Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g109380.3.1
CDS Infomation

UPF0496 protein (AHRD V3.3 *** A0A061E8F5_THECC)
Sequence

ATGGGAGGACACATGAGCAAAAAGCCTGGTGAAACTTCAGCTGCAATCGACAATCTGCAG
TATAAAATTGAGCTGAATTCATATGAAGCTGCGTGCAGGATTGACACAGACTTACAATCC
TTTGATACAAATCTACAAGCTCGAACTAGTCATGTTATCAATACCCTTGCTGATGGGGTT
GAAGTTAGAGCACTTTCGTTTGATTCCTTGAGGGAAGTAACTGGATGCCTTTTGGAAATG
AATCAGGAAGTTGTGAAGGTGATATTGGATTGCAAGAAAGACATATGGAAGAATCAAGAA
TTGTTTGAGCTAGTTGAGGAATATTTTGACAATAGCCTCAAAACTCTGGATTTCCTTGCT
GCTTTAGAGAAATGTCTAAAACGTGCTCGGGATAGCCAGTTGCTGATTCTTGTAGCACTT
CAACAATTTGAAGAGGAAAGCGGGGTTGAAGGGAATAGATATACCAAGACTTTAGAGGAA
CTGAAAAATTTCAGAGCTGCAGGGGATCCTTTCACAGAGGAATTTTTCCAAATTTTCCAG
TCTGTTTATACACAGCAAATGCTGATGCTTGAAAAGCTGCAGCTGAAAAAGAACAAGCTT
GATAAGAGGCTTAAGTACATCCATGCTTGGAGGAAAGTGTCAAACATTATATTTGTGGCT
ACATTTGCAGCTGTTTTGATTTGCTCAGTAGTGGCTGCTGCTATAGCTGCACCTCCGGTC
GCATCTGCTCTGGCTGCTGCAGCATCGATTCCGTTGGGCTCAATGGGCAAATGGATAGAT
TCCCTTCTCAAGAACTATGAAGATGCTGTCAAAGGGCAGAAAGAATTGGTCAATACAATG
CATGTAGGTACTTTTATCACAATTAAGGATTTGGACAGTATCAGGGTGCTTATAGATCGA
TTGGAAATCGAGATTGAATCACTCTTGAAGAAAGTTGAGTTTGCTATTGATGAAGATGCT
GTTAAGGTTGCTATAGAAGAGATCAGGAAAAAGCTTGATGTCTTTATGAAGAATGTTGAA
GATCTTGGAATGCAAGCTGATGTGTGTAGCAGGGATATTCGTCGAGCCAGGACTGTTATC
TTACAAAGAATCATCAAACCCCCAAACCATTGA

Peptide Sequence

PEP ID

Solyc01g109380.3.1
PEP Infomation

UPF0496 protein (AHRD V3.3 *** A0A061E8F5_THECC)
Sequence

MGGHMSKKPGETSAAIDNLQYKIELNSYEAACRIDTDLQSFDTNLQARTSHVINTLADGV
EVRALSFDSLREVTGCLLEMNQEVVKVILDCKKDIWKNQELFELVEEYFDNSLKTLDFLA
ALEKCLKRARDSQLLILVALQQFEEESGVEGNRYTKTLEELKNFRAAGDPFTEEFFQIFQ
SVYTQQMLMLEKLQLKKNKLDKRLKYIHAWRKVSNIIFVATFAAVLICSVVAAAIAAPPV
ASALAAAASIPLGSMGKWIDSLLKNYEDAVKGQKELVNTMHVGTFITIKDLDSIRVLIDR
LEIEIESLLKKVEFAIDEDAVKVAIEEIRKKLDVFMKNVEDLGMQADVCSRDIRRARTVI
LQRIIKPPNH*

Transcript Sequence

Transcript ID

Solyc01g109380.3.1
Transcript Infomation

UPF0496 protein (AHRD V3.3 *** A0A061E8F5_THECC)
Sequence

ATGGGAGGACACATGAGCAAAAAGCCTGGTGAAACTTCAGCTGCAATCGACAATCTGCAG
TATAAAATTGAGCTGAATTCATATGAAGCTGCGTGCAGGATTGACACAGACTTACAATCC
TTTGATACAAATCTACAAGCTCGAACTAGTCATGTTATCAATACCCTTGCTGATGGGGTT
GAAGTTAGAGCACTTTCGTTTGATTCCTTGAGGGAAGTAACTGGATGCCTTTTGGAAATG
AATCAGGAAGTTGTGAAGGTGATATTGGATTGCAAGAAAGACATATGGAAGAATCAAGAA
TTGTTTGAGCTAGTTGAGGAATATTTTGACAATAGCCTCAAAACTCTGGATTTCCTTGCT
GCTTTAGAGAAATGTCTAAAACGTGCTCGGGATAGCCAGTTGCTGATTCTTGTAGCACTT
CAACAATTTGAAGAGGAAAGCGGGGTTGAAGGGAATAGATATACCAAGACTTTAGAGGAA
CTGAAAAATTTCAGAGCTGCAGGGGATCCTTTCACAGAGGAATTTTTCCAAATTTTCCAG
TCTGTTTATACACAGCAAATGCTGATGCTTGAAAAGCTGCAGCTGAAAAAGAACAAGCTT
GATAAGAGGCTTAAGTACATCCATGCTTGGAGGAAAGTGTCAAACATTATATTTGTGGCT
ACATTTGCAGCTGTTTTGATTTGCTCAGTAGTGGCTGCTGCTATAGCTGCACCTCCGGTC
GCATCTGCTCTGGCTGCTGCAGCATCGATTCCGTTGGGCTCAATGGGCAAATGGATAGAT
TCCCTTCTCAAGAACTATGAAGATGCTGTCAAAGGGCAGAAAGAATTGGTCAATACAATG
CATGTAGGTACTTTTATCACAATTAAGGATTTGGACAGTATCAGGGTGCTTATAGATCGA
TTGGAAATCGAGATTGAATCACTCTTGAAGAAAGTTGAGTTTGCTATTGATGAAGATGCT
GTTAAGGTTGCTATAGAAGAGATCAGGAAAAAGCTTGATGTCTTTATGAAGAATGTTGAA
GATCTTGGAATGCAAGCTGATGTGTGTAGCAGGGATATTCGTCGAGCCAGGACTGTTATC
TTACAAAGAATCATCAAACCCCCAAACCATTGA