Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g105310.3.1
CDS Infomation

metacaspase 2,Pfam:PF00656
Sequence

ATGGACAGCAGGAGATGCAAATGCCAGTGGTGTGGGATGAAGATAGCAGCTCCCATTGGA
GCACAAACAGCTACCTGTCCGAGGTGCCAATCTGTGACACAACTCCAACCTGCAAGAAAC
CATGGCTTTGCTAATTTTCCCACTGCCAATAACAATATGAGCCCAGCTTTTCCATCAAGG
CCAGGAAGGATGTGTGCAAATGCTAATAATTTTCAGCCTCAACAATTCAACCGCCCTATG
TCACCACAGATCAATAATATCCGACCTCCTGCAGTACATGGACGAAAAAGAGCGGTTCTG
TGCGGAATCACTTACCGTGGCCATCCAAAGAGTCTGAAGGGAAGCATTAATGATGTTTTA
TCCATGAGATATTTTCTGGTTGAGAAGTTGGGATTCCCAAATGCATCAGTACTTGTCCTT
ACGGAGGATGAGAAAGATCCATACAAATACCCAACGAAGGCCAATATCAGATCAGCCTTA
CGTTGGCTTGTTCAAGGCTGTCAGCCAGGAGATTCACTAGTGTTCCACTACTCTGGCCAT
GGCACACGAGTACGAGACCATGATGGTGATGAGATTGATGGGCACGACGAATCACTATGC
CCTGTTGATTTTGAGACAGAAGGGAGGATACTAGATGATGAGATCAATAATACCATTGTC
AGGCCCTTACCCCGCGGAGCCACACTTCATGGAATAATTGATACATGCTTTAGTGGAACT
TTCCTAGATTTGCCCTTTTTGTGCAGAATAAACAGGGCAGGATACTTTATGTGGGAGGAC
CATCGGATCCGCTCATACAAAGGTACTAACGGTGGAATAGCAATCTCTATCAGTGCCTGT
GACGACCATCAAAATTCTGGAGATACAACGGCTTTCACAGGCTTTCCAACAGGTGCCCTG
ACTTATAGTTTCATCCAAACATTGGAGCAACAGACTAAATTGACTTACGGACGCTTACTC
ATGAGTATGCAGAAGAAGATTCATGAAGCACAGAACGGCATAGGCCTTGATGGTGAAAAT
GAAACTCAGGAGCCCCAACTATCCTCATCTGAGCAGTTTGATATTCACTCGAAGATGGTG
GCTATATAG

Peptide Sequence

PEP ID

Solyc01g105310.3.1
PEP Infomation

metacaspase 2,Pfam:PF00656
Sequence

MDSRRCKCQWCGMKIAAPIGAQTATCPRCQSVTQLQPARNHGFANFPTANNNMSPAFPSR
PGRMCANANNFQPQQFNRPMSPQINNIRPPAVHGRKRAVLCGITYRGHPKSLKGSINDVL
SMRYFLVEKLGFPNASVLVLTEDEKDPYKYPTKANIRSALRWLVQGCQPGDSLVFHYSGH
GTRVRDHDGDEIDGHDESLCPVDFETEGRILDDEINNTIVRPLPRGATLHGIIDTCFSGT
FLDLPFLCRINRAGYFMWEDHRIRSYKGTNGGIAISISACDDHQNSGDTTAFTGFPTGAL
TYSFIQTLEQQTKLTYGRLLMSMQKKIHEAQNGIGLDGENETQEPQLSSSEQFDIHSKMV
AI*

Transcript Sequence

Transcript ID

Solyc01g105310.3.1
Transcript Infomation

metacaspase 2,Pfam:PF00656
Sequence

GTATATATTTTTAAATTCGGACTCATAAAAATTTAAATCATGCATATTCACCTGTGTCAT
ATATAAATGCCTTCCATATGTATATTGATTGATCATCTCAACTCTCAAGTAGTCAATCCA
CTTTGATCACCCTCCATACAATGGACAGCAGGAGATGCAAATGCCAGTGGTGTGGGATGA
AGATAGCAGCTCCCATTGGAGCACAAACAGCTACCTGTCCGAGGTGCCAATCTGTGACAC
AACTCCAACCTGCAAGAAACCATGGCTTTGCTAATTTTCCCACTGCCAATAACAATATGA
GCCCAGCTTTTCCATCAAGGCCAGGAAGGATGTGTGCAAATGCTAATAATTTTCAGCCTC
AACAATTCAACCGCCCTATGTCACCACAGATCAATAATATCCGACCTCCTGCAGTACATG
GACGAAAAAGAGCGGTTCTGTGCGGAATCACTTACCGTGGCCATCCAAAGAGTCTGAAGG
GAAGCATTAATGATGTTTTATCCATGAGATATTTTCTGGTTGAGAAGTTGGGATTCCCAA
ATGCATCAGTACTTGTCCTTACGGAGGATGAGAAAGATCCATACAAATACCCAACGAAGG
CCAATATCAGATCAGCCTTACGTTGGCTTGTTCAAGGCTGTCAGCCAGGAGATTCACTAG
TGTTCCACTACTCTGGCCATGGCACACGAGTACGAGACCATGATGGTGATGAGATTGATG
GGCACGACGAATCACTATGCCCTGTTGATTTTGAGACAGAAGGGAGGATACTAGATGATG
AGATCAATAATACCATTGTCAGGCCCTTACCCCGCGGAGCCACACTTCATGGAATAATTG
ATACATGCTTTAGTGGAACTTTCCTAGATTTGCCCTTTTTGTGCAGAATAAACAGGGCAG
GATACTTTATGTGGGAGGACCATCGGATCCGCTCATACAAAGGTACTAACGGTGGAATAG
CAATCTCTATCAGTGCCTGTGACGACCATCAAAATTCTGGAGATACAACGGCTTTCACAG
GCTTTCCAACAGGTGCCCTGACTTATAGTTTCATCCAAACATTGGAGCAACAGACTAAAT
TGACTTACGGACGCTTACTCATGAGTATGCAGAAGAAGATTCATGAAGCACAGAACGGCA
TAGGCCTTGATGGTGAAAATGAAACTCAGGAGCCCCAACTATCCTCATCTGAGCAGTTTG
ATATTCACTCGAAGATGGTGGCTATATAGGAACTTAAAGTATCCAACTCCAGCCCGAGTA
CAACTTCCCTGGCATAATAAACTTGTTGTACTAATAAAATTTGTAATAAATTCAACAGTT
TGTTTTACCATCGCTTGTAGATTCACTCATATAGTATTGTTCTGGTGTGAATCTTGGTCA
TATATTTTCGTTATGTAAACTATATAGCAGTAACACTGAATAAACTTCCAGATGGAAATT
TGCTAAGATGGTGTGGTTGGTCACATCAGTTATGTCCTGTATTTGGTTTTCTTTCCATAT
CCATCTATAACACGAATCATATCA