTCAGAAAGATCTG
GAATCAGGTCACACAATTGGTGAAGGATCAGCAAAGCTGCAGCTACAGAGTGAACACCCT
TCACAAACACAGAAAAATGGACTCTCCAACAAATAA

Peptide Sequence

PEP ID

Solyc02g020980.3.1
PEP Infomation

4-alpha-glucanotransferase (AHRD V3.3 *** Q6R608_SOLTU)
Sequence

MGKDDFPLKYKYCKHSKAGTSVECGASREISVDVTIGESKFVVLSDGLMREMPWRGAGVS
IPMFSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNCMWWDSYPYSSLSV
FALHPLYLRVEAISANIPEDIKQEIREARVQLDKKDVDYEACMATKLSIAKKIFAREKET
ILNSKSFQEFFSENQEWLKPYAAFCFLRNFFETSERSQWGRFSEFSKEKLEKLLSKESLH
YEVVSFYYYIQFHLHLQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTST
GAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMGKYFTAYRIDHILGFFRIWEL
PEHAMTGLCGKFRPSIPISQEELESEGLWDFNRLTHPYIGQDLLQEKFGASWTIIASTFL
NEYQKGFYEFKDKCNTEKKIASALKSVLETSMFLESEVKLRRKLFDLLQNVALINDPEDP
RKFYPRFNVEDTTSFMDLDQHSQNVLKRLYYDYYFHRQEGLWRDNAFKTLPVLLNSSDML
ACGEDLGLIPSCVHPVMQELGLVGLRIQRMPSEPDLEFDIPSQYNYMTVCAPSCHDCSTL
RAWWEEDEERRHRFFQAVMGSDELPPDQCTPEIVHFVLRQHVEAPSMWSIFPLQDLLALK
EDYTTRPAVEETINDPTNPKHYWRYRVHVTMESLLNDKDLTKTIKDLVHGSGRFYPQKDL
ESGHTIGEGSAKLQLQSEHPSQTQKNGLSNK*

Transcript Sequence

Transcript ID

Solyc02g020980.3.1
Transcript Infomation

4-alpha-glucanotransferase (AHRD V3.3 *** Q6R608_SOLTU)
Sequence

ATGAAAGATAGAAATTGGGATAGAGGGAGGATATGCTTTACGCAAATTCAATCTCTACAT
TGGATACTCTGAAACCGATTGACATTTTTTGTACAACTAATTAGTTGGTTTAGCTACATT
TTGAGGAGTTCACTTGGTTTTATTCAGTTTAAGATGGTGAATTCGGGGTTGAAGTCAAGG
AAGGTGAGCTTCAGAATCCCATACTATACTCAGTGGGGGCAGAACGTTCTCATCTGTGGT
TCAGATCGGTTGCTTGGTTCATGGAATGTGAAAAAGGGTCTATTATTGAAGCCTTCTCAC
CAAGGGGAAGAGCTTATATGGTCTGGAAGCATTCCAGTTCCTCCTGGATATCAAAGTGAG
TACAGTTACTATGTGGTGGATGATAGAAGAAATATCCTGCGATGGGAGGTTGGAAAGAAA
AGGAAACTGTTGCTTCCTGATGGATTTCAGGATGGGCAATCACTAGAACTTCATGATCTC
TGGCAGGCTCATGCGACACCAATATCAAAGGGGAATGCTGATGTTGATGAGCTTTACTTT
GATCTAGCAACTTAAGTTTTTTCTTCTCTTGCAGACTGGTTCTGACAATATCCCTTTTAG
AAGTGCATTTAAGGATGTCATCTTTCGGACAAGTTGGAGTTTGGGCGGTGAAAGGCCCTT
GGAGATCACTCAGAATAAGCTGGACCAGGATGGTTCAGTTAATCTGCAATTTAGAATTTG
CTGCCCCTATTTAGAGGAAGGAACATCTATTTATGTGCTTGGCAGCTCCTTAAATCTTGG
GCAATGGAAGATTCAGGATGGCCTTAAGCTTGCATATGCTGGGGATTCATTATGGCAGGC
AGCCTGCGTTATGGGAAAAGATGACTTCCCTTTAAAATACAAGTACTGCAAACATAGTAA
GGCTGGAACATCAGTGGAATGTGGTGCCAGTCGCGAGATTTCTGTTGATGTCACAATAGG
TGAATCTAAATTTGTAGTTCTTTCAGATGGCTTAATGCGGGAAATGCCATGGAGGGGAGC
AGGTGTCTCAATACCCATGTTTTCCGTACGGTCAGAGGCTGATCTTGGAGTTGGGGAGTT
TCTTGACCTGAAGTTACTTGTAGATTGGGCCGTTGAATCTGGCTTTCATTTGGTTCAGCT
TTTGCCCATCAATGATACATCAGTCAACTGTATGTGGTGGGATTCGTACCCTTATAGCTC
TCTCTCAGTATTTGCCTTGCACCCATTGTACCTACGGGTAGAGGCCATTTCAGCGAACAT
TCCAGAGGATATCAAGCAAGAGATCAGGGAGGCAAGAGTTCAGTTGGATAAAAAGGATGT
AGATTATGAAGCTTGCATGGCTACAAAACTTTCTATTGCCAAGAAAATTTTCGCTCGGGA
GAAGGAGACAATACTAAACTCAAAATCATTCCAGGAGTTCTTCTCTGAAAATCAGGAATG
GTTGAAACCCTATGCTGCTTTCTGTTTTCTGCGGAACTTCTTCGAAACATCCGAGCGCAG
TCAATGGGGCCGGTTTTCTGAATTTTCAAAAGAAAAGCTTGAGAAGCTACTCTCTAAAGA
AAGCTTGCACTATGAAGTTGTTAGTTTTTATTACTACATCCAGTTCCATTTGCATCTACA
ATTATCAGAAGCTGCGGAATATGCACGAAAGAAAGGTGTAGTGCTGAAAGGTGACCTGCC
CATTGGTGTTGACAGGAATAGTGTCGATACCTGGGTCTACCCAAATTTGTTTCGCATGAA
CACCTCAACTGGGGCCCCCCCTGACTATTTTGATAAAAACGGCCAGAATTGGGGATTCCC
CACTTATAATTGGGAAGAAATGTCAAAAGATAACTATGGTTGGTGGCGTGCTCGTCTAAC
ACAGATGGGGAAGTACTTTACAGCTTATAGGATTGATCACATATTGGGATTCTTCAGAAT
ATGGGAGCTCCCAGAACATGCAATGACTGGCCTTTGTGGAAAATTTCGACCTTCTATTCC
TATTAGTCAGGAAGAACTCGAGTCAGAAGGATTATGGGACTTCAACCGTCTTACCCATCC
TTATATTGGACAAGATCTTTTACAGGAAAAATTCGGAGCTTCTTGGACTATAATTGCCTC
TACCTTTTTGAATGAATATCAGAAGGGCTTTTACGAGTTCAAGGACAAATGCAATACTGA
GAAGAAAATTGCATCTGCGCTGAAGTCAGTCTTGGAAACATCCATGTTTTTAGAGAGTGA
AGTGAAACTACGACGAAAACTCTTTGATCTTCTGCAGAATGTGGCGCTTATTAACGATCC
AGAAGATCCAAGAAAGTTTTACCCTCGCTTCAATGTTGAAGACACAACAAGCTTTATGGA
TTTGGATCAGCACAGTCAAAATGTCCTAAAAAGATTATACTATGATTACTACTTCCATCG
ACAAGAAGGTCTTTGGCGTGACAATGCCTTTAAGACTCTGCCTGTTCTTTTGAACTCATC
AGACATGCTCGCTTGTGGGGAAGACCTAGGCCTAATTCCCTCCTGTGTTCATCCTGTTAT
GCAAGAACTGGGCTTAGTAGGCCTACGCATTCAACGCATGCCAAGTGAACCTGATCTAGA
ATTTGATATTCCTTCTCAATACAACTACATGACGGTTTGTGCTCCATCATGCCATGACTG
TTCTACTCTACGTGCTTGGTGGGAGGAAGATGAAGAGAGAAGGCACCGCTTTTTTCAAGC
AGTGATGGGATCTGATGAGTTGCCACCTGATCAATGCACTCCTGAAATTGTGCACTTTGT
CTTGCGACAGCATGTTGAAGCCCCATCAATGTGGTCAATATTTCCCCTCCAGGATTTGCT
AGCACTTAAAGAAGATTACACGACACGGCCTGCAGTGGAAGAGACTATCAATGATCCAAC
AAACCCAAAACATTATTGGCGATATCGTGTACACGTGACAATGGAGTCCTTGCTTAATGA
TAAAGACCTCACAAAAACAATAAAGGATCTCGTCCATGGGAGTGGAAGGTTTTACCCTCA
GAAAGATCTGGAATCAGGTCACACAATTGGTGAAGGATCAGCAAAGCTGCAGCTACAGAG
TGAACACCCTTCACAAACACAGAAAAATGGACTCTCCAACAAATAAGCCGTGGCATTTGT
ATGACTATAAAACAATTTCCGTCTTTTAGATGCTCAGGTCAAAGACGAAACAAATAAATC
CTCCATGGCCTAGTCCGTCATGTGGTTCAATAGCTTGTCTTGCTTCATCATTAAACTGGA
TTTGAAGCTATATTTCATCAAAGAAATAAAGGAATCATTGTATGTTACTCTTTTGATTCT
CTTCAAGTGATGAAACTTGGTCAAAGATCAAGCCCTTTACTTGGTGTTAAATATTTGTCT
ATGATTTATCTTTAATCTTCCATACTTCTAGGGTGGCCCGAATTCAGGAAACT