Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g110290.3.1
CDS Infomation

Squalene synthase (AHRD V3.3 *** D0VFU8_SOLLC)
Sequence

ATGGGAACATTGAGGGCAATTCTGAAGAATCCAGATGATTTGTATCCATTGATAAAGCTC
AAACTAGCGGCTAGACATGCGGAGAAGCAGATCCCGCCGGAGCCACATTGGGGCTTCTGT
TACTTAATGCTTCAAAAGGTCTCTCGTAGTTTTGCTCTCGTCATTCAACAGCTTCCTGTC
GAGCTTCGTGATGCTGTATGCATATTCTATTTGGTCCTTCGAGCACTTGACACTGTTGAG
GATGATACCAGCATACCCACCGATGTTAAAGTACCAATTTTGATCTCTTTTCATCAGCAT
GTTTATGATCGCGAATGGCACTTTGCATGTGGTACGAAGGAGTACAAGGTTCTCATGGAC
CAGTTCCATCATGTTTCGACTGCTTTTCTGGAACTTGGAAAACTTTATCAGCAGGCAATT
GAGGACATTACCATGAGGATGGGTGCAGGAATGGCAAAATTTATATGCAAGGAGGTGGAA
ACAACTGATGATTATGACGAATACTGTCACTATGTAGCTGGGCTTGTTGGGCTAGGATTG
TCAAAACTGTTCCACGCCTCTGGGAAAGAAGATCTGGCTTCAGATTCTCTCTCCAACTCC
ATGGGTTTATTTCTTCAGAAAACAAACATTATCAGAGATTATTTGGAAGATATAAATGAA
GTACCCAAGTGCCGTATGTTCTGGCCCCGTGAGATTTGGAGTAAATATGTTAACAAACTT
GAGGACTTGAAGTACGAGGAGAACTCGGTTAAGGCAGTGCAATGTCTCAATGACATGGTC
ACCAATGCATTGTCACATGTAGAAGATTGTTTGACTTACATGTTCAATTTGCATGATCCT
GCCATCTTTCGATTCTGTGCCATTCCACAGGTCATGGCAATTGGGACATTAGCTATGTGC
TACGACAACATTGAAGTCTTCAGAGGAGTGGTAAAAATGAGGCGTGGTCTTACTGCTAAG
GTCATTGACCGGACCAAGACTATGGCAGATGTATATGGTGCTTTTTTTGACTTTTCTTGT
ATGCTGAAATCCAAGGTTAATAATAACGATCCAAATGCAACAAAAACTTTGAAGAGGCTT
GATGCCATCCTGAAAACTTGCAGAGACTCGGGAACCTTGAACAAAAGAAAATCTTACATA
ATCAGGAACGAGCCTAATTACAGTCCAGTTCTGATTGTTGTCATCTTCATCATACTGGCT
ATTATTCTTGCACAACTTTCTGGCAGCCGGTCTTAG

Peptide Sequence

PEP ID

Solyc01g110290.3.1
PEP Infomation

Squalene synthase (AHRD V3.3 *** D0VFU8_SOLLC)
Sequence

MGTLRAILKNPDDLYPLIKLKLAARHAEKQIPPEPHWGFCYLMLQKVSRSFALVIQQLPV
ELRDAVCIFYLVLRALDTVEDDTSIPTDVKVPILISFHQHVYDREWHFACGTKEYKVLMD
QFHHVSTAFLELGKLYQQAIEDITMRMGAGMAKFICKEVETTDDYDEYCHYVAGLVGLGL
SKLFHASGKEDLASDSLSNSMGLFLQKTNIIRDYLEDINEVPKCRMFWPREIWSKYVNKL
EDLKYEENSVKAVQCLNDMVTNALSHVEDCLTYMFNLHDPAIFRFCAIPQVMAIGTLAMC
YDNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFSCMLKSKVNNNDPNATKTLKRL
DAILKTCRDSGTLNKRKSYIIRNEPNYSPVLIVVIFIILAIILAQLSGSRS*

Transcript Sequence

Transcript ID

Solyc01g110290.3.1
Transcript Infomation

Squalene synthase (AHRD V3.3 *** D0VFU8_SOLLC)
Sequence

TTATACATAGGTATAGTCGTTTCCACAAATTCATTATTATTCAATAACTTCTACATATAC
TGTCATTTTGCAAACGCTCTCCTCTACCGAACACTCCCACGCCATTCCCTCTCTCCCTTT
CGCTTTCTGGATTTGTTTTCTTCATACATCAACACGTATTTGTGTGTGGTTTGATTGTGG
ATCGGGACAGTTTTTGAAATTTGTTGAGAAGAATGGGAACATTGAGGGCAATTCTGAAGA
ATCCAGATGATTTGTATCCATTGATAAAGCTCAAACTAGCGGCTAGACATGCGGAGAAGC
AGATCCCGCCGGAGCCACATTGGGGCTTCTGTTACTTAATGCTTCAAAAGGTCTCTCGTA
GTTTTGCTCTCGTCATTCAACAGCTTCCTGTCGAGCTTCGTGATGCTGTATGCATATTCT
ATTTGGTCCTTCGAGCACTTGACACTGTTGAGGATGATACCAGCATACCCACCGATGTTA
AAGTACCAATTTTGATCTCTTTTCATCAGCATGTTTATGATCGCGAATGGCACTTTGCAT
GTGGTACGAAGGAGTACAAGGTTCTCATGGACCAGTTCCATCATGTTTCGACTGCTTTTC
TGGAACTTGGAAAACTTTATCAGCAGGCAATTGAGGACATTACCATGAGGATGGGTGCAG
GAATGGCAAAATTTATATGCAAGGAGGTGGAAACAACTGATGATTATGACGAATACTGTC
ACTATGTAGCTGGGCTTGTTGGGCTAGGATTGTCAAAACTGTTCCACGCCTCTGGGAAAG
AAGATCTGGCTTCAGATTCTCTCTCCAACTCCATGGGTTTATTTCTTCAGAAAACAAACA
TTATCAGAGATTATTTGGAAGATATAAATGAAGTACCCAAGTGCCGTATGTTCTGGCCCC
GTGAGATTTGGAGTAAATATGTTAACAAACTTGAGGACTTGAAGTACGAGGAGAACTCGG
TTAAGGCAGTGCAATGTCTCAATGACATGGTCACCAATGCATTGTCACATGTAGAAGATT
GTTTGACTTACATGTTCAATTTGCATGATCCTGCCATCTTTCGATTCTGTGCCATTCCAC
AGGTCATGGCAATTGGGACATTAGCTATGTGCTACGACAACATTGAAGTCTTCAGAGGAG
TGGTAAAAATGAGGCGTGGTCTTACTGCTAAGGTCATTGACCGGACCAAGACTATGGCAG
ATGTATATGGTGCTTTTTTTGACTTTTCTTGTATGCTGAAATCCAAGGTTAATAATAACG
ATCCAAATGCAACAAAAACTTTGAAGAGGCTTGATGCCATCCTGAAAACTTGCAGAGACT
CGGGAACCTTGAACAAAAGAAAATCTTACATAATCAGGAACGAGCCTAATTACAGTCCAG
TTCTGATTGTTGTCATCTTCATCATACTGGCTATTATTCTTGCACAACTTTCTGGCAGCC
GGTCTTAGACCATTTATTGGTCTACAAAAATGAAGTATGGTCAAGGAAGACAGCACAAAC
TCTTGGCCAATTATGTACTGCTAATTGTTATGTTTGTATTACTATGTTCATTAAGTTAAT
AGTTGCATCTCCAACCGGACCAGATAATTACGAAAGCCTATTTATGGCAGTTAGGTGGGT
ATGTATTTGTTTACAAGCTAGGAAAGCAAATTCCAAGTGTTGTAGAGACGTTTTTCCGTA
ATGCACATTTCATTTTAATACCATGTCCAATTTTGTGGTAAATTGACGTGATTACAGAAA
GCCGTTGTATTCGGACCAACACATTTTCAGAGGTTTCTCCAGAACTGGAAGCAAATTGCA
GTTAAGTGAAAATGAAATGAAGAGTGACGCGTCTCTTAGTGGGTGCAAGTGCAATATCCC
TTTAAAGGAAATTTTTTTTGTAAATACACGCAAGGAAAATACTTCTACTTGGTGAAGAGA
ACAATTCATATTTGTAGTACTCGAGGACCTTTCCTGGAACGTTACTGATATCCTTATCTT
CATCGGCAGTCTGCAAATGATAATTTTCCATTTCTATTAAAGAGGACGTGGACACGGCCC
AGTGGTTAATCAAGTGAAAATATGACTGAGGCTTAAAGGTTGAATAAAAACACCATGTGA
TTACTTCCTATCTATCTCCATAGTGAGTATAGTTAACCCATGTCAGTGGAAGGTAGCTAG
TACTGGTGGAATATTGAAGTGTAGACAAGCTGATACGACTTACCTGTCATAGGGAAAATT
CTTATCGCACGCGGAAGTGAATTAAGGGTTGAAA