Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g100800.2.1
CDS Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9I6P8_POPTR)
Sequence

ATGAATGCAAGAAAGCTAGTTTCCCAAACTCATTGTACTCAAATTCCTCAAACTATCAAG
AACTCTCTTCTTTGTGCTGCAATCGACCCACCCCATTCAAACCCACCATTTTTACCCAAG
CCTCCTTCTATATTAGCCACTGGTCTTCTCAAATCTTATTTTGAAAGGGGTCTGATTAGA
GAAGCACGTACGCTGTTCGATGAAATGCCTGAAAGAGATGTTGTTGCTTGGACGACCATG
ATTTCTGGATACACTTCATGTAATCTTCATGGACGTGCTTGGGTGGTTTTCTGTGACATG
ATGAGGTTTACGGACGTGCGCCCCAACGAGTTCACCTTATCTTGTACGTTGAAGGCTTGT
AAAGGGATCAATTCATACTCTCATGGAGCTTTGCTTCATGGTTTGGTTATGAAGCAAGGC
ATGGGTGGAAGTATTTATGTTTCTAATGCACTCTTGGATGTCTATGCGACGTGTTGTGTT
AATATGGATGAAGCATCCGCGGTTTTTCAGGAGATTAGAGAGAGAAATGATGTGTCTTGG
ACTACATTCATTGCGGGATATACTCATCGTGGTGATGGTTATATGGGGCTTAGTGTTTTT
AGAAGAATGTTATCGGAAGGGGGTGAATCAAACCCATTTAGCTTTTCAATAGCAGTCAGA
GCTTGTGCCTCGGTCCATTCATGTACATATGGGAAGCAACTTCATGCTGCAATCGCCAAG
CATGGATTGGACTTTAATCTACCTGTAATGAATTCTATTTTAGATATGTATTGTAGGTGT
AACAGCTTAAATGATGCAAAGCAATGCTTCAATGAAATGACTCAAAGGGATTTAATCACA
TGGAACACTTTGATTGCTGGATATGAGAAGTCTGATCCATATGTATCTATCAGCACATAC
TCTTGTATGGAGCTTGAAGGTCTCAGCCCTAATTGCTTCACATTTTCCAGCATTGTAGCA
GCTGTGGCCAATTTGGCAATTTTGAGTTGTGGAGAGCAGATTCATGGAAGAATCTTAAAG
AGAGGCCTCGGAGGGAACTTGGAATTGGACAATGCCTTAATAGACATGTACGCAAAGTCT
GGAAATATTGGAAGTGCACGTAGAATTTTTGATAAAATGCCCACGAAAAATCTGGTTTCG
TGGACCTCAATGATGATTGGTTATGGAAGCCATGGATATGGAAATGAAGCTGTTGACTTT
TTTGAAGAGATGGTTAAATTTAGAGTCAGGCCAGATAGGATAGCGTTTGAGGCAGTTTTA
AATGCATGTAGTCATGCTGGGCTTGTAGATAAAGGTGTAAGGTATTTTATGTCAATGGTT
GATGATTACAACATAGCTCCTGATCCGGAGATTTTTGGGTGTTTAGTAGATTTGCTAGGA
CGCGCTGGAAGAGTTGAGGAGGCTTTTAAGTTGATAGAGAGTATGCCATTTGATCCCGAT
GAATCTGTTTGGGGAACACTCCTAAGAGCATGTAAAGCACACAATCATCCAGATTTGGGC
ACGCTGGCCATAAGAAAGGTGTTGGCATTGAAGCCAAAAATTGCAGCAACTTATGTAATT
CTATCAAATATCTATGCAGCTGACGGTAAATGGGGTGACTCTGCAAAAATGAGGAAGTTG
ATGAGAAGGATGGCTACCAAGAAAGAGGCAGGGAGAAGTTCAGTAGAGATAAAGAATCAG
AACTATAGTTTTGTTGCTGGAGATAAAATGGGTCCACATATGGATTGTGTAGATGAAGTT
GTAAAAATCCTGGTCGAACATATGAGACACGCACGATATATTCCTGATTTGGACTTCTTT
ATACATGATTTAGAAGATGGAATTTGA

Peptide Sequence

PEP ID

Solyc01g100800.2.1
PEP Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9I6P8_POPTR)
Sequence

MNARKLVSQTHCTQIPQTIKNSLLCAAIDPPHSNPPFLPKPPSILATGLLKSYFERGLIR
EARTLFDEMPERDVVAWTTMISGYTSCNLHGRAWVVFCDMMRFTDVRPNEFTLSCTLKAC
KGINSYSHGALLHGLVMKQGMGGSIYVSNALLDVYATCCVNMDEASAVFQEIRERNDVSW
TTFIAGYTHRGDGYMGLSVFRRMLSEGGESNPFSFSIAVRACASVHSCTYGKQLHAAIAK
HGLDFNLPVMNSILDMYCRCNSLNDAKQCFNEMTQRDLITWNTLIAGYEKSDPYVSISTY
SCMELEGLSPNCFTFSSIVAAVANLAILSCGEQIHGRILKRGLGGNLELDNALIDMYAKS
GNIGSARRIFDKMPTKNLVSWTSMMIGYGSHGYGNEAVDFFEEMVKFRVRPDRIAFEAVL
NACSHAGLVDKGVRYFMSMVDDYNIAPDPEIFGCLVDLLGRAGRVEEAFKLIESMPFDPD
ESVWGTLLRACKAHNHPDLGTLAIRKVLALKPKIAATYVILSNIYAADGKWGDSAKMRKL
MRRMATKKEAGRSSVEIKNQNYSFVAGDKMGPHMDCVDEVVKILVEHMRHARYIPDLDFF
IHDLEDGI*

Transcript Sequence

Transcript ID

Solyc01g100800.2.1
Transcript Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9I6P8_POPTR)
Sequence

CGTGATTTAACCAGGGTTATTTTATCAAAATTATTAAAAAACAGCTAAACATCGAAGGGT
TAACCTTCATAACTAGAAGTTTGAACTTCCTTCCGACTTATAAATTAGAAAATAATCAGC
GACTTGTACAAATGAAGCACATTTTAATACTATTATACATAATGAATCAAAGACTTGTAC
TTTCTGTGATCTAGCACATTCCTTAAATCGATTTGTGTTATTCCTAAATTTATGTTTAAG
CAATGAATGCAAGAAAGCTAGTTTCCCAAACTCATTGTACTCAAATTCCTCAAACTATCA
AGAACTCTCTTCTTTGTGCTGCAATCGACCCACCCCATTCAAACCCACCATTTTTACCCA
AGCCTCCTTCTATATTAGCCACTGGTCTTCTCAAATCTTATTTTGAAAGGGGTCTGATTA
GAGAAGCACGTACGCTGTTCGATGAAATGCCTGAAAGAGATGTTGTTGCTTGGACGACCA
TGATTTCTGGATACACTTCATGTAATCTTCATGGACGTGCTTGGGTGGTTTTCTGTGACA
TGATGAGGTTTACGGACGTGCGCCCCAACGAGTTCACCTTATCTTGTACGTTGAAGGCTT
GTAAAGGGATCAATTCATACTCTCATGGAGCTTTGCTTCATGGTTTGGTTATGAAGCAAG
GCATGGGTGGAAGTATTTATGTTTCTAATGCACTCTTGGATGTCTATGCGACGTGTTGTG
TTAATATGGATGAAGCATCCGCGGTTTTTCAGGAGATTAGAGAGAGAAATGATGTGTCTT
GGACTACATTCATTGCGGGATATACTCATCGTGGTGATGGTTATATGGGGCTTAGTGTTT
TTAGAAGAATGTTATCGGAAGGGGGTGAATCAAACCCATTTAGCTTTTCAATAGCAGTCA
GAGCTTGTGCCTCGGTCCATTCATGTACATATGGGAAGCAACTTCATGCTGCAATCGCCA
AGCATGGATTGGACTTTAATCTACCTGTAATGAATTCTATTTTAGATATGTATTGTAGGT
GTAACAGCTTAAATGATGCAAAGCAATGCTTCAATGAAATGACTCAAAGGGATTTAATCA
CATGGAACACTTTGATTGCTGGATATGAGAAGTCTGATCCATATGTATCTATCAGCACAT
ACTCTTGTATGGAGCTTGAAGGTCTCAGCCCTAATTGCTTCACATTTTCCAGCATTGTAG
CAGCTGTGGCCAATTTGGCAATTTTGAGTTGTGGAGAGCAGATTCATGGAAGAATCTTAA
AGAGAGGCCTCGGAGGGAACTTGGAATTGGACAATGCCTTAATAGACATGTACGCAAAGT
CTGGAAATATTGGAAGTGCACGTAGAATTTTTGATAAAATGCCCACGAAAAATCTGGTTT
CGTGGACCTCAATGATGATTGGTTATGGAAGCCATGGATATGGAAATGAAGCTGTTGACT
TTTTTGAAGAGATGGTTAAATTTAGAGTCAGGCCAGATAGGATAGCGTTTGAGGCAGTTT
TAAATGCATGTAGTCATGCTGGGCTTGTAGATAAAGGTGTAAGGTATTTTATGTCAATGG
TTGATGATTACAACATAGCTCCTGATCCGGAGATTTTTGGGTGTTTAGTAGATTTGCTAG
GACGCGCTGGAAGAGTTGAGGAGGCTTTTAAGTTGATAGAGAGTATGCCATTTGATCCCG
ATGAATCTGTTTGGGGAACACTCCTAAGAGCATGTAAAGCACACAATCATCCAGATTTGG
GCACGCTGGCCATAAGAAAGGTGTTGGCATTGAAGCCAAAAATTGCAGCAACTTATGTAA
TTCTATCAAATATCTATGCAGCTGACGGTAAATGGGGTGACTCTGCAAAAATGAGGAAGT
TGATGAGAAGGATGGCTACCAAGAAAGAGGCAGGGAGAAGTTCAGTAGAGATAAAGAATC
AGAACTATAGTTTTGTTGCTGGAGATAAAATGGGTCCACATATGGATTGTGTAGATGAAG
TTGTAAAAATCCTGGTCGAACATATGAGACACGCACGATATATTCCTGATTTGGACTTCT
TTATACATGATTTAGAAGATGGAATTTGAAAAGTAACAGCAATGAGGTACTAAGTGCTTG
CTGTTATATATGTTGGCATGGTGATTTATTTTCTTCAGAAGTCATGTTGCATTCTATACA
AGAGGGGGTCTTTTGAAGAAAGTTGAGGGAGGACAACCAATCAGTTTTAGTCAATAGTTG
ATACTGTGGAACTAGTGGGTTATGTAACAAAGTAAAATCATTCTTTGCCAGACATAGTAC
ATTTGAATTTCATGGAAAGCTATCTCTTGATTATTCTGAACTTTCGGTCTAGGGAAGTTT
CTGAATACTAAAATGCTCCTGGAAGATCCAGTGAGGGGACATTGTTATTATGGGAAGATT
GAACAACTCTGTGATCTTCTTGAAATTCGCTTGTGTTCGTTAGTCATCTCCATGTCTGGA
AACAAAAACAGCTTGGTGCCAAACATGGACCAGCAGATATGAATCATGAACTTCAGTGTG
TCTTTTGACTTACAAAATATTTTGGAAGATCCAACATGACTACATTGTTATTATTTGAGG
AATAATATGATCATTTAGAGACTTGTATCTGCTGTCTTTGCTATTCTGGGAGGAAAATTG
CTCAAGTGATATTGCCAAGTCTCAGATCCGTTATATTGAGTATGACCATTCTTTAGGAGT
TGGAACACATTCTACTTGTACATCGAAGTGGTTTTGGACTGTTCAGTAATTGTCTTGTCC
GGAGGTTATTCTGGAATTGCTACTGTTTCTGATCCAGTCAGTTGCAAATGCTCACTGTTT
ATGGGAAAGGTGGAGCATCATTCACGACATGCACCAGTCAACGTTGTTATGAAGCATCAT
TGATCAACACCCAGAATGGTGCATAGGTTGTGGTGAACCGACAAAACAGAAGAGATGATA
CTATGCTAATGTTCAAGGTTGAGAGTTTAACCCCCATCAGATAGTTTGCTCTTAGTAAGC
AGGCAGAGATGTAAAATTTCAACTTCATTTTCCCAGTTGATAAAATACATCATACAACTA
GAAAGGGAGCGAAATACTAAAATTATAGCCTCAAGTTCATGGAAACCCTCTTTGCTGCTT
TGTATCACATTCTCTATCTTATTGAGAGAACAAATCATGATTCTGAGAAATAAGAATATC
ATGTTACATG