Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc01g102950.3.1
CDS Infomation	Lycopene beta/epsilon cyclase (AHRD V3.3 *** A0A072TS21_MEDTR)
Sequence	ATGGCGCTTCAGCTTCAGCTGCAAACAACTGTGAGAAATGGAGTCTTTCAGTACCCTTCT GCAATTAGACCTTTCGGGAATAGAAAAAGAGTTTCTTTTCAAGCACAAGCCACTCCTACA AGAACACAGAGGATAATGGAGGGAATTGCAGTAAGTGGGGAGGTTGGTGGCGCTGGTGGT GCATACTCATATACTGCATTGAAAAGATTGGACCAGTTGTTGTCTAAAATTTGCTCTGCT TCAGCAGTTGTTGAAGAGCCCCAGAAAGTTGTTTTCTCTGTCCCCGGATCATACAAAGAT TCTGAGCATGTTGGAAATTCGGAGGAAATGTTTGATGTCATCGTTTGTGGAGGTACTTTG GGAATCTTCATTGCCACAGCATTAAGTTCCAAAGGTCTTCGAGTTGGAGTTGTGGAAAGG AATGTTTTAAAAGGGAGGGAGCAAGAGTGGAACATATCAAGGAAAGAGTTACTGGAACTT GTTGAAGTTGGCGTTTTAACTGAAGATGACATTGAAGAGGCTACTGCAGCCAGTTTCAAT CCTAATAGATGTGGATTTGAAGGGAAGGGAGACATTTGGGTCCAGGGCATTCTCAATCTT GGTGTTTCGCCAGTAAAGCTTGTGGAGATTGTGAAAGACCGTTTTGATTCCCTTGGAGGT GTCACATTTGAAGGTTACAGCGTCTCTAACATATCCGTCTATCAGGATGCAGCAGTCTTG CAACTAAAGGAGGGGAAGACTTTATTCTCGCGTCTTATCATTGATGCAATGGGGAATTTT TCTCCTATTGTAAAGCAGATTAGATGTGGAAGGAAACCAGATGGTATGTGCCTTGTGGTT GGGACTTGCTGCCGTGGTTTTAAGGAGAACTCTACAAGTGATGTCATATTTAGCAGTGCT ACCGCAAAGGAAGTTGGCCAGTCACTAGTCCAATATTTCTGGGAGGCATTTCCTGCTGGC TCGGGTCCCATAGACCGAACCACTTATATGTTCACTTATGTTGATCCTCAACCCGGATCT CCACAGCTGGAAGAGTTACTAGAAGATTACTGGGATCTGATGCCAAAGTATCAGGGCGTG TCTTTCGACGATCTGGAAATCTTGAGGATAATATTTGGTATTTTCCCAACATATAGAGAC AGTCCATTGCCAGCAGCGTTTGATCGTATTTTACAGTTTGGGGATGCTAGTGGCATACAG TCACCGGTTTCTTTTGGTGGTTTTGGGAGCTTGACTAGGCACCTGGGGAGATTGACAACT GGTATATATGAGGCACTTGAAGGCAATTTTCTGGACTCTAAAAGCTTGTCAATGTTGAAT CCTTACATGCCGAACTTGAGCTCTTCCTGGTTATTTCAAAGGGCAATGTCAGCAAAAAAA CAGTCCAACGTTCCACCAGATTTTATTAATGAACTTCTTTCTGCCAATTTCATAAGTATG AAGAAACTAGGGGATCCTGTCTTGAGACCTTTTCTTCAGGATGTTATACAGTTTGGGCCT CTTGTGAAAACACTAGGTCTTATAACGTTAACGAGACCTCAGATTATTCCATCAATATTC AAGCAGGTCGGAATTCCTGTGCTTCTTGAATGGTTTGGACATTTTATCATGCTGGGATAC TATACATTTCTCTCTACCTTCCTCGACCCTACCATTAGGCCATTGATAGAATCATTTCCA GCCAAGATGAGATATGAATGGAAACGCGGACTTGAAGCTTGGCAATATGGAGCTGGTTTA GACTACAAACAGAGTCCCTCTGAAGCTCACGAGGCGGCTAATAGATCAGATCCTAGTAAA GAAACTTTCAGTACCAACAGCCATCCATGA

Peptide Sequence

PEP ID	Solyc01g102950.3.1
PEP Infomation	Lycopene beta/epsilon cyclase (AHRD V3.3 *** A0A072TS21_MEDTR)
Sequence	MALQLQLQTTVRNGVFQYPSAIRPFGNRKRVSFQAQATPTRTQRIMEGIAVSGEVGGAGG AYSYTALKRLDQLLSKICSASAVVEEPQKVVFSVPGSYKDSEHVGNSEEMFDVIVCGGTL GIFIATALSSKGLRVGVVERNVLKGREQEWNISRKELLELVEVGVLTEDDIEEATAASFN PNRCGFEGKGDIWVQGILNLGVSPVKLVEIVKDRFDSLGGVTFEGYSVSNISVYQDAAVL QLKEGKTLFSRLIIDAMGNFSPIVKQIRCGRKPDGMCLVVGTCCRGFKENSTSDVIFSSA TAKEVGQSLVQYFWEAFPAGSGPIDRTTYMFTYVDPQPGSPQLEELLEDYWDLMPKYQGV SFDDLEILRIIFGIFPTYRDSPLPAAFDRILQFGDASGIQSPVSFGGFGSLTRHLGRLTT GIYEALEGNFLDSKSLSMLNPYMPNLSSSWLFQRAMSAKKQSNVPPDFINELLSANFISM KKLGDPVLRPFLQDVIQFGPLVKTLGLITLTRPQIIPSIFKQVGIPVLLEWFGHFIMLGY YTFLSTFLDPTIRPLIESFPAKMRYEWKRGLEAWQYGAGLDYKQSPSEAHEAANRSDPSK ETFSTNSHP*

Transcript Sequence

Transcript ID	Solyc01g102950.3.1
Transcript Infomation	Lycopene beta/epsilon cyclase (AHRD V3.3 *** A0A072TS21_MEDTR)
Sequence	AAAACCTGACGGAAAGAATCTTTGTTTTTTTGATTCTTGAATTATTATCACAATGGCGCT TCAGCTTCAGCTGCAAACAACTGTGAGAAATGGAGTCTTTCAGTACCCTTCTGCAATTAG ACCTTTCGGGAATAGAAAAAGAGTTTCTTTTCAAGCACAAGCCACTCCTACAAGAACACA GAGGATAATGGAGGGAATTGCAGTAAGTGGGGAGGTTGGTGGCGCTGGTGGTGCATACTC ATATACTGCATTGAAAAGATTGGACCAGTTGTTGTCTAAAATTTGCTCTGCTTCAGCAGT TGTTGAAGAGCCCCAGAAAGTTGTTTTCTCTGTCCCCGGATCATACAAAGATTCTGAGCA TGTTGGAAATTCGGAGGAAATGTTTGATGTCATCGTTTGTGGAGGTACTTTGGGAATCTT CATTGCCACAGCATTAAGTTCCAAAGGTCTTCGAGTTGGAGTTGTGGAAAGGAATGTTTT AAAAGGGAGGGAGCAAGAGTGGAACATATCAAGGAAAGAGTTACTGGAACTTGTTGAAGT TGGCGTTTTAACTGAAGATGACATTGAAGAGGCTACTGCAGCCAGTTTCAATCCTAATAG ATGTGGATTTGAAGGGAAGGGAGACATTTGGGTCCAGGGCATTCTCAATCTTGGTGTTTC GCCAGTAAAGCTTGTGGAGATTGTGAAAGACCGTTTTGATTCCCTTGGAGGTGTCACATT TGAAGGTTACAGCGTCTCTAACATATCCGTCTATCAGGATGCAGCAGTCTTGCAACTAAA GGAGGGGAAGACTTTATTCTCGCGTCTTATCATTGATGCAATGGGGAATTTTTCTCCTAT TGTAAAGCAGATTAGATGTGGAAGGAAACCAGATGGTATGTGCCTTGTGGTTGGGACTTG CTGCCGTGGTTTTAAGGAGAACTCTACAAGTGATGTCATATTTAGCAGTGCTACCGCAAA GGAAGTTGGCCAGTCACTAGTCCAATATTTCTGGGAGGCATTTCCTGCTGGCTCGGGTCC CATAGACCGAACCACTTATATGTTCACTTATGTTGATCCTCAACCCGGATCTCCACAGCT GGAAGAGTTACTAGAAGATTACTGGGATCTGATGCCAAAGTATCAGGGCGTGTCTTTCGA CGATCTGGAAATCTTGAGGATAATATTTGGTATTTTCCCAACATATAGAGACAGTCCATT GCCAGCAGCGTTTGATCGTATTTTACAGTTTGGGGATGCTAGTGGCATACAGTCACCGGT TTCTTTTGGTGGTTTTGGGAGCTTGACTAGGCACCTGGGGAGATTGACAACTGGTATATA TGAGGCACTTGAAGGCAATTTTCTGGACTCTAAAAGCTTGTCAATGTTGAATCCTTACAT GCCGAACTTGAGCTCTTCCTGGTTATTTCAAAGGGCAATGTCAGCAAAAAAACAGTCCAA CGTTCCACCAGATTTTATTAATGAACTTCTTTCTGCCAATTTCATAAGTATGAAGAAACT AGGGGATCCTGTCTTGAGACCTTTTCTTCAGGATGTTATACAGTTTGGGCCTCTTGTGAA AACACTAGGTCTTATAACGTTAACGAGACCTCAGATTATTCCATCAATATTCAAGCAGGT CGGAATTCCTGTGCTTCTTGAATGGTTTGGACATTTTATCATGCTGGGATACTATACATT TCTCTCTACCTTCCTCGACCCTACCATTAGGCCATTGATAGAATCATTTCCAGCCAAGAT GAGATATGAATGGAAACGCGGACTTGAAGCTTGGCAATATGGAGCTGGTTTAGACTACAA ACAGAGTCCCTCTGAAGCTCACGAGGCGGCTAATAGATCAGATCCTAGTAAAGAAACTTT CAGTACCAACAGCCATCCATGAAATTTCCCAGTACATTATTAGCAGCAGTTAAGAGTATG AATGTATATGCTATAATAACCAGCTGCTGTAGCCAGTGAATCAATTCTCACATTACCTTT ATTACAGTAAATACCATCTTTTTCTTCTTTTTTTTGCCTACTGAAATATTTGTAACATAA AAGCCATTTAACTATTGTGAGTTCACTTTTAAAATCACTCAATTAGCTTAAACTATGTTT TTGATAAATTATTAATTTTAAATTAAGTTGGTTACAATTTTGTAGATGAAATAGATACAG TTGAGCGTTTTTGTACGCGAATGAAAATAATTGGGTGATTTTCTGTTACAAATAAAGTCA TTTATTTTTTAGATGCTTATCATTAATGGAGCTAATTTCACGTCATAAAATAAAATTAAG TGATTT