Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g103560.3.1
CDS Infomation

tRNA pseudouridine synthase (AHRD V3.3 *** K4B1T1_SOLLC)
Sequence

ATGTCAAACGATCAATTACAGCCGTTGATCTCGGAGACTAATAAACACTCGCTCGATCAA
CGGCCGGAATCTCCCCAACGGCCGTCGAAACTGCCCAAGGTAAACGACGACGGCGGCAAC
GACGTTGTTGAAGGAGAAGAGCAGAAAGAGTCAGTTACTAGAACAATGAATCCTAATCCT
AGGCTACAGCGGTACCTGCTAGCAATTGAGTACATAGGAACTCGCTTCGCCGGTGCTCAG
CAACAACCTAATTGCAGAACTGTAGTCGGTGTTCTTCAGGAAGCCTTCCAGAAGTTCATT
GGACAGCCAGTATCAGTATTTTGCTCGAGTCGAACTGATGCTGGAGTACATGCTTTATCA
AATGTTTGCCATGTAGATGTTGAAAGGATAAGCAAAAGGAAACCTGGTGATGTGTTACCT
CCTCATGAACCTCTGGTGGTAAAAAGAGCTGTGAACCACTTTTTACAGAAGAACGCGGGT
GATATAATGGTTATTGACGTTCGGTGTGTTCCAGACGATTTTCATGCCAGATACAAAGCT
CAAGAACGCACGTACTTCTACCGATTGTTATCTGGACCGGAGCCAGTATCTAGCTTTGAG
AGGGACCGGGCTTGGCATGTGCCTGAGAATCTGGATCTTCTTGCCATGCAGAAAGCATGT
AACATTCTTATTGGACGTCATGACTTCAGTTCTTTCAGAGCAGCTGCTTGTCAGGCCAAC
TCACCCATCAGAACTCTGGATGAACTTAATGTTATTGAGGTCGTTTCAACTCCTTTTTTT
CCGTCAATCTCAGAGAGACTAAAGAGCAGTAGTGTCATGGAGGATCCAACTGTATACTTG
GGTTCAGACACCAACCACTCCCAAATCTCTTTTAACACCAATGAAGGAAAGTTGGAAGGT
TCAAACGGTGAGGCTTGTCAAGAATTTGGCCTTAGAAGAAGACACCGTTGCTTCGTGGTA
ACCGCAAGGGCACGATCTTTTCTTTACCATCAGGTTAGGCTGCTTGTTGGAGTCCTTAAG
TCAGTTGGGGCTGGTGATCTGACAGATCCAGATGTAAAACGCATCCTTGAAGCAAAATCC
ATTGCTGCAGCACCCCCGATGGCTCCTGCTTGTGGTCTTTATCTTGGACATGTCAAATAT
GATTTGCCTCCCGAGAATAATCAAAGCTAA

Peptide Sequence

PEP ID

Solyc01g103560.3.1
PEP Infomation

tRNA pseudouridine synthase (AHRD V3.3 *** K4B1T1_SOLLC)
Sequence

MSNDQLQPLISETNKHSLDQRPESPQRPSKLPKVNDDGGNDVVEGEEQKESVTRTMNPNP
RLQRYLLAIEYIGTRFAGAQQQPNCRTVVGVLQEAFQKFIGQPVSVFCSSRTDAGVHALS
NVCHVDVERISKRKPGDVLPPHEPLVVKRAVNHFLQKNAGDIMVIDVRCVPDDFHARYKA
QERTYFYRLLSGPEPVSSFERDRAWHVPENLDLLAMQKACNILIGRHDFSSFRAAACQAN
SPIRTLDELNVIEVVSTPFFPSISERLKSSSVMEDPTVYLGSDTNHSQISFNTNEGKLEG
SNGEACQEFGLRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTDPDVKRILEAKS
IAAAPPMAPACGLYLGHVKYDLPPENNQS*

Transcript Sequence

Transcript ID

Solyc01g103560.3.1
Transcript Infomation

tRNA pseudouridine synthase (AHRD V3.3 *** K4B1T1_SOLLC)
Sequence

GAAAGTAAAGTGTATGTAAATTTTATCTTAATTTTAAGAGATAGAAAAATTCCTGGAAAA
AGTAATTGAATATGAAAACGTGAGTTATGATAAAGTATGTGTATGTTGATGATATGAAAT
GAAAATTTGATTCAATTAAATTGATAAAAAAATTAATTATTGGTTTAAAGAAATCATTAT
CAAATTGATATTGCATAGAAATTGAATCGAATTAATATATTAATTTGATTTTTTCCCTCA
AAATATTTAATTTTTTTTTAAAAAAAGGAGAAGTACACAGCCATAATTCCCTTAAACCCT
CGTTGCATTTCTAACGCTCAGAACTACACAGCTCGGCAATGTCAAACGATCAATTACAGC
CGTTGATCTCGGAGACTAATAAACACTCGCTCGATCAACGGCCGGAATCTCCCCAACGGC
CGTCGAAACTGCCCAAGGTAAACGACGACGGCGGCAACGACGTTGTTGAAGGAGAAGAGC
AGAAAGAGTCAGTTACTAGAACAATGAATCCTAATCCTAGGCTACAGCGGTACCTGCTAG
CAATTGAGTACATAGGAACTCGCTTCGCCGGTGCTCAGCAACAACCTAATTGCAGAACTG
TAGTCGGTGTTCTTCAGGAAGCCTTCCAGAAGTTCATTGGACAGCCAGTATCAGTATTTT
GCTCGAGTCGAACTGATGCTGGAGTACATGCTTTATCAAATGTTTGCCATGTAGATGTTG
AAAGGATAAGCAAAAGGAAACCTGGTGATGTGTTACCTCCTCATGAACCTCTGGTGGTAA
AAAGAGCTGTGAACCACTTTTTACAGAAGAACGCGGGTGATATAATGGTTATTGACGTTC
GGTGTGTTCCAGACGATTTTCATGCCAGATACAAAGCTCAAGAACGCACGTACTTCTACC
GATTGTTATCTGGACCGGAGCCAGTATCTAGCTTTGAGAGGGACCGGGCTTGGCATGTGC
CTGAGAATCTGGATCTTCTTGCCATGCAGAAAGCATGTAACATTCTTATTGGACGTCATG
ACTTCAGTTCTTTCAGAGCAGCTGCTTGTCAGGCCAACTCACCCATCAGAACTCTGGATG
AACTTAATGTTATTGAGGTCGTTTCAACTCCTTTTTTTCCGTCAATCTCAGAGAGACTAA
AGAGCAGTAGTGTCATGGAGGATCCAACTGTATACTTGGGTTCAGACACCAACCACTCCC
AAATCTCTTTTAACACCAATGAAGGAAAGTTGGAAGGTTCAAACGGTGAGGCTTGTCAAG
AATTTGGCCTTAGAAGAAGACACCGTTGCTTCGTGGTAACCGCAAGGGCACGATCTTTTC
TTTACCATCAGGTTAGGCTGCTTGTTGGAGTCCTTAAGTCAGTTGGGGCTGGTGATCTGA
CAGATCCAGATGTAAAACGCATCCTTGAAGCAAAATCCATTGCTGCAGCACCCCCGATGG
CTCCTGCTTGTGGTCTTTATCTTGGACATGTCAAATATGATTTGCCTCCCGAGAATAATC
AAAGCTAATAAGAAGTATTTATTAGCAGACTTGTTTGATATTCTCTGAGCGTATCTCTTG
ATCGAGCGAATTGAACAGCTTCTTATTAACAACTAGCATTGTTTGCAATGCAATGAGGTG
GATGCAAGTAGTTGGTATCAATTAGATATTTTGATTCGTTATGTTATGGTCAACCTTCAG
GAACATCTGATATAGGGAATTGAAACATATTGTGGATTGTAAAACTGATGATTATGTTGT
CATATTAAGTTTCAACTCTCCACGTGAGATGTTTCTTGAAGGTTGATGATACCACCATAC
CTTAACAAATCAAGATGCCTGTTTGTCTGTTTCCAGAAAAAACTTGATTTTGTTGTATTA
GGTTGGAGAGAAAACAGAAGGCAATACTAGTCTAGGATGTAGTTCTACACCAACTTTCAT
TGTTACAGTTCATGTAATCTGGATGTACATGAATCAAACATGCTGGTGTCATTTATGCAC
TTATTTCCTGTTAATTTTACCTTTGCTTCCGATGTTATGCTATATTAGTTGTTATTTCAA
TTACCTTTGGTTCTGCAAATGGCTTGGCAATTTCAAATTTGTCTCCTTGATACAAAGATA
ATTGCAGTAGCCATTAAGGTTACAAACGCTCAACTGAAGAGGGTTCTTGAATAGTAAATG
CCAGACAATCTAGTCCTGATTCTTGTGTTTACAATCTAATGGGAGAGTTTATTACCCTCA
ACATACATTATACAACTCGACCTACAGTACACCTCCACAACCGAAAAAAAAAGAACTTTG
GATTCACATATTCATCAGTCAATAAAAAACCTACTTCATCAGCATGGAAATAGCTGAACG
AATGGAGCTCTTGCGAGTGGTGGAACCCCCACGCTTAACCAGTGAATGTGGTCCATTCCA
GACAGATCTTTGATCATCAGCAAACAGAACTCGAGATAAATCCATAGCTGTTGTATTTTC
AAGATAACGCAAGTTCTCCCACATCTTGGCCTTCTTGTACTTGTCTTGCAATTCCTGCTC
AAAATTTCACCACCCAAAACAGAGTTACAACACAATGGAAGTTGAAAGATACTGAATTTT
GTTTACTGTAAAACCTGGTATAATAGACGGATGAAAAACATTATTTCCAGCTCAGTTTTT
TCCAAACAGAAAAATAAAATGTTTCAGATTTCACTGGATTGGTTCAAGTGGCAGTAGCTC
AGATAGCGTTATGCACTTGACATGGATTTCTACTCCAGAAATTCATTCATGCAAATTTTC
AATTTTAGCATATATGTTTCTTCAGTTTGTTTCAATAGCTGTAAATTAGTGGCTGCCATT
CAAGTAGGAATATGCAATTTCACGAATAATAAGGTATTGAAGAATGAACAGATATATGAT
GAACCAGGTACTAGAACAAGCCTTTTCATACTGGAAACAAAGGTATAAACAATACTTATC
GCAGAGTATTTGCTTTCAATTGCTTACCTTTGGCCTCTGCAGCCCAGTTACAGCATTTTC
ATTCCCATGCTGCAGATTTTCTTTTCCACCGTCATTCAGCAATTCTCGACCTGGCTCCCC
ATTTTGCTTCTGATCATGTGCTTTGTGCTCATCTAAAGATGTATAACCTGACTGCAAATG
CTCAGAAGTGACCCCCGTTCTTTTACTTTGGATTCCCATTTCACTCCTCATCTCTTCCCC
TAGCTTCTCACATAAAGCGTCCTGATTTTCAGACAACTTTCTCTCTGCTCCTTTTTCTTG
CATAATGGTGTCAACATCTGTCTCTGGTGAATTCTCCACATTTGATGAGGTGTATTCTCG
ACTTTCTACAGGTGAAGTTTCCTTTTCAGAAAGAAAATGGAGAAACAACAGTTAGAAAGG
AAATTGTATCAACACTATCAGAATGGTCACAAAAAAATTGGAAACAGAATAACATCTCTA
TGCTCAAGTCATTAAACAAATATTTAATGCGGAGATCCATTTAAACCAAGATTCTTATGT
CTCCCTCCATCCCATATTAGTTGATCACTTTTCATTTGCACAATGCTAA