Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g111520.3.1
CDS Infomation

Calcium-dependent lipid-binding (CaLB domain) family protein (AHRD V3.3 *** AT1G20080.5)
Sequence

ATGGGTTTTGTGAGTACGATTTTGGGTTTTTGTGGATTTGGAGTTGGGGTTTCATGTGGA
TTGACGATCGGTTACTATCTCTTCATCTATTTCCAACCCTGTGATGTTAAGGACCCTGTT
ATTCGTCCATTGGTTGAGCGAGATTCTAAAAGCTTGCAGCAGTTGCTGTCTGAAATTCCT
CTCTGGGTCAAATGTCCAGATTATGACCGTGTGGACTGGCTCAACAAATTTATCGAGTAT
ATGTGGCCTTACCTGGACAAGGCAATTTGCAGGACTGCAAAAGATATTGCGGCACCAATT
ATTGCTGAACAAATACCGAAGTATAAAATTGATTCTGTTGAATTTGAGACACTAACTTTG
GGGTCCTTACCCCCTACTTTCCAGGGGATGAAGGTCTATGTTACTGAAGAAAAAGAATTG
ATCATGGAACCATCAATAAAGTGGGCTGGAAATCCTAATGTTACCGTTGCGGTCAAAGCA
TTCGGATTGAAAGCAACTGTTCAGGTTGTGGACTTGCAGGTTTTTGCAGCTCCACGTATT
ACTCTGAAGCCTCTGGTTCCAAGCTTTCCATGTTTTGCCAATATCTTTGTGTCCCTCATG
GAAAAGCCACATGTTGACTTTGGATTGAAGCTTTTGGGGGCTGATCTTATGTCCATCCCT
GGCTTGTACAGGTTTGTCCAGGAGACTATTAAAGATCAGGTTGCTAACATGTATCTTTGG
CCTAAATCTCTAGAAGTGCAGATATTGGATCCATCCAAAGCAATGAAAAAACCTGTTGGG
GTCCTGCATGTGAAGATTCTGAGGGCTATGAATCTGAAAAAAAAAGATCTACTGGGTGCA
TCTGATCCTTACGTAAAACTTAAGCTCACTGAGTCAAAACTTCCTTCAAAGAAAACCCCT
GTAAGGCATAAGAATTTAAACCCAGAGTGGAATGAGGAATTTAATATGGTTGTTAAAGAT
CCAGAATCGCAAGCATTGGAGCTCTCTGTTTATGATTGGGAGAAGATTGGCAAGCATGAT
AAGATGGGCATGAACGTTATTCCACTGAAAGATTTGACTCCTGATGAAACAAAAACGATG
ACACTGAGTCTCCTAAAGAACATGGATGCGAATGATTCTCAAAATGATAAGGACCGTGGT
CAGATCATGGTGGAATTAACCTACAAACCATTTAAGGAGGATGAGTTGCCAAAAGATTTT
GAAGATAATGATGCAGCACATAAGGTTCCAGAAGGAACACCACCAGGGGGAGGCGTCCTT
ATGATTATTGTCCACGAAGCTCAAGATGTTGAAGGAAAGCACCATACTAATCCATATGTC
AAGATTCTTTTCAAAGGAGAGGAGAGAAAAACTAAGCAAGTCAAGAAGAACAGGGATCCA
AGATGGGAAGAGGAGTTTACTTTTGTGTTGGAGGAGCCTCCTGTGAATGATAGGGTGCAT
ATGGAAGTTGTCAGCACCTCTACAAGGATTGGCCTATTGCATCCTAAGGAGACATTGGGT
TATGTTGATATAAATCTTTCCGATGTTGTTAGCAACAAAAGGATCAATGAGAAGTACCAC
CTCATTGATTCAAAGAACGGTCGCCTTCAAGTCGAGCTGCAATGGCGAACCGCATCTTGA

Peptide Sequence

PEP ID

Solyc01g111520.3.1
PEP Infomation

Calcium-dependent lipid-binding (CaLB domain) family protein (AHRD V3.3 *** AT1G20080.5)
Sequence

MGFVSTILGFCGFGVGVSCGLTIGYYLFIYFQPCDVKDPVIRPLVERDSKSLQQLLSEIP
LWVKCPDYDRVDWLNKFIEYMWPYLDKAICRTAKDIAAPIIAEQIPKYKIDSVEFETLTL
GSLPPTFQGMKVYVTEEKELIMEPSIKWAGNPNVTVAVKAFGLKATVQVVDLQVFAAPRI
TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADLMSIPGLYRFVQETIKDQVANMYLW
PKSLEVQILDPSKAMKKPVGVLHVKILRAMNLKKKDLLGASDPYVKLKLTESKLPSKKTP
VRHKNLNPEWNEEFNMVVKDPESQALELSVYDWEKIGKHDKMGMNVIPLKDLTPDETKTM
TLSLLKNMDANDSQNDKDRGQIMVELTYKPFKEDELPKDFEDNDAAHKVPEGTPPGGGVL
MIIVHEAQDVEGKHHTNPYVKILFKGEERKTKQVKKNRDPRWEEEFTFVLEEPPVNDRVH
MEVVSTSTRIGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGRLQVELQWRTAS*

Transcript Sequence

Transcript ID

Solyc01g111520.3.1
Transcript Infomation

Calcium-dependent lipid-binding (CaLB domain) family protein (AHRD V3.3 *** AT1G20080.5)
Sequence

GAACATGCGAGGACACATTCGTCCTTTTCCTTTAAGTCGAATGGTTTGTTCTAATCATAA
TGGCATTTGGTTAAGATTACGAGAAAAGGTATATCAGATTCACAAATATGATTTTCTTGA
GTTGAAGAGTTCAAGGAGAGTAAAGGTACTCTGAGATGGGTTTTGTGAGTACGATTTTGG
GTTTTTGTGGATTTGGAGTTGGGGTTTCATGTGGATTGACGATCGGTTACTATCTCTTCA
TCTATTTCCAACCCTGTGATGTTAAGGACCCTGTTATTCGTCCATTGGTTGAGCGAGATT
CTAAAAGCTTGCAGCAGTTGCTGTCTGAAATTCCTCTCTGGGTCAAATGTCCAGATTATG
ACCGTGTGGACTGGCTCAACAAATTTATCGAGTATATGTGGCCTTACCTGGACAAGGCAA
TTTGCAGGACTGCAAAAGATATTGCGGCACCAATTATTGCTGAACAAATACCGAAGTATA
AAATTGATTCTGTTGAATTTGAGACACTAACTTTGGGGTCCTTACCCCCTACTTTCCAGG
GGATGAAGGTCTATGTTACTGAAGAAAAAGAATTGATCATGGAACCATCAATAAAGTGGG
CTGGAAATCCTAATGTTACCGTTGCGGTCAAAGCATTCGGATTGAAAGCAACTGTTCAGG
TTGTGGACTTGCAGGTTTTTGCAGCTCCACGTATTACTCTGAAGCCTCTGGTTCCAAGCT
TTCCATGTTTTGCCAATATCTTTGTGTCCCTCATGGAAAAGCCACATGTTGACTTTGGAT
TGAAGCTTTTGGGGGCTGATCTTATGTCCATCCCTGGCTTGTACAGGTTTGTCCAGGAGA
CTATTAAAGATCAGGTTGCTAACATGTATCTTTGGCCTAAATCTCTAGAAGTGCAGATAT
TGGATCCATCCAAAGCAATGAAAAAACCTGTTGGGGTCCTGCATGTGAAGATTCTGAGGG
CTATGAATCTGAAAAAAAAAGATCTACTGGGTGCATCTGATCCTTACGTAAAACTTAAGC
TCACTGAGTCAAAACTTCCTTCAAAGAAAACCCCTGTAAGGCATAAGAATTTAAACCCAG
AGTGGAATGAGGAATTTAATATGGTTGTTAAAGATCCAGAATCGCAAGCATTGGAGCTCT
CTGTTTATGATTGGGAGAAGATTGGCAAGCATGATAAGATGGGCATGAACGTTATTCCAC
TGAAAGATTTGACTCCTGATGAAACAAAAACGATGACACTGAGTCTCCTAAAGAACATGG
ATGCGAATGATTCTCAAAATGATAAGGACCGTGGTCAGATCATGGTGGAATTAACCTACA
AACCATTTAAGGAGGATGAGTTGCCAAAAGATTTTGAAGATAATGATGCAGCACATAAGG
TTCCAGAAGGAACACCACCAGGGGGAGGCGTCCTTATGATTATTGTCCACGAAGCTCAAG
ATGTTGAAGGAAAGCACCATACTAATCCATATGTCAAGATTCTTTTCAAAGGAGAGGAGA
GAAAAACTAAGCAAGTCAAGAAGAACAGGGATCCAAGATGGGAAGAGGAGTTTACTTTTG
TGTTGGAGGAGCCTCCTGTGAATGATAGGGTGCATATGGAAGTTGTCAGCACCTCTACAA
GGATTGGCCTATTGCATCCTAAGGAGACATTGGGTTATGTTGATATAAATCTTTCCGATG
TTGTTAGCAACAAAAGGATCAATGAGAAGTACCACCTCATTGATTCAAAGAACGGTCGCC
TTCAAGTCGAGCTGCAATGGCGAACCGCATCTTGAGCTAATTGCAACTTCCATGCCTGAA
CTTGTTTTCTTTTTCTTCTGTTTCTTTTTTTTTGTTCTCTTGATTCTTCTTTTCATGATG
GATGTTTGAGGAGTGAAGACATAAATATTTCTTTTTTCAGTTCTTAAGCTGGAATAATCT
CTGCAATTGTTTGTACATTAGTACATAACAACCTTGTTTGATTAAAATGTTTTTTTTTTG
GTTGTTGCTCATCTGTATTTTGTTAGAAGGGCTGTGTCATAGAATCTGTTCCCCTGCGCA
GCATGAAATACCGCTTAATCGTGTATGTTTGTGGCCGGTGCCGTTGTGTATAGAGTATAT
GGGGTTG