Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g106280.3.1
CDS Infomation

PSTVd RNA-biding protein
Sequence

ATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCA
GGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAAC
CCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGAT
GATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCG
ATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTC
GTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAA
CAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGA
TCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGT
AAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGT
GTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTG
GCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCC
TTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAA
TCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTT
ACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAG
CAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTT
GAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCAC
ATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAG
AAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCA
CCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCA
GCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGG
GCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGG
TTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAAT
GAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAG
ACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAG
AGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCA
ACTACATCCGTTGCCGAAGCAGATGGGCCTACTACTAGTGAGAAAAACGATTCCTTCAAA
AAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCT
ACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAAT
GGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCC
TCTTCTAGTGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCA
CACTCTTGA

Peptide Sequence

PEP ID

Solyc01g106280.3.1
PEP Infomation

PSTVd RNA-biding protein
Sequence

MASAVLASRNESSWAQSGGAGGGFMGKTPYSHTQLNPNHNPNPKKKQKQFHHTSNGRHMD
DSPAVTQTASDDAYSFNQRPIESTTNVDGLNFGGYLTFNVVSYNKAEVNELRSRLMAEVE
QIRNLKDRIESGQLSTTNPRSQGKSKKQSGNKRPTPSGSSKDLKKLPNGVENRNFGNPGG
VDGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRPMDLGTVK
SNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNGFAEQLLGRFEDMFRPLQDKMNKL
EGGRRDYHPVDELQGSSWNHIPTPERVKKPKPTPVPNISKKQERMQNHSSASTPSLPVPP
PNPPARQQSPLSTPSPVRAPAAKPQSAAKVPTMGKQPKPRAKDPNKREMNMEEKHKLGVG
LQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTK
RQALMNNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKAKKGDVGEEDVEIEDDEPA
THFPPVEIEKDEGGGRDQENGGGGGSSSSSSSSSSSSGSSSSSDSDSGSSSGSDSDADDA
HS*

Transcript Sequence

Transcript ID

Solyc01g106280.3.1
Transcript Infomation

PSTVd RNA-biding protein
Sequence

GCTCAATCCCTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTT
TACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGAT
TCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGAT
AACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCAT
CCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTG
GATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACC
CTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGC
CAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAAT
CAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTT
ACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCC
GAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAG
GCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATC
TGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATG
GTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGC
TGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTC
TTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATT
TGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCA
ATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTC
TCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCG
GCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTA
CTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAG
AGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATC
CACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGA
AGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGG
ATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAA
GTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATT
TAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTAT
GGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAG
CCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACAT
CCGTTGCCGAAGCAGATGGGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCA
AGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATT
TTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTG
GTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTA
GTGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTT
GAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATA
AAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGC
AACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGA
ACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTT
AGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACA
CCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGA
CACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACAT
TGTGTTGGTCGGTTGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTG
GCAAATATGTTAAAAGTTGCTGG