Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g109280.3.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT2G16090.4)
Sequence

ATGGAGGATTACGGGAGCAGTGACGAAGATACATATTCGTCTGATCAAGAATCTTATGAC
GGACTCGAGAATGAAGAGACTGATTCTCAATGGGGCTCTTCCACGGGAAACTCCTGCAAG
GTAATCACAAGGGAGTCTCTTTTGGTGGCACAGAGAGAAGATTTGCGGAGAGTGATGGAC
TTGCTCTCACTAAGAGAACACCATGCAAGAACCTTGCTCATTCACTATCGTTGGGATGTC
GAGAGGTTGTTTGCGATTCTTGTTGAAAAGGGAAAGACTTGCTTATTTGCTGAAGCAGGG
GTAACTATTCTTGAAGAAATTGATGTTGACTCGTCTGTGTCTTCTTCGACTATGATGTGC
GGCATATGCATGGAAGAGGTAGCAGGGAGTGAAGTCACGAAAATGGACTGTGGCCACTGC
TTCTGCAATGACTGTTGGACAGAGCATTTTATTGTAAAAATAAAGGAGGGTCAGAGTAAG
AGAATAAGGTGCATGGCTCATAAATGCTTTGCTATCTGTGATGAAGCTGTTATCAGAAAG
CTAGTTAGTAAAAGGCATCCTGATTTGGCAGAGAAATTTGATCGGTTTCTCCTTGAATCA
TACATTGAGGACAATAAAATGGTGAAATGGTGTCCAAGTATCCCTCATTGTGGGAATGCT
ATTCGAGTAGAGACCGATGAGTTCTGTGAAGTAGAATGTTCATGTGGTTTACAGTTCTGT
TTCAGTTGCTTATCAGAAGCACATTCACCTTGTTCTTGCTGGATGTGGGAACTTTGGACC
AAGAAGTGCCGAGACGAATCCGAGACTGTTAACTGGATTACAGTTCACACTAAGCCTTGT
CCAAAGTGTCATAAGCCGGTCGAGAAGAATGGAGGTTGCAACTTAGTTAGCTGCATTTGT
GGGCAAGCATTTTGTTGGCTATGTGGTGGAGCTACTGGCCGAGATCATACTTGGTCAAGT
ATCGCTGGTCACAGCTGTGGTCGTTATAAGGAAGATCAGGAGAAGAAGTCTGAACGGGCT
AAGCGTGATCTCTATCGCTACATGCATTATCACAATCGTTATAAAGCTCATACGGATTCT
TTTACACAGGAGTCTCGTCTGAGGGAGACCATAAAAGAAAAGGTAGCAAATTTAGAATCA
AGGGATTCAAGATTGAGAGACTTTAGTTGGGTTACAAATGGACTTTACAGGCTGTTCAGA
TCAAGACGGGCTCTCTCATTTTCATACCCATTTGCATTTTATATGTTTGGTGATGACTTA
TTTAAGGATGAAATGACAAATGAGGAAAAGGAAATAAAACAGCATTTATTTGAGGACCAG
CAACAGCAGCTTGAGGCAAATGTTGAAAAGTTATCAAAAGTTTTTGAGGATCCATTTGAT
AGTTTTGAAGAGACAGAGATTATGGAAATGAGGATGCAAGTCTTGAATCTCTCTGTGGTA
ACTGATAAACTATGTAAGAAAATGTATGAATGCATCGAGACTGATTTATTGGGAGCTCTA
CAGTTTAGTAGTCACAATATAGCTCCGTACCAGTCAAAGGGCATTGAGAGAGCAACAGAG
CTTAATGGAGGCCGGAACGCCAAAGCAAACAACAACATTACATGTCAAAAAGCCCATGAC
CAGACAAATGGAGGTTCCATAGAATTGGTTCATCCATCAGGTTGTGGGACATCAGATGAG
AGTGGATGCTCCTCAAGGAAGCGTACAAGAGAGGATTCCGGTGGTAGCTTTTTCGATCTT
AACTTGCCTGCTGAGCTCATTGATAGGAATTGA

Peptide Sequence

PEP ID

Solyc01g109280.3.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT2G16090.4)
Sequence

MEDYGSSDEDTYSSDQESYDGLENEETDSQWGSSTGNSCKVITRESLLVAQREDLRRVMD
LLSLREHHARTLLIHYRWDVERLFAILVEKGKTCLFAEAGVTILEEIDVDSSVSSSTMMC
GICMEEVAGSEVTKMDCGHCFCNDCWTEHFIVKIKEGQSKRIRCMAHKCFAICDEAVIRK
LVSKRHPDLAEKFDRFLLESYIEDNKMVKWCPSIPHCGNAIRVETDEFCEVECSCGLQFC
FSCLSEAHSPCSCWMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCIC
GQAFCWLCGGATGRDHTWSSIAGHSCGRYKEDQEKKSERAKRDLYRYMHYHNRYKAHTDS
FTQESRLRETIKEKVANLESRDSRLRDFSWVTNGLYRLFRSRRALSFSYPFAFYMFGDDL
FKDEMTNEEKEIKQHLFEDQQQQLEANVEKLSKVFEDPFDSFEETEIMEMRMQVLNLSVV
TDKLCKKMYECIETDLLGALQFSSHNIAPYQSKGIERATELNGGRNAKANNNITCQKAHD
QTNGGSIELVHPSGCGTSDESGCSSRKRTREDSGGSFFDLNLPAELIDRN*

Transcript Sequence

Transcript ID

Solyc01g109280.3.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT2G16090.4)
Sequence

AAGCTAAAAATAAGTAAGCCCTTTTCCTATAAAATTAAAAAAAGAATCACAGACGTACAT
ATTTTTCTCTATATCCTCTCGCCGGCCGGAGATATACGTCGCCGGGAAAACGTTAACTCA
CTCAAGGAACCTCTATTTATCCCTATCGTCTTCGGTGACAAGCTGATTGGAAGGGTTGAT
TTCTCACTTCGATCTGGATTCATACGTTTTTTTTTGGGTTTTTAATCTGTGCAGCGGCGA
CAAGTGAATGGAGGATTACGGGAGCAGTGACGAAGATACATATTCGTCTGATCAAGAATC
TTATGACGGACTCGAGAATGAAGAGACTGATTCTCAATGGGGCTCTTCCACGGGAAACTC
CTGCAAGGTAATCACAAGGGAGTCTCTTTTGGTGGCACAGAGAGAAGATTTGCGGAGAGT
GATGGACTTGCTCTCACTAAGAGAACACCATGCAAGAACCTTGCTCATTCACTATCGTTG
GGATGTCGAGAGGTTGTTTGCGATTCTTGTTGAAAAGGGAAAGACTTGCTTATTTGCTGA
AGCAGGGGTAACTATTCTTGAAGAAATTGATGTTGACTCGTCTGTGTCTTCTTCGACTAT
GATGTGCGGCATATGCATGGAAGAGGTAGCAGGGAGTGAAGTCACGAAAATGGACTGTGG
CCACTGCTTCTGCAATGACTGTTGGACAGAGCATTTTATTGTAAAAATAAAGGAGGGTCA
GAGTAAGAGAATAAGGTGCATGGCTCATAAATGCTTTGCTATCTGTGATGAAGCTGTTAT
CAGAAAGCTAGTTAGTAAAAGGCATCCTGATTTGGCAGAGAAATTTGATCGGTTTCTCCT
TGAATCATACATTGAGGACAATAAAATGGTGAAATGGTGTCCAAGTATCCCTCATTGTGG
GAATGCTATTCGAGTAGAGACCGATGAGTTCTGTGAAGTAGAATGTTCATGTGGTTTACA
GTTCTGTTTCAGTTGCTTATCAGAAGCACATTCACCTTGTTCTTGCTGGATGTGGGAACT
TTGGACCAAGAAGTGCCGAGACGAATCCGAGACTGTTAACTGGATTACAGTTCACACTAA
GCCTTGTCCAAAGTGTCATAAGCCGGTCGAGAAGAATGGAGGTTGCAACTTAGTTAGCTG
CATTTGTGGGCAAGCATTTTGTTGGCTATGTGGTGGAGCTACTGGCCGAGATCATACTTG
GTCAAGTATCGCTGGTCACAGCTGTGGTCGTTATAAGGAAGATCAGGAGAAGAAGTCTGA
ACGGGCTAAGCGTGATCTCTATCGCTACATGCATTATCACAATCGTTATAAAGCTCATAC
GGATTCTTTTACACAGGAGTCTCGTCTGAGGGAGACCATAAAAGAAAAGGTAGCAAATTT
AGAATCAAGGGATTCAAGATTGAGAGACTTTAGTTGGGTTACAAATGGACTTTACAGGCT
GTTCAGATCAAGACGGGCTCTCTCATTTTCATACCCATTTGCATTTTATATGTTTGGTGA
TGACTTATTTAAGGATGAAATGACAAATGAGGAAAAGGAAATAAAACAGCATTTATTTGA
GGACCAGCAACAGCAGCTTGAGGCAAATGTTGAAAAGTTATCAAAAGTTTTTGAGGATCC
ATTTGATAGTTTTGAAGAGACAGAGATTATGGAAATGAGGATGCAAGTCTTGAATCTCTC
TGTGGTAACTGATAAACTATGTAAGAAAATGTATGAATGCATCGAGACTGATTTATTGGG
AGCTCTACAGTTTAGTAGTCACAATATAGCTCCGTACCAGTCAAAGGGCATTGAGAGAGC
AACAGAGCTTAATGGAGGCCGGAACGCCAAAGCAAACAACAACATTACATGTCAAAAAGC
CCATGACCAGACAAATGGAGGTTCCATAGAATTGGTTCATCCATCAGGTTGTGGGACATC
AGATGAGAGTGGATGCTCCTCAAGGAAGCGTACAAGAGAGGATTCCGGTGGTAGCTTTTT
CGATCTTAACTTGCCTGCTGAGCTCATTGATAGGAATTGACCTTATTGAGTTGCTAGTTA
TTTTGAACCAAGTGTACAGCTCTGAAAAAAAGAAAAAAAAAGACAAAGCTATTCTCAGAG
AGTTGAGATGATAGTTTAACAGGTGATTGCATTTCACTGCGTCATTCTATTCTGTTCTTC
AAATTTTTTGAGATGCCCTGTTAGAGGATAAAAAATACCTTAAAATATAGTTAGTTTTGG
TCCAGATTTCAAATGTATAGCCTTTATTTGGCTTCTTTGGGCTAGGTAGTTATGTATTTT
CTTACTGTCCCTTCCCTCACCCCCATGTGAGCACTCTAAAACGGGCAATGCTTCCTTTGA
ACTTTTGGTTTCATGTCCATTATGGGAAATATATTTGGTAGAATTTCTACATCAGCGTTG
TTTACTGGTTTCTCTTCTCTTATTTAGATGTCTCCTAATGCCTCTTTTTACATATTTGAT
GAGATTGATTCATGTGTATTTCGAGACCTCCAGCATGTTTTCTAACTAAGTACTGCAATT
TCCTGGAGATACAAATGTGTATCGTGATTAGAAATTTTGTATCCTGCACAGAGAGTTATA
GCTAGTTTAACAACACCATCTATGTATGTTGGCTGCTAGCCCAGTGCAACCTTTTTCCTT
TTGTCTTGGGTTTGGGACCTGAATTAGAGTAGGAGAGGAAGAGGAAGGGGAAAGTTCATT
ATAATAAAATGCGTTACAAAGAAGAGTTCGTATAGATTACAACTAAATGCTTTCACACAG
CATGTACCAAAATAGCATAGAAACAGTGCATCTAATCACATAGGTATGGTAACATCAAAA
TGCATGAACTCTAGTGTATAT