Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g109740.3.1
CDS Infomation

Pectinesterase (AHRD V3.3 *** K4B3I7_SOLLC)
Sequence

ATGGATGCTACTTCATTCATAATTCAATTTCATCTTATATTAATTCTACTCATTTGTTGT
AATACGTCAACTAATTTAGCCATGGCTGCAAACAACTCTAGTACAAATTTTTCCACAGCC
ATTCTAATTAGAGTGGACCAATCAGGCCAGGGAGATTTCAAAAAAATTCAAGATGCTATT
GATGCTGTTCCATCGAATAATACTGAATTATTCTTCATTTGGGTTAAGCCAGGGACTTAC
AGAGAGAAGATTGTGGTACCTGCTGATAAGCCATTCATCACGTTGAGTGGAACAGAGGCT
TCTAACACAATAATTACATCTAGTGAAGGTGGAGATATTACTGAATCTCCTACAGTCACT
GTATTAGCCTCCGATTTTGTTGCAAGATATTTAACAATACAGAATTTATTCGGAACGAGT
GGCAAAGCCGTGGCACTTAAGGTTAAAGGAGATAGAGGTGCATTCTATAGTTGTAGAATT
CAATCGTATCAAGACACTTTGTTAGACGATAGTGGTAGGCATTATTACAACAATTGTTAC
ATTGAAGGGGCCGTTGATTTTATTTTCGGTAGCGCAGCTTCTCTCTATGAAAGGTGTCAT
ATTCATTCAGTTGCAGCAGGGGCAATCACAGCTCAAGGCAGAGAGACCCCTTTAGAAAAT
TCAGGATTTACATTTTTAGGTTGCAAGATAACAGGTACAGGAGGGAACACTTCACTAGGA
AGACCATGGGGTTCATATTCTAGGGTTGTTTTTGCCTACACATTTATGGCTAATATCATA
CAGCCAGAGGGATGGAATGACTGGGGAGATTCTACCAAGCAAAGCACTTCGTACTATGGT
GAATACAAGTGTTATGGACCGGGTGCTAATAGATCAAAAAGGGTGGTTTGGTCACGTAGC
TTATCGAACGAGGACGCCGCGCCATTTCTGACCAAGAATATGATTGGCGGGCGAAGTTGG
TTAAGGCCCACCCCGACCCATTTCAAAAGATCAGGCTCAACAAATATTGTTACTTCTGCT
GGAGAAAATTGA

Peptide Sequence

PEP ID

Solyc01g109740.3.1
PEP Infomation

Pectinesterase (AHRD V3.3 *** K4B3I7_SOLLC)
Sequence

MDATSFIIQFHLILILLICCNTSTNLAMAANNSSTNFSTAILIRVDQSGQGDFKKIQDAI
DAVPSNNTELFFIWVKPGTYREKIVVPADKPFITLSGTEASNTIITSSEGGDITESPTVT
VLASDFVARYLTIQNLFGTSGKAVALKVKGDRGAFYSCRIQSYQDTLLDDSGRHYYNNCY
IEGAVDFIFGSAASLYERCHIHSVAAGAITAQGRETPLENSGFTFLGCKITGTGGNTSLG
RPWGSYSRVVFAYTFMANIIQPEGWNDWGDSTKQSTSYYGEYKCYGPGANRSKRVVWSRS
LSNEDAAPFLTKNMIGGRSWLRPTPTHFKRSGSTNIVTSAGEN*

Transcript Sequence

Transcript ID

Solyc01g109740.3.1
Transcript Infomation

Pectinesterase (AHRD V3.3 *** K4B3I7_SOLLC)
Sequence

ATTCCATGATTAATGTGAATGGTGAACAACTTAGACCTTAATCAATCTGCAAATTAAAAA
GTAAGCCACCAATACTTTGACACTAATTCTCGGCTGCCGGCGTTCATTAAGGAAGAAACC
TTCTTTATAAAGCTTAACAATGTTTCTGCTTTTTAATCACCTTTACTTTACTTGATTAAT
TTACTATTCTCTGCACCCCCATCGAGACCGCTGTTTAATATTAATTGCACATGGATGCTA
CTTCATTCATAATTCAATTTCATCTTATATTAATTCTACTCATTTGTTGTAATACGTCAA
CTAATTTAGCCATGGCTGCAAACAACTCTAGTACAAATTTTTCCACAGCCATTCTAATTA
GAGTGGACCAATCAGGCCAGGGAGATTTCAAAAAAATTCAAGATGCTATTGATGCTGTTC
CATCGAATAATACTGAATTATTCTTCATTTGGGTTAAGCCAGGGACTTACAGAGAGAAGA
TTGTGGTACCTGCTGATAAGCCATTCATCACGTTGAGTGGAACAGAGGCTTCTAACACAA
TAATTACATCTAGTGAAGGTGGAGATATTACTGAATCTCCTACAGTCACTGTATTAGCCT
CCGATTTTGTTGCAAGATATTTAACAATACAGAATTTATTCGGAACGAGTGGCAAAGCCG
TGGCACTTAAGGTTAAAGGAGATAGAGGTGCATTCTATAGTTGTAGAATTCAATCGTATC
AAGACACTTTGTTAGACGATAGTGGTAGGCATTATTACAACAATTGTTACATTGAAGGGG
CCGTTGATTTTATTTTCGGTAGCGCAGCTTCTCTCTATGAAAGGTGTCATATTCATTCAG
TTGCAGCAGGGGCAATCACAGCTCAAGGCAGAGAGACCCCTTTAGAAAATTCAGGATTTA
CATTTTTAGGTTGCAAGATAACAGGTACAGGAGGGAACACTTCACTAGGAAGACCATGGG
GTTCATATTCTAGGGTTGTTTTTGCCTACACATTTATGGCTAATATCATACAGCCAGAGG
GATGGAATGACTGGGGAGATTCTACCAAGCAAAGCACTTCGTACTATGGTGAATACAAGT
GTTATGGACCGGGTGCTAATAGATCAAAAAGGGTGGTTTGGTCACGTAGCTTATCGAACG
AGGACGCCGCGCCATTTCTGACCAAGAATATGATTGGCGGGCGAAGTTGGTTAAGGCCCA
CCCCGACCCATTTCAAAAGATCAGGCTCAACAAATATTGTTACTTCTGCTGGAGAAAATT
GAAATCCAAGTTATTTTAATTTACCGCCACTAATTAATTATTCAATTTGTAGTTTATTGA
GATTGTATTAGAAATATTATAAGCAAATGAAACCAATGACATAACTGAAAAAAAAACTAT
TTTGTTATCCAGGCAGGTGCTACTATTGTAAGAAGAAAAATCTTGATCAAATTCAATATA
CTATACTCCAATCTCCAAAAGTGATATATCATTTTCAATGTATTTTACATAGAAGCAGTT
GATGAGCATAAATTCATCAGATAGCCGTATTATGTCTATAAGAGAAAACAGATATCTGTC
CATCGCCATCGGAGAAGAAACAGAAGCATAATGAAAAGAAGAAACAGACCAAAAAGAAGC
TTATAGAGAGCCCCAAAGACCCTGAATTCAAAATAGAATTGCAATAAGGCATATCAACAA
GAAAACCAGCACCAACGCGCCAATCCAACAAGCCCAAGTCCTCGTTCTCTTCATTCGATT
AGCACGATCTAACTCCTTCATCCCACCATTCACATATCCACCAGCATTAACCACATTTTG
CTCAATATTGTTCATTTGATCACCTTGTGTCTCAACCATAACAGCCATGTCAAGAAACAC
TTGGTGCAGCTCAACCAAGCTTTTCTGTATCTCTTTCACAGCTTCATGTCTATCCTGGTT
CTCCACCACCCCCTTTTCAATAACCCTTTCTTGCATCATCTTTTCAATCGCCTCCTCGCT
CGGTTCCTTCCCGTTAGCATTACTATACTGTTTTCTTAAGCCTTCTTTGTGTTCTGCTAC
AATGTTTTCCCTTAAACACTGAAAATCATTCATCATATCCCTCAGTTTAATTCTCAAACC
ATTAGTCACTGAAATCCTCGTTCGATCAACAGGACTTCCTGACACGCCACGATTGTCAAG
ATTGGATTTATCTAGCAATTCAAGTCTTGTTTTGATCATTTTCGCCTTTCTAAGAACAGT
AATAATGTCAGAGTTAATCTGATCTCTATGTCCTTGAAGAATTTTGGCACTCGGGGCTGA
TTTGGTTTTTCGATTAAGGTCTTGAAGATTGACAAGAAGATTGTTAATCTCTTCCATATC
AGACTTAATTACAGCAACTTCTTCAAAGAATTTTGAGAGGTTTCTTTCATCAGTCGGGTC
GAGTTGACCCATCTCAATATCAGGCCCTGCTTCAACATCCATCATAGCCTGCTTCT