Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc01g104570.3.1
CDS Infomation	Kinetochore protein Ndc80 (AHRD V3.3 *** A0A103Y3D6_CYNCS)
Sequence	ATGAGAGGCGCCGGACGCCGTCGTACCAATTCTGCAGTGCCGGATCGCCGTCATCCACCA CCGACTCCGATAAACGACCCAAGGCAATTTATCTCCACTGGCGGGCGTGATTCCGACGCA AGCTTCGCCAGTAGCCGGCCTTCATCTGCCGGTGTAAACACTCGGTCCTCCGCTATCCCC ATCTCTGACCGCTCCTATCAACTCTCTGCTCTGCGTACAATCAATGCTTACCTTTCCTCC CACTCTCTCCCTTTTACTCTCAAACATCCTCTCCCTTCTGCAAAAGATATCACCGAAACC CTAAAATTCATTCTCTCTCGTTTCGGATTTTCCTTAGCAGAGTCGCATAAACTCGAAGAT GATCTCCAAACCCTACTGAAATCCCTAAATTGCCCCGTGAAATTGAACAAATCTGCATTA CGCGCCCCTGGGACGCCTCATTCCTGGCCTAGTCTACTTGCAGCAATTCACTGGCTTGTT CAGCTATGTAAATTTGATGATTACCGGATGAGTTCGGCTCAACCACTAGCTCCGAGTAAT AAGGAATTGAGATATACTGTAGAGAGTTATTTGCATTACTTTAGGGGGAAAGATGATCAA GTAGATGAATTGGATCGCCAATTTATGCAAGAGTTGGAACAACATAAGGAGCGGTTGGTT GAGGATGTGAATGTCTTGGAGGAGAATGTGAAGGCTCAAGAGGAAAAGTTGGAAGAAATG AAGACAGGACCATCGGAAAGAGAGACGTTGGAGAAGGAGAAGAAGAATGAGGAGTTGAAG AAGAGGGTGGAGGAACAAGGGATTAATTCCAGGGATGCAGATAGGATGAAGAGGGAGTTG CATGCTTTGGAAAGGGATATTGGGGATATTGAGAACCAGAGGATTGAATGGGAGGAGAAG GCTTGGGACCTCGACTCTGCGATTGGGAACATGTACAAGAAGCTTGAGGAGCTAATGATT GAGTGCAACCAATCTATCAGGAGGTTAAAGCTTGGAAATGAATTTCAGTATCAATTGAAT CCCCAAGGGTCCTCACCAGCAGAGGTATTAGGTATAAATTACAAAAAAACATTAAAGCCC ACTCTTGCATCCTTTGAAGATGAGATGAAAAAGAGTTCCATGGGGAAAATGGAAGAGTTG ATATATCTCCAGCAACAGTCATCTGAGAAGGCTATGAAATTAGAGTCAAAGAGGAATCGT CTGGCTACTCTTCAGGCTCACATTGATGATTTGGAGGCTCAGTTGGACTTGGTAAAGAAG GAAAGACTGGACTTCACATCTAGCTGTGCAATAGAAGCCGGAAGGATAGTTGAAGAAGTT GAAGCAGAAACGCAGAAGTTGGATCAGGTTGAAAGAGAGGCGGCGGACTTCCTGAAGGCG TCCAAGGCCAAATTACAGGAAACAATCGCACAAACTGAGGAAGAAGTGCAGCTGTGTGCC CATGAACTCTTTGCTGTTGTTGATTCAGTTTCAAAATATAAAGAGTATATTACATCAAAA GTTGGCATGATGAAGAATGATCTCGCAGAAGCTGCCGGGACTATAGCAGATCTGCATAAA GCTGGTTTGCCTGTCTCTGACGCAAACCACTGA

Peptide Sequence

PEP ID	Solyc01g104570.3.1
PEP Infomation	Kinetochore protein Ndc80 (AHRD V3.3 *** A0A103Y3D6_CYNCS)
Sequence	MRGAGRRRTNSAVPDRRHPPPTPINDPRQFISTGGRDSDASFASSRPSSAGVNTRSSAIP ISDRSYQLSALRTINAYLSSHSLPFTLKHPLPSAKDITETLKFILSRFGFSLAESHKLED DLQTLLKSLNCPVKLNKSALRAPGTPHSWPSLLAAIHWLVQLCKFDDYRMSSAQPLAPSN KELRYTVESYLHYFRGKDDQVDELDRQFMQELEQHKERLVEDVNVLEENVKAQEEKLEEM KTGPSERETLEKEKKNEELKKRVEEQGINSRDADRMKRELHALERDIGDIENQRIEWEEK AWDLDSAIGNMYKKLEELMIECNQSIRRLKLGNEFQYQLNPQGSSPAEVLGINYKKTLKP TLASFEDEMKKSSMGKMEELIYLQQQSSEKAMKLESKRNRLATLQAHIDDLEAQLDLVKK ERLDFTSSCAIEAGRIVEEVEAETQKLDQVEREAADFLKASKAKLQETIAQTEEEVQLCA HELFAVVDSVSKYKEYITSKVGMMKNDLAEAAGTIADLHKAGLPVSDANH*

Transcript Sequence

Transcript ID	Solyc01g104570.3.1
Transcript Infomation	Kinetochore protein Ndc80 (AHRD V3.3 *** A0A103Y3D6_CYNCS)
Sequence	ATGAGAGGCGCCGGACGCCGTCGTACCAATTCTGCAGTGCCGGATCGCCGTCATCCACCA CCGACTCCGATAAACGACCCAAGGCAATTTATCTCCACTGGCGGGCGTGATTCCGACGCA AGCTTCGCCAGTAGCCGGCCTTCATCTGCCGGTGTAAACACTCGGTCCTCCGCTATCCCC ATCTCTGACCGCTCCTATCAACTCTCTGCTCTGCGTACAATCAATGCTTACCTTTCCTCC CACTCTCTCCCTTTTACTCTCAAACATCCTCTCCCTTCTGCAAAAGATATCACCGAAACC CTAAAATTCATTCTCTCTCGTTTCGGATTTTCCTTAGCAGAGTCGCATAAACTCGAAGAT GATCTCCAAACCCTACTGAAATCCCTAAATTGCCCCGTGAAATTGAACAAATCTGCATTA CGCGCCCCTGGGACGCCTCATTCCTGGCCTAGTCTACTTGCAGCAATTCACTGGCTTGTT CAGCTATGTAAATTTGATGATTACCGGATGAGTTCGGCTCAACCACTAGCTCCGAGTAAT AAGGAATTGAGATATACTGTAGAGAGTTATTTGCATTACTTTAGGGGGAAAGATGATCAA GTAGATGAATTGGATCGCCAATTTATGCAAGAGTTGGAACAACATAAGGAGCGGTTGGTT GAGGATGTGAATGTCTTGGAGGAGAATGTGAAGGCTCAAGAGGAAAAGTTGGAAGAAATG AAGACAGGACCATCGGAAAGAGAGACGTTGGAGAAGGAGAAGAAGAATGAGGAGTTGAAG AAGAGGGTGGAGGAACAAGGGATTAATTCCAGGGATGCAGATAGGATGAAGAGGGAGTTG CATGCTTTGGAAAGGGATATTGGGGATATTGAGAACCAGAGGATTGAATGGGAGGAGAAG GCTTGGGACCTCGACTCTGCGATTGGGAACATGTACAAGAAGCTTGAGGAGCTAATGATT GAGTGCAACCAATCTATCAGGAGGTTAAAGCTTGGAAATGAATTTCAGTATCAATTGAAT CCCCAAGGGTCCTCACCAGCAGAGGTATTAGGTATAAATTACAAAAAAACATTAAAGCCC ACTCTTGCATCCTTTGAAGATGAGATGAAAAAGAGTTCCATGGGGAAAATGGAAGAGTTG ATATATCTCCAGCAACAGTCATCTGAGAAGGCTATGAAATTAGAGTCAAAGAGGAATCGT CTGGCTACTCTTCAGGCTCACATTGATGATTTGGAGGCTCAGTTGGACTTGGTAAAGAAG GAAAGACTGGACTTCACATCTAGCTGTGCAATAGAAGCCGGAAGGATAGTTGAAGAAGTT GAAGCAGAAACGCAGAAGTTGGATCAGGTTGAAAGAGAGGCGGCGGACTTCCTGAAGGCG TCCAAGGCCAAATTACAGGAAACAATCGCACAAACTGAGGAAGAAGTGCAGCTGTGTGCC CATGAACTCTTTGCTGTTGTTGATTCAGTTTCAAAATATAAAGAGTATATTACATCAAAA GTTGGCATGATGAAGAATGATCTCGCAGAAGCTGCCGGGACTATAGCAGATCTGCATAAA GCTGGTTTGCCTGTCTCTGACGCAAACCACTGA