Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc01g107360.3.1
CDS Infomation	Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 - K4B9A4_SOLLC)
Sequence	ATGACCACCACCAATATCTCGTCCTTAGAAACAAGGTACATGTATTCTTGTCAGGCTAGA GGAGTTCCACCTAATAAACAAGTTCTGTCAGCTCTTTTCAAGGCCAAACTGAAAAAGGCC CGCCATGAGGTGTCTATCTTAGTGATTTTGCTGGATGACATCAAGGATGCTGATTTCCAC CCACTACTCGATTTGTTGACGGAAGCTGATCTTTCTGAGATTGATGCAGTAGATATTATA AATAGATCTGTCTGCATCCTGAGTTGGGAGTATCTTCTTGCTTTAATGCGTGTCAGCAGT AGGAAGCTTCGAGTTGTTGATATCCAGGATATATTGTTTGGAAAGGACTTCTTGCTGGAT CTTGCTCAACGCGGCTTACCATGCCAAATCCTAAATCTGAGGTCCTCCCATTTCCGAAAG CTCAACATGATTGGGAATTTTGCGCGGATGCACACTCTTAATCTAGATTTCAGTGCATCA CTTACGAATTTCCGTGAAGACTGTTTTACCTGCATGCCAAATTTGAAGTTCCTTTCATTG TGTGAAACAAGAATCACTAATTTATGGACTACCACTGCTGCACTTGCGAAACTCCCCGCC TTAGTTGAATTACGCTTTCAGCATTTCTTACAGGATGATGAAGCACGGAAGCATGCTGCA TCAGATAGAAGGAATGATTACTGGGATTCAGATCATATGCAGACTAGTATTCATGATGAA GCACCATCAGTTAGTGGTGAAAATATCATGTATAGGATTTTTAATGAAGAAGACCAATAT TTGAATAATACTGATATGAATCTTAATATGAGTAGCGAAACAGAAGATTCATCTGATGAC AGTGAAGTGGACTTTTCAAGTCAGGATCGTGAAACGAGTTTCATGGAACTCTTGCCAGAT GTACCTCCTGGTTGGGAGGATCTGCTTAATCTGCGAAATGAGGTTTCTTTTGGAACGTTG GAGATGCAGGATGACGAAGAACCATTCTTCCGTTTGTCTGACACACGGCTTCCTTACATT ACCCCAAAGAAGTGTATATCTCATAATCCTTCACCGATATGTTTTGAAAAATTCTACCGT GAGTACATGATAGCTTCACTGCCAAACCTGAAAATTCTAGATAACTTGCATATTAGGAAG GTTGACAGAGAAAAGGCCATATTGATCTTCTCAGAAAAATTTGAGCACCTGCCGTATAAG AGGAAGTATAAGGAGAGTGTTGTCAGCATTCTGCAAAAGCGTGAGATTAGAGCAAACCAT ACTCATGGGCCCTCTCCTAGGAGAAAGTCGCAATACTTTTATTCTAGATCATTGTCTGCT GCAAAAGTTGGTTCTGTTGCTTGGCCTTCCCTTCGTCCCCTCTCGATCGTGGGCACCACA GCAAGAGATGATCAAAGAAGTTACCGACCACGCCAATTTGAGTATCATCCATCTGATGCA AGCCTTATGGTTTTTGGAACACTGGATGGTGAAGTAATTGTTATCAACCATGAGAGTGAA AAAATTGTCAGTTATATTCCCTCACTTGGAGCAATGAACAGTGTTCTGGGTTTATGCTGG CTCAAAAATTATCCCTCCAAGGTCATTGCTGGTTCTGATAACGGTTCACTTAGATTATAT GACATCCGGTTGATGTCTACAACAGCCACAGGCAGTCATCAGAGTGCAGGTTCAATTATG TTTGATGACTTTGACCAGTTAACGTCAGTTCATGTCAACTCTACCGATGAATTATTTCTT GCAAGTGGATACTCAAAACATGTTGCTCTGTACGACATTAGCAGTGGCAGACGGTTGCAG GTGTTTGATGATATGCATCGAGAACATATAAATGTCGTTAAATTTGCACACCACTCTCCA TCTATTTTTGCCACTTCATCATTTGATCGGGATGTTAAGTTGTGGGATTTAAGACAGAAA CCAAACCATCCTTGCTACACTGCTTTAAGTTCTCGTGGAAATGTGATGGTTTGCTTTTCT CCTGATGACCAATATCTTCTTGTCTCAGCTGTTGACAATGAGGTGAAACAACTGTTAGCT GTTGATGGGAGGCTCCATCTAGATTTTAGTATTACTTCAACAGGGAGCTCTCAGAATTAC ACGCGATCTTATTACATGAACGGAAGGGATTATGTCATCAGCGGAAGCTGTGATGAACAT GTAGTCCGCATCTGTTGTGCTCAAACGGGTAGGCGGCTTAGAGATGTATCATTGGAGGGA AAAGGTTCAGGAGCTTCAATGTTTGTCCAATCCTTGAGGGGTGATCCTTTCAGAGATTTT AGCATGAGCGTTTTGGCAGCCTATATACGTCCAAGCTCAAACTCAGAAATTGTTAAGGTT CAATTCACTGCCTTGACAAGTCGATTTTTGACATTGAGCCTGTTATTTCACCTGGGTGCA TTATATTCTTTCATGGATATGATGCAGGTAAATCTGTTGGCATCAACTGACCAAGACAAA GGGCACTTGTACACTCGGCATTCTCATCCACTATGTAGTAGCGGAGGCTGA

Peptide Sequence

PEP ID	Solyc01g107360.3.1
PEP Infomation	Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 - K4B9A4_SOLLC)
Sequence	MTTTNISSLETRYMYSCQARGVPPNKQVLSALFKAKLKKARHEVSILVILLDDIKDADFH PLLDLLTEADLSEIDAVDIINRSVCILSWEYLLALMRVSSRKLRVVDIQDILFGKDFLLD LAQRGLPCQILNLRSSHFRKLNMIGNFARMHTLNLDFSASLTNFREDCFTCMPNLKFLSL CETRITNLWTTTAALAKLPALVELRFQHFLQDDEARKHAASDRRNDYWDSDHMQTSIHDE APSVSGENIMYRIFNEEDQYLNNTDMNLNMSSETEDSSDDSEVDFSSQDRETSFMELLPD VPPGWEDLLNLRNEVSFGTLEMQDDEEPFFRLSDTRLPYITPKKCISHNPSPICFEKFYR EYMIASLPNLKILDNLHIRKVDREKAILIFSEKFEHLPYKRKYKESVVSILQKREIRANH THGPSPRRKSQYFYSRSLSAAKVGSVAWPSLRPLSIVGTTARDDQRSYRPRQFEYHPSDA SLMVFGTLDGEVIVINHESEKIVSYIPSLGAMNSVLGLCWLKNYPSKVIAGSDNGSLRLY DIRLMSTTATGSHQSAGSIMFDDFDQLTSVHVNSTDELFLASGYSKHVALYDISSGRRLQ VFDDMHREHINVVKFAHHSPSIFATSSFDRDVKLWDLRQKPNHPCYTALSSRGNVMVCFS PDDQYLLVSAVDNEVKQLLAVDGRLHLDFSITSTGSSQNYTRSYYMNGRDYVISGSCDEH VVRICCAQTGRRLRDVSLEGKGSGASMFVQSLRGDPFRDFSMSVLAAYIRPSSNSEIVKV QFTALTSRFLTLSLLFHLGALYSFMDMMQVNLLASTDQDKGHLYTRHSHPLCSSGG*

Transcript Sequence

Transcript ID	Solyc01g107360.3.1
Transcript Infomation	Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 - K4B9A4_SOLLC)
Sequence	GGGCTCAAAATCATATAAAATGTTGAGACAAATTAGGGAGACTTTTTGATTCGAAAAATT GCTTCTTCGCATGTAACGGCCAACTGTATCGGAGTAATCTAGTCGATCATCGGAACTTTG TAGTAATCGCACTCACCGTCTTCCCCGCTGTTATCATCGGAGCTATCATCATGACCACCA CCAATATCTCGTCCTTAGAAACAAGGTACATGTATTCTTGTCAGGCTAGAGGAGTTCCAC CTAATAAACAAGTTCTGTCAGCTCTTTTCAAGGCCAAACTGAAAAAGGCCCGCCATGAGG TGTCTATCTTAGTGATTTTGCTGGATGACATCAAGGATGCTGATTTCCACCCACTACTCG ATTTGTTGACGGAAGCTGATCTTTCTGAGATTGATGCAGTAGATATTATAAATAGATCTG TCTGCATCCTGAGTTGGGAGTATCTTCTTGCTTTAATGCGTGTCAGCAGTAGGAAGCTTC GAGTTGTTGATATCCAGGATATATTGTTTGGAAAGGACTTCTTGCTGGATCTTGCTCAAC GCGGCTTACCATGCCAAATCCTAAATCTGAGGTCCTCCCATTTCCGAAAGCTCAACATGA TTGGGAATTTTGCGCGGATGCACACTCTTAATCTAGATTTCAGTGCATCACTTACGAATT TCCGTGAAGACTGTTTTACCTGCATGCCAAATTTGAAGTTCCTTTCATTGTGTGAAACAA GAATCACTAATTTATGGACTACCACTGCTGCACTTGCGAAACTCCCCGCCTTAGTTGAAT TACGCTTTCAGCATTTCTTACAGGATGATGAAGCACGGAAGCATGCTGCATCAGATAGAA GGAATGATTACTGGGATTCAGATCATATGCAGACTAGTATTCATGATGAAGCACCATCAG TTAGTGGTGAAAATATCATGTATAGGATTTTTAATGAAGAAGACCAATATTTGAATAATA CTGATATGAATCTTAATATGAGTAGCGAAACAGAAGATTCATCTGATGACAGTGAAGTGG ACTTTTCAAGTCAGGATCGTGAAACGAGTTTCATGGAACTCTTGCCAGATGTACCTCCTG GTTGGGAGGATCTGCTTAATCTGCGAAATGAGGTTTCTTTTGGAACGTTGGAGATGCAGG ATGACGAAGAACCATTCTTCCGTTTGTCTGACACACGGCTTCCTTACATTACCCCAAAGA AGTGTATATCTCATAATCCTTCACCGATATGTTTTGAAAAATTCTACCGTGAGTACATGA TAGCTTCACTGCCAAACCTGAAAATTCTAGATAACTTGCATATTAGGAAGGTTGACAGAG AAAAGGCCATATTGATCTTCTCAGAAAAATTTGAGCACCTGCCGTATAAGAGGAAGTATA AGGAGAGTGTTGTCAGCATTCTGCAAAAGCGTGAGATTAGAGCAAACCATACTCATGGGC CCTCTCCTAGGAGAAAGTCGCAATACTTTTATTCTAGATCATTGTCTGCTGCAAAAGTTG GTTCTGTTGCTTGGCCTTCCCTTCGTCCCCTCTCGATCGTGGGCACCACAGCAAGAGATG ATCAAAGAAGTTACCGACCACGCCAATTTGAGTATCATCCATCTGATGCAAGCCTTATGG TTTTTGGAACACTGGATGGTGAAGTAATTGTTATCAACCATGAGAGTGAAAAAATTGTCA GTTATATTCCCTCACTTGGAGCAATGAACAGTGTTCTGGGTTTATGCTGGCTCAAAAATT ATCCCTCCAAGGTCATTGCTGGTTCTGATAACGGTTCACTTAGATTATATGACATCCGGT TGATGTCTACAACAGCCACAGGCAGTCATCAGAGTGCAGGTTCAATTATGTTTGATGACT TTGACCAGTTAACGTCAGTTCATGTCAACTCTACCGATGAATTATTTCTTGCAAGTGGAT ACTCAAAACATGTTGCTCTGTACGACATTAGCAGTGGCAGACGGTTGCAGGTGTTTGATG ATATGCATCGAGAACATATAAATGTCGTTAAATTTGCACACCACTCTCCATCTATTTTTG CCACTTCATCATTTGATCGGGATGTTAAGTTGTGGGATTTAAGACAGAAACCAAACCATC CTTGCTACACTGCTTTAAGTTCTCGTGGAAATGTGATGGTTTGCTTTTCTCCTGATGACC AATATCTTCTTGTCTCAGCTGTTGACAATGAGGTGAAACAACTGTTAGCTGTTGATGGGA GGCTCCATCTAGATTTTAGTATTACTTCAACAGGGAGCTCTCAGAATTACACGCGATCTT ATTACATGAACGGAAGGGATTATGTCATCAGCGGAAGCTGTGATGAACATGTAGTCCGCA TCTGTTGTGCTCAAACGGGTAGGCGGCTTAGAGATGTATCATTGGAGGGAAAAGGTTCAG GAGCTTCAATGTTTGTCCAATCCTTGAGGGGTGATCCTTTCAGAGATTTTAGCATGAGCG TTTTGGCAGCCTATATACGTCCAAGCTCAAACTCAGAAATTGTTAAGGTTCAATTCACTG CCTTGACAAGTCGATTTTTGACATTGAGCCTGTTATTTCACCTGGGTGCATTATATTCTT TCATGGATATGATGCAGGTAAATCTGTTGGCATCAACTGACCAAGACAAAGGGCACTTGT ACACTCGGCATTCTCATCCACTATGTAGTAGCGGAGGCTGATCTTTCTGCAGTCACATTT CATCAACTTAAAAAGGTACTTTAATGGTTTCTGCAGTAATCTTTGTAGATACAATGTAGA CTAGCTAGGTATTGTAGAAAAGTTTGTAGGACAGCAATCGTGTAGATGGTTGCTTCAACT ATCTGTTTTTCTGTTTGATCAACCTCATGTATGTTGTAACATTTGTATAAAGTAGAGTGC TAATTTATGAGACATCTAAACTGGTTGTGCACG