Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc01g107180.3.1
CDS Infomation	Phototropic-responsive NPH3 family protein (AHRD V3.3 *** B9HMY5_POPTR)
Sequence	ATGAAGTTCATGAAACTTGGATCCAAGCCTGATAATTTTCAAACAGATGGGAACAATGTC AGATATGTTGCTTCAGAGTTGGCCTCGGACATCGCTATCAATGTAGGAGATGTGAAGTTT TATCTGCATAAGTTTCCTCTCCTTTCCAAGAGTGCCACTTTGCAAAAGCTGGTTTCTAAT GCAAGTGAAGGGAATAGTGACGAAGTTGACATTCATGACATTCCTGGAGGACCTAGTGCT TTTGAAATATGTGCCAAGTTTTGTTACGGCATGACTGTTACACTGAATGCTTATAATGTC ATTTCTACAAGGTGTGCTGCTGAGTATCTCGGTATGAATGAAAGTCTTGAGAAAGGAAAC CTGATCTACAAGATTGATGTTTTCCTGAACTCTAGCATTTTCCGAAGTTGGAAAGACTCA ATAATAGTTCTTCAGACTACTAAGTCTCAATCACGCATGTGCGAGGAACTGAAGTTGACC AGCCACTGCATTGATGCTGTAGCATCCAGGGCTTCCGTTGATGTTTCCAGGGTGGATTGG TCCTATACCTATAATCGTAAAAAGCTTCCAGAGGAGAATGGAAATGATCCTAACTTGAAT GGAATTAGATGCCGCATGGTGCCAAAAGATTGGTGGGTTGAGGATTTATGTGAACTTGAA GTAGACCTATATAAGCGGGTGGTTATCACCATAAAAAACAAAGGGATTGTTTCTTCTGAA GCTATTGGAGAAGCTGCCAAAGCTTATGCATATAGAAGGTTTCCAGGCTTTAATAAAGGA GCCTTCCAATTCAATGATGTCTCCAAATGTCGCCCAATATTGGATACGGTGGTATGGCTA TTGCCCTCTGAGAAAGGTTGCGTCTCTTGTAGTTTCTTGTTTAAATTGCTAAAAGCATCA ATTTCACTAGACTCTGGAGAAACTGTGAAGGCAGAACTAGTCAAGAGAATAGGACAGCAA TTGGAAGAATCTTCTGTGAATGATCTTTTGATTCGAGCGGCAGATGGGGAAGGAACCATG TATGATGCCCATGTTGTACAGAAAATACTAGAAGCGTTTATGATGAGAGATAAGGATTCT GAACCTCAGTTAGAAGATGAAGATGAAATTCAGGAGGTCCGAAAGCCAGGGATTTTATCA GAAGCTTCAAAACTGATGGTGGCAAAGCTAGTTGATGGATATCTTACCGAAATTGCAAGA GATCCTAATCTCCCTATATCAACATTTGTTGGTCTGGCAGAGATGGTATCTAATTTCCCT CGACCCGGTCATGATGGAATTTATCGCGCAATTGATATGTACCTTAAGGAGCATCCTGGA ATCAGCAAGAGTGAGAGGAAAAGAATTTGTAAGCTGATGGACTGCAAGAAGCTCTCTGTG GATGCTTGTATGCATGCTGTCCAAAATGAGAGGCTTCCCCTTCGTGTTGTTGTACAAGTG CTGTTTTTTGAGCAAGTCAGGGCTAACGCCTCATCTGGAAGCAGTACTCCGGATCTTCCA AAAGCAATTAGGGACCTTAACAGTACTTCATATGGAAGCTCAAGATCTGCAACAACTAAT ACAGAAGAAGATTGGGATGCTGCAGCCTCTGCAGAAGAACTCAGGGCTTTGAGGGGAGAG TTGGCAGCCTTAAGAATGGGAAATGGAGGAACAAATGACAAAGTCAATGTTATTGATGCC AAGAGCCATGCAGACAGGGCTGCTATGAGTAAAATGAAAGGTTTGCTCATGTCAAAGAGG CTCTTTTCGAAAATCTGGTCAAACAAAGGTGGACAAGGGGAGAATAGTGGCTCAGATTCG TCCGAGAGTCTTGGATCTGCTAATAACTTGGAAGAAGCTAAATCTACACCTTCAAGAAAA GTAAGGCATTCAGTTTCTTAG

Peptide Sequence

PEP ID	Solyc01g107180.3.1
PEP Infomation	Phototropic-responsive NPH3 family protein (AHRD V3.3 *** B9HMY5_POPTR)
Sequence	MKFMKLGSKPDNFQTDGNNVRYVASELASDIAINVGDVKFYLHKFPLLSKSATLQKLVSN ASEGNSDEVDIHDIPGGPSAFEICAKFCYGMTVTLNAYNVISTRCAAEYLGMNESLEKGN LIYKIDVFLNSSIFRSWKDSIIVLQTTKSQSRMCEELKLTSHCIDAVASRASVDVSRVDW SYTYNRKKLPEENGNDPNLNGIRCRMVPKDWWVEDLCELEVDLYKRVVITIKNKGIVSSE AIGEAAKAYAYRRFPGFNKGAFQFNDVSKCRPILDTVVWLLPSEKGCVSCSFLFKLLKAS ISLDSGETVKAELVKRIGQQLEESSVNDLLIRAADGEGTMYDAHVVQKILEAFMMRDKDS EPQLEDEDEIQEVRKPGILSEASKLMVAKLVDGYLTEIARDPNLPISTFVGLAEMVSNFP RPGHDGIYRAIDMYLKEHPGISKSERKRICKLMDCKKLSVDACMHAVQNERLPLRVVVQV LFFEQVRANASSGSSTPDLPKAIRDLNSTSYGSSRSATTNTEEDWDAAASAEELRALRGE LAALRMGNGGTNDKVNVIDAKSHADRAAMSKMKGLLMSKRLFSKIWSNKGGQGENSGSDS SESLGSANNLEEAKSTPSRKVRHSVS*

Transcript Sequence

Transcript ID	Solyc01g107180.3.1
Transcript Infomation	Phototropic-responsive NPH3 family protein (AHRD V3.3 *** B9HMY5_POPTR)
Sequence	AATAATTCAACTGCACCACAACTATGTTGATCACTTACATTATTACCGTCATTAAAAATA TATATTAAACAAAATATTAGTAATATATAAAGTTAATGCACACATTTTTCTTTTAATTCA TTCTACATTCAACGTACTCATTTGACTTATTTGATACGTGAATTAAGATTGAATAATCTA GAATTAAATTTATATTACGTTTTTTTTATTATTCCACTATCAATTAAATACAATGTAAAT TTTATCTTAGTTCTATCATCTTAATATCATTTCATCTTAATTTTTTCAAACTAAATATTA ATTAGTTTGGAAATTATAATATCAAAATTATGATTCTAGAATAATATAGTCATAAAACCA ATCACTTTAAAGAGGAGAAAAACAGAGAAGGGAGGGAGCAAGAAAGCAGAGTGTCAGTAT GGCGTGCATATCATAGCAAATTGGGTGTCTTCATCACTACAACCTTCTCAATCTTTTGGT ACTGAAATAGATAATAGTTTTCCCACTTTGCCCTGAAAATTACAGAGTGAAAAAAAAATA GGAAAAAGGTTTAAAAAAACATAAAAAGGAAAAAAAGAAGAAGCAAATACTCTTAAATTT GAGTGGACTTGTGCCTTTTTATTGTTTGTCCTTTGATAAGAAATGGTAAAATAGAAAACT TCTGATACCATAAAGTTGTTTTGCTGATTCTAGCAAAACTGATTAGATGCTTGCTGTCTC CCGTTTTGGTGGTGCCTTCAACTGATACCAAGATGCTGTTTTCTGTTGCAGTGATTTGTT GAGTACTTAAAGGAAGTAAATTTTCTCTAGTGTATACAAATATCAGATCTTTCTAAGTTG TCAAGATGAAGTTCATGAAACTTGGATCCAAGCCTGATAATTTTCAAACAGATGGGAACA ATGTCAGATATGTTGCTTCAGAGTTGGCCTCGGACATCGCTATCAATGTAGGAGATGTGA AGTTTTATCTGCATAAGTTTCCTCTCCTTTCCAAGAGTGCCACTTTGCAAAAGCTGGTTT CTAATGCAAGTGAAGGGAATAGTGACGAAGTTGACATTCATGACATTCCTGGAGGACCTA GTGCTTTTGAAATATGTGCCAAGTTTTGTTACGGCATGACTGTTACACTGAATGCTTATA ATGTCATTTCTACAAGGTGTGCTGCTGAGTATCTCGGTATGAATGAAAGTCTTGAGAAAG GAAACCTGATCTACAAGATTGATGTTTTCCTGAACTCTAGCATTTTCCGAAGTTGGAAAG ACTCAATAATAGTTCTTCAGACTACTAAGTCTCAATCACGCATGTGCGAGGAACTGAAGT TGACCAGCCACTGCATTGATGCTGTAGCATCCAGGGCTTCCGTTGATGTTTCCAGGGTGG ATTGGTCCTATACCTATAATCGTAAAAAGCTTCCAGAGGAGAATGGAAATGATCCTAACT TGAATGGAATTAGATGCCGCATGGTGCCAAAAGATTGGTGGGTTGAGGATTTATGTGAAC TTGAAGTAGACCTATATAAGCGGGTGGTTATCACCATAAAAAACAAAGGGATTGTTTCTT CTGAAGCTATTGGAGAAGCTGCCAAAGCTTATGCATATAGAAGGTTTCCAGGCTTTAATA AAGGAGCCTTCCAATTCAATGATGTCTCCAAATGTCGCCCAATATTGGATACGGTGGTAT GGCTATTGCCCTCTGAGAAAGGTTGCGTCTCTTGTAGTTTCTTGTTTAAATTGCTAAAAG CATCAATTTCACTAGACTCTGGAGAAACTGTGAAGGCAGAACTAGTCAAGAGAATAGGAC AGCAATTGGAAGAATCTTCTGTGAATGATCTTTTGATTCGAGCGGCAGATGGGGAAGGAA CCATGTATGATGCCCATGTTGTACAGAAAATACTAGAAGCGTTTATGATGAGAGATAAGG ATTCTGAACCTCAGTTAGAAGATGAAGATGAAATTCAGGAGGTCCGAAAGCCAGGGATTT TATCAGAAGCTTCAAAACTGATGGTGGCAAAGCTAGTTGATGGATATCTTACCGAAATTG CAAGAGATCCTAATCTCCCTATATCAACATTTGTTGGTCTGGCAGAGATGGTATCTAATT TCCCTCGACCCGGTCATGATGGAATTTATCGCGCAATTGATATGTACCTTAAGGAGCATC CTGGAATCAGCAAGAGTGAGAGGAAAAGAATTTGTAAGCTGATGGACTGCAAGAAGCTCT CTGTGGATGCTTGTATGCATGCTGTCCAAAATGAGAGGCTTCCCCTTCGTGTTGTTGTAC AAGTGCTGTTTTTTGAGCAAGTCAGGGCTAACGCCTCATCTGGAAGCAGTACTCCGGATC TTCCAAAAGCAATTAGGGACCTTAACAGTACTTCATATGGAAGCTCAAGATCTGCAACAA CTAATACAGAAGAAGATTGGGATGCTGCAGCCTCTGCAGAAGAACTCAGGGCTTTGAGGG GAGAGTTGGCAGCCTTAAGAATGGGAAATGGAGGAACAAATGACAAAGTCAATGTTATTG ATGCCAAGAGCCATGCAGACAGGGCTGCTATGAGTAAAATGAAAGGTTTGCTCATGTCAA AGAGGCTCTTTTCGAAAATCTGGTCAAACAAAGGTGGACAAGGGGAGAATAGTGGCTCAG ATTCGTCCGAGAGTCTTGGATCTGCTAATAACTTGGAAGAAGCTAAATCTACACCTTCAA GAAAAGTAAGGCATTCAGTTTCTTAGTTCTAACAGCTTTTAGGAATGCATTGTTGGTGGC CTTTTTTTGAACTTAAAAAATGATGTTAGCATATGTCAAAAGACTAGTCATCTTTCTCTG AAGTCTCTAGAAGAAAATTGAAGGATATAGTATTAACAAAAAGTTTGTAGGATGAAATGA AGCCCCTCTTATGAGCCAAAAAAACAGAGCTTTTATTGTATAGATGTTCTAACATTAGGT GGCTCTTAAATTTTATGACTTTCTGGTGTGCTATTATCATATAAGAAATTTTACTGTGAA TTTAGACTTAAGACAGTCTAAGCAGCACACTGTCACTTATGAATGGCAAAGGTAAGTTCA TTTTATATATACATTTCATTTCCCAGTATGAG