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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g100980.3.1
CDS Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G02460.1)
Sequence

ATGGAATTCACTAGATTTTGCTTCTTGGTTTTTTCTGTTTTCTTGATTTCCTATGTTTTT
TCAGTTCATGGTAGGTTTTATGATTACCCCAAAGTGTCGCGTTTTCGTGCATTGTCACAA
ATATCAATGCCACCTTTCCCTGCCCCTGCCCCTGGCCCTGGCCCTGCCCCTGCTCCTGAA
CCTAAGGGTGATCCAAAAACTGAGAATGTGAAGAATTCATCAAATGATTATGCAGCAGGC
ATTTTCAATGTGTTGTCTTATGGGGCTGTTGGTGATGGTGTGATAGACGATACACAAGCG
TTTAAGATGGCTTGGGATACTGCTTGTCAAGTTGATTCAGCTATTCTACTAGTTCCAAAA
CACTATTCTTTCATGATCCAATCCACAATCTTCACTGGTCCTTGCAAAAGTGGACTAATT
TTTAAGGTTGAAGGAACCATTATGCCACCAGATGGACCTGATTCATGGCCAAAAGGTGTC
AGTAAGAAACAATGGTTAGTCTTTTACAGAATTGATGGGATGTCAATGCAAGGTGGTGGA
CTCATAGATGGTAAAGGAGAAAAATGGTGGAATCTTCCGTGCAAACCACATAAACAGGGG
ATAAATGGAACAACACTACCTGGCCCTTGTGACAGCCCTGTGGCTATAAAGTTTTTCATG
AGCTCAAATTTGACAGTGCAAGGGCTTAAAATCAAGAACAGCCCACTGTTCCATTTCAGA
TTTGACAGTTGCCGCGGTGTCCATGTTGACTCGCTTTACATAAAAGCACCACGTCAGAGC
CCCAATACTGATGGAATTCACATAGAGAATACCAATGATGTCACAATAAGAAACTCAATA
ATCTCCAATGGTGATGACTGTATTTCAATTGGAGCTGGTTGTTACAATGTTGATATAAGG
AACATGACCTGTGGTCCAAGTCATGGAATAAGCATTGGCAGTCTAGGCATTCGCAATTCC
CGGGCATGTGTATCCAACATTACAGTGGAAGATTCAACTATTAAGTATTCAGACAATGGT
GTTAGGATCAAGACATGGCAAGGAGGATTTGGGACAGTATCCAACATTAATTTCAACAAC
ATTAGAATGGAAAGTGTTCGAAATCCGATAATTTTAGATCAATATTACTGCAGCACAAAG
AGCTGTGCAAATCAGACTTCAGCAGTGTACATATCTGATGTGATTTATTCAAACATAAAG
GGTACTTATGATGTGAGAAGTCCACCAATGCATTTGGCTTGTAGTAACAGTGTCCCTTGC
ACAAATTTGACTTTTTTGGATGTGGAGTTATATCCTGCTCAAGGACAAAAAATCTTGGAA
CCATTTTGTTGGAATGCTTATGGTGCTCTAATTACTCTTACAATTCCACCAGTTTTTTGC
TTGTTGGAAGGCACACCTCAGTCATTACCAAGTAATGATCTTGATCAATGCTGA

Peptide Sequence

PEP ID

Solyc01g100980.3.1
PEP Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G02460.1)
Sequence

MEFTRFCFLVFSVFLISYVFSVHGRFYDYPKVSRFRALSQISMPPFPAPAPGPGPAPAPE
PKGDPKTENVKNSSNDYAAGIFNVLSYGAVGDGVIDDTQAFKMAWDTACQVDSAILLVPK
HYSFMIQSTIFTGPCKSGLIFKVEGTIMPPDGPDSWPKGVSKKQWLVFYRIDGMSMQGGG
LIDGKGEKWWNLPCKPHKQGINGTTLPGPCDSPVAIKFFMSSNLTVQGLKIKNSPLFHFR
FDSCRGVHVDSLYIKAPRQSPNTDGIHIENTNDVTIRNSIISNGDDCISIGAGCYNVDIR
NMTCGPSHGISIGSLGIRNSRACVSNITVEDSTIKYSDNGVRIKTWQGGFGTVSNINFNN
IRMESVRNPIILDQYYCSTKSCANQTSAVYISDVIYSNIKGTYDVRSPPMHLACSNSVPC
TNLTFLDVELYPAQGQKILEPFCWNAYGALITLTIPPVFCLLEGTPQSLPSNDLDQC*

Transcript Sequence

Transcript ID

Solyc01g100980.3.1
Transcript Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G02460.1)
Sequence

ATGGAATTCACTAGATTTTGCTTCTTGGTTTTTTCTGTTTTCTTGATTTCCTATGTTTTT
TCAGTTCATGGTAGGTTTTATGATTACCCCAAAGTGTCGCGTTTTCGTGCATTGTCACAA
ATATCAATGCCACCTTTCCCTGCCCCTGCCCCTGGCCCTGGCCCTGCCCCTGCTCCTGAA
CCTAAGGGTGATCCAAAAACTGAGAATGTGAAGAATTCATCAAATGATTATGCAGCAGGC
ATTTTCAATGTGTTGTCTTATGGGGCTGTTGGTGATGGTGTGATAGACGATACACAAGCG
TTTAAGATGGCTTGGGATACTGCTTGTCAAGTTGATTCAGCTATTCTACTAGTTCCAAAA
CACTATTCTTTCATGATCCAATCCACAATCTTCACTGGTCCTTGCAAAAGTGGACTAATT
TTTAAGGTTGAAGGAACCATTATGCCACCAGATGGACCTGATTCATGGCCAAAAGGTGTC
AGTAAGAAACAATGGTTAGTCTTTTACAGAATTGATGGGATGTCAATGCAAGGTGGTGGA
CTCATAGATGGTAAAGGAGAAAAATGGTGGAATCTTCCGTGCAAACCACATAAACAGGGG
ATAAATGGAACAACACTACCTGGCCCTTGTGACAGCCCTGTGGCTATAAAGTTTTTCATG
AGCTCAAATTTGACAGTGCAAGGGCTTAAAATCAAGAACAGCCCACTGTTCCATTTCAGA
TTTGACAGTTGCCGCGGTGTCCATGTTGACTCGCTTTACATAAAAGCACCACGTCAGAGC
CCCAATACTGATGGAATTCACATAGAGAATACCAATGATGTCACAATAAGAAACTCAATA
ATCTCCAATGGTGATGACTGTATTTCAATTGGAGCTGGTTGTTACAATGTTGATATAAGG
AACATGACCTGTGGTCCAAGTCATGGAATAAGCATTGGCAGTCTAGGCATTCGCAATTCC
CGGGCATGTGTATCCAACATTACAGTGGAAGATTCAACTATTAAGTATTCAGACAATGGT
GTTAGGATCAAGACATGGCAAGGAGGATTTGGGACAGTATCCAACATTAATTTCAACAAC
ATTAGAATGGAAAGTGTTCGAAATCCGATAATTTTAGATCAATATTACTGCAGCACAAAG
AGCTGTGCAAATCAGACTTCAGCAGTGTACATATCTGATGTGATTTATTCAAACATAAAG
GGTACTTATGATGTGAGAAGTCCACCAATGCATTTGGCTTGTAGTAACAGTGTCCCTTGC
ACAAATTTGACTTTTTTGGATGTGGAGTTATATCCTGCTCAAGGACAAAAAATCTTGGAA
CCATTTTGTTGGAATGCTTATGGTGCTCTAATTACTCTTACAATTCCACCAGTTTTTTGC
TTGTTGGAAGGCACACCTCAGTCATTACCAAGTAATGATCTTGATCAATGCTGATACATG
ATTTGCTAAGAAATACAAACTTGTAAAAGATGGAGTACTTAATAGTATGTATTAAAGTTT
TAGCTCTTCTAGTCTTGTTCCAGAGAGGACTAAAACTTAACTGTAAGCATGTATCCATTT
TGTTAATGATATAAAAGTAGTATATTTTAAATCAGTTTTAGAATATCTTCTGCTTTACCT
ACACTGA