Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g111937.1.1
CDS Infomation

Rop guanine nucleotide exchange factor, putative (AHRD V3.3 *** B9SR08_RICCO)
Sequence

ATGGGGAGTGTATCATCTGAAGAAGGTTCTGATCAGCAGAGTGAGAGATGTGGAAGCTAC
AGTTTAAGTGCTGATGTCAGTGAGTCTGAAAGTTCTTCAAGCAGTTTCTCTTGTCGGCGC
TATGATGCTGAAGGCGCATCCAGTTCTATGGCCTCTTCGCCGCTCCCTTGCCGGAGATTC
ACTGCCAAATCCGAGTTTCCCACACCAGTGCTACCTCCATTTATGTTCCCGGCGATTGGC
GGGAAAGATGTGGTGCTCTGCAATGACAAGTCTGAGAAACGCCAGGCAGATTTATCTGAA
ATTGATCTGATGAAGGAGAGATTTGCCAAGCTGCTTCTTGGTGAGGACATGTCTGGAGGG
GGTAAAGGGGTTTCTACGGCACTTGCAATCTCAAATGCTATCACAAATCTTTCTGCTACT
ATATTTGGAGAACTATGGAGGTTGGAGCCACTGGCCCTACAAAAGAAGGCAATGTGGTGT
AGGGAGATGGAGTGGCTGCTATGTGTTAGTGACTCTATTGTGGAGCTTGTGCCTTCCATT
CAACAATTCCCTGGAGGAGGCACATATGAAGTAATGGCAACAAGACCACGTTCTGATTTA
TACTTGAACCTGCCTGCTCTAAAGAAACTTGATGCTATGTTGATTAGCATTCTCGATGGA
TTTCGTGACACAGAGTTTTGGTATGTGGATCGAGGGATAGTTTTAGCTGAAGGAGATGAC
TGTGACTCTTTTCCTCCTGGAATAGGGTTTGGTAGGCCCTCAGTTCGACAGGAAGAGAAA
TGGTGGTTGCCTTGCCCTAAAGTCCCCCCAAAAGGGTTGTCTGAAGAAGCTAGGAAGAGA
GTGCAACAGTGTAGGGATTGCACTAACCAGATACTGAAGGCAGCCTTGGCAATCAACAGT
AATGTGCTCGCTGAAGTGGAGACTCCAAGTGCCTATATTGAAACTTTGCCCAAGAGTGGA
AAAGCATGTCTAGGTGATATCATCTATCGTTACATCACTGCTGACAATTTCTCACCTGAA
TGTCTTCTTGATTGCCTGGACTTGTCATCAGAGCACCATACGCTGGAAGTTGCAAATAGA
ATTGAGGCTGCTGTGCATGTTTGGAGACTGAAGGACCAGAAGAAACATCCACATAAAAGA
AAATCTAAAGGCAAGTCATGGGGAGGGAAGGTCAAGGGCCTTGTTGCAGATGGTGGTAAG
AATCAATATCTGGCAGAACGAGCAGAAACTCTCTTGCATAGTCTCAGGCTTCGCTTCCCT
GGTCTTCCTCAAACTGCACTTGACATGAACAAAATACAGTATAACAAGGATGTTGGACAG
TCAATTCTTGAGAGTTACTCAAGGGTCATGGAGAGCTTGGCATTTAACATTATGGCGAGG
ATTGACGATGTGTTATTCGTGGATGATGCCACAAAACGATGTGCTGCAGCAGAGAATACA
TCCTTTTTCAATAGGGGAGGTTTGGGTGGTCTTCCAGTCCAAAAGCGGATGTCACCCAGC
CCCTTCTCTATACAGCATTCCCCATTTACCTCTCCATTTGCTACACCAACCTTCTGCTTA
TCTCCCTTGATTGGTAGCCCAGGGAAGACAGCTTCTCCTTCTAAGGCTGGTTCAAAGGTA
CTACCTACGGCTAAACTGGAGAAAGTGAGTCCAACTGATTTGGATAAATTGTGGTCCTAT
GCGGGGAATCTTAGTGCCAGAAGACCTTCTAAGGATGCCCCTGAACGGGACTGA

Peptide Sequence

PEP ID

Solyc01g111937.1.1
PEP Infomation

Rop guanine nucleotide exchange factor, putative (AHRD V3.3 *** B9SR08_RICCO)
Sequence

MGSVSSEEGSDQQSERCGSYSLSADVSESESSSSSFSCRRYDAEGASSSMASSPLPCRRF
TAKSEFPTPVLPPFMFPAIGGKDVVLCNDKSEKRQADLSEIDLMKERFAKLLLGEDMSGG
GKGVSTALAISNAITNLSATIFGELWRLEPLALQKKAMWCREMEWLLCVSDSIVELVPSI
QQFPGGGTYEVMATRPRSDLYLNLPALKKLDAMLISILDGFRDTEFWYVDRGIVLAEGDD
CDSFPPGIGFGRPSVRQEEKWWLPCPKVPPKGLSEEARKRVQQCRDCTNQILKAALAINS
NVLAEVETPSAYIETLPKSGKACLGDIIYRYITADNFSPECLLDCLDLSSEHHTLEVANR
IEAAVHVWRLKDQKKHPHKRKSKGKSWGGKVKGLVADGGKNQYLAERAETLLHSLRLRFP
GLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAENT
SFFNRGGLGGLPVQKRMSPSPFSIQHSPFTSPFATPTFCLSPLIGSPGKTASPSKAGSKV
LPTAKLEKVSPTDLDKLWSYAGNLSARRPSKDAPERD*

Transcript Sequence

Transcript ID

Solyc01g111937.1.1
Transcript Infomation

Rop guanine nucleotide exchange factor, putative (AHRD V3.3 *** B9SR08_RICCO)
Sequence

TAAATTGAGACGAAAAAATAATTAATCAAAAAATTTGATAAGGTCAAAATAAATAATATT
ATGTCATGAGTATTATTTATATTTTAAAACTCATTCTTATAAATTTCACACCATATGTTA
TTTTCAAAAACATGAGTATGATTTTTCCCCAAGTCATCAAAATATACTCGTATGATATGC
GTTAAATTTTCCGTAAATCATCAAAATCCCAGTGGCAAACTGCAAAGGCAAATGCTCCCA
AACGAAGAAAAGGACCAAGTCGGGTAGTAGGTATCTTTTTGTCGTCAACTCCTCAACTAA
CGCCGTTCTTTTTCACCCAACAGACGCCCTTCAAACTAACGCCGTCTAATCGTACGGTAA
AATTTCCCACGCACCACTCTTTTGTCACAGTATTTTTTTTTTTGAGAGAGAAACAGCTAC
TGTAATAGTAGTACTGTGTGAACTGCGCTTTGGTTTGCTTTATCTTCTTTCTGCTTTTTC
ACCCTCCACCATTTCCTCTTCTTTCTCCTTCACAGCCATATCTGATAAGCTCTGTCTCTC
CCATTGTCGCCATTTGTTTTACCCTTTTATTTGCAATCATTATGAAGCTCATTTGCATCT
AGGATCTTCTTATTTACTACTTTTACTAAAGCATTTTCGAGTGCTTAACGATGGGGAGTG
TATCATCTGAAGAAGGTTCTGATCAGCAGAGTGAGAGATGTGGAAGCTACAGTTTAAGTG
CTGATGTCAGTGAGTCTGAAAGTTCTTCAAGCAGTTTCTCTTGTCGGCGCTATGATGCTG
AAGGCGCATCCAGTTCTATGGCCTCTTCGCCGCTCCCTTGCCGGAGATTCACTGCCAAAT
CCGAGTTTCCCACACCAGTGCTACCTCCATTTATGTTCCCGGCGATTGGCGGGAAAGATG
TGGTGCTCTGCAATGACAAGTCTGAGAAACGCCAGGCAGATTTATCTGAAATTGATCTGA
TGAAGGAGAGATTTGCCAAGCTGCTTCTTGGTGAGGACATGTCTGGAGGGGGTAAAGGGG
TTTCTACGGCACTTGCAATCTCAAATGCTATCACAAATCTTTCTGCTACTATATTTGGAG
AACTATGGAGGTTGGAGCCACTGGCCCTACAAAAGAAGGCAATGTGGTGTAGGGAGATGG
AGTGGCTGCTATGTGTTAGTGACTCTATTGTGGAGCTTGTGCCTTCCATTCAACAATTCC
CTGGAGGAGGCACATATGAAGTAATGGCAACAAGACCACGTTCTGATTTATACTTGAACC
TGCCTGCTCTAAAGAAACTTGATGCTATGTTGATTAGCATTCTCGATGGATTTCGTGACA
CAGAGTTTTGGTATGTGGATCGAGGGATAGTTTTAGCTGAAGGAGATGACTGTGACTCTT
TTCCTCCTGGAATAGGGTTTGGTAGGCCCTCAGTTCGACAGGAAGAGAAATGGTGGTTGC
CTTGCCCTAAAGTCCCCCCAAAAGGGTTGTCTGAAGAAGCTAGGAAGAGAGTGCAACAGT
GTAGGGATTGCACTAACCAGATACTGAAGGCAGCCTTGGCAATCAACAGTAATGTGCTCG
CTGAAGTGGAGACTCCAAGTGCCTATATTGAAACTTTGCCCAAGAGTGGAAAAGCATGTC
TAGGTGATATCATCTATCGTTACATCACTGCTGACAATTTCTCACCTGAATGTCTTCTTG
ATTGCCTGGACTTGTCATCAGAGCACCATACGCTGGAAGTTGCAAATAGAATTGAGGCTG
CTGTGCATGTTTGGAGACTGAAGGACCAGAAGAAACATCCACATAAAAGAAAATCTAAAG
GCAAGTCATGGGGAGGGAAGGTCAAGGGCCTTGTTGCAGATGGTGGTAAGAATCAATATC
TGGCAGAACGAGCAGAAACTCTCTTGCATAGTCTCAGGCTTCGCTTCCCTGGTCTTCCTC
AAACTGCACTTGACATGAACAAAATACAGTATAACAAGGATGTTGGACAGTCAATTCTTG
AGAGTTACTCAAGGGTCATGGAGAGCTTGGCATTTAACATTATGGCGAGGATTGACGATG
TGTTATTCGTGGATGATGCCACAAAACGATGTGCTGCAGCAGAGAATACATCCTTTTTCA
ATAGGGGAGGTTTGGGTGGTCTTCCAGTCCAAAAGCGGATGTCACCCAGCCCCTTCTCTA
TACAGCATTCCCCATTTACCTCTCCATTTGCTACACCAACCTTCTGCTTATCTCCCTTGA
TTGGTAGCCCAGGGAAGACAGCTTCTCCTTCTAAGGCTGGTTCAAAGGTACTACCTACGG
CTAAACTGGAGAAAGTGAGTCCAACTGATTTGGATAAATTGTGGTCCTATGCGGGGAATC
TTAGTGCCAGAAGACCTTCTAAGGATGCCCCTGAACGGGACTGA