Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g100580.3.1
CDS Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RNC6_RICCO)
Sequence

ATGGTGGGCAGAGCTATCTGTTTGAAGCTTCTCCGATCAACGACTTATCGCCGATGTTTC
TCAACAGAAACGGCGGCGGTGGAGACCATATCAACGCCGGCCATCAGCCAAAGAAAACGA
ATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCCAAC
ATTAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGATAGACATT
GTTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAGCTGTCT
GAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGATCGGGCAATACGGATACAC
CTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAA
TCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATG
TTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAATTTTACATCTACTTTA
AATTATAACAATGTGATATCTCTTTATTTAAGAAGTGGTCAGCCTGAAAAAGTCTCTGCA
CTGGTTCAAGAAATGGAGCAGAGAAATATTGCCGTTGATATATTTACCTATAATCAGTTG
ATGAACAGTTATGCTTTAGTGAAGGATATAGTATCAGTTGAGGCTGTTCTTGAAAAGATG
GAAAAGCATCAGGTAAAGTTTGACTGGCTCACATATGGAAACCTAGCTGGGATATATATC
AATAACGGCTACCGTGATAAGGCGAATGATATTCTCCAAAAGATGGAGAAAATGAAAGAT
ATGCATGACCGTGAAGCTTTCCATACCTTAATCACATTATATCAGAAAACATCTAATCCA
TCAGGAGTCAATCGCTCATGGGAATTATTAAAGTCAGTTTTCCCAACTCCCAGCAAGTTT
AGCTATCTCATCGTGCTTTTGGCTCTATCCAAACTGGGGGACTCGGAAGCCCTTGAGAAA
CGTTTTAGAGAATTGGAGTCACATTGTAAATTCTTTGACATCAGAGTTTCAAATGTGATG
ATGGAGTCCTATCTTGACAGAAATATGATCGAAGAAGCAAATTTGCTTTATGAGAATGTG
TTGAAGCAAGGCGTTGAACCCAACTTAAGGACTTACGATGCATTCACAAATTTCTATATA
AAAAATTCGCAGATAGACTCTGCTCTAAAGTATTTGGAGATGGGTGCCAGCAAGGCAAAT
CCTAAGAAAAAAGTTTGGTTTCCTAAGGATGAATCCATCAAGATGTTTCTAGCTTATTTT
GAGGACAGTAATGATCCTGTTAGAGCTGAGAAGTTTTGCGAGATTATGAAGAAGATTAAT
CGCCTCGATTCCAGTGTTTATGACTCTCTTCTAAGCACAAACTCTGCAGCCTCTGAAGTG
GAACTATGA

Peptide Sequence

PEP ID

Solyc01g100580.3.1
PEP Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RNC6_RICCO)
Sequence

MVGRAICLKLLRSTTYRRCFSTETAAVETISTPAISQRKRISDGRRKLSDLINRADSESN
IKDALNKLDNEGESIQKIDIVGCINNLRRTDRFDLALQLSEWMESSKIMISNGDRAIRIH
LLANTKGTDSAEMYFDSLQESEKTSKTYGALLSSYCRQKMFDKVSKLFEKMKELNFTSTL
NYNNVISLYLRSGQPEKVSALVQEMEQRNIAVDIFTYNQLMNSYALVKDIVSVEAVLEKM
EKHQVKFDWLTYGNLAGIYINNGYRDKANDILQKMEKMKDMHDREAFHTLITLYQKTSNP
SGVNRSWELLKSVFPTPSKFSYLIVLLALSKLGDSEALEKRFRELESHCKFFDIRVSNVM
MESYLDRNMIEEANLLYENVLKQGVEPNLRTYDAFTNFYIKNSQIDSALKYLEMGASKAN
PKKKVWFPKDESIKMFLAYFEDSNDPVRAEKFCEIMKKINRLDSSVYDSLLSTNSAASEV
EL*

Transcript Sequence

Transcript ID

Solyc01g100580.3.1
Transcript Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RNC6_RICCO)
Sequence

ATTGGCAATTTTTTGTATTGTTTTTCAACTTTTTGTTTCTTCTTAGTTATAAACCCTAGT
TAAACCCTTCTTCTTCATCCACAAAAGAAATGGTGGGCAGAGCTATCTGTTTGAAGCTTC
TCCGATCAACGACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGTGGAGACCATAT
CAACGCCGGCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACC
TTATCAATAGAGCAGACTCTGAATCCAACATTAAAGATGCTTTAAACAAATTGGATAACG
AAGGGGAATCCATACAAAAGATAGACATTGTTGGCTGTATCAACAATCTCCGTAGAACCG
ATAGGTTTGATCTTGCCCTTCAGCTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCA
GCAATGGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAG
CCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCAC
TTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGA
TGAAGGAGCTTAATTTTACATCTACTTTAAATTATAACAATGTGATATCTCTTTATTTAA
GAAGTGGTCAGCCTGAAAAAGTCTCTGCACTGGTTCAAGAAATGGAGCAGAGAAATATTG
CCGTTGATATATTTACCTATAATCAGTTGATGAACAGTTATGCTTTAGTGAAGGATATAG
TATCAGTTGAGGCTGTTCTTGAAAAGATGGAAAAGCATCAGGTAAAGTTTGACTGGCTCA
CATATGGAAACCTAGCTGGGATATATATCAATAACGGCTACCGTGATAAGGCGAATGATA
TTCTCCAAAAGATGGAGAAAATGAAAGATATGCATGACCGTGAAGCTTTCCATACCTTAA
TCACATTATATCAGAAAACATCTAATCCATCAGGAGTCAATCGCTCATGGGAATTATTAA
AGTCAGTTTTCCCAACTCCCAGCAAGTTTAGCTATCTCATCGTGCTTTTGGCTCTATCCA
AACTGGGGGACTCGGAAGCCCTTGAGAAACGTTTTAGAGAATTGGAGTCACATTGTAAAT
TCTTTGACATCAGAGTTTCAAATGTGATGATGGAGTCCTATCTTGACAGAAATATGATCG
AAGAAGCAAATTTGCTTTATGAGAATGTGTTGAAGCAAGGCGTTGAACCCAACTTAAGGA
CTTACGATGCATTCACAAATTTCTATATAAAAAATTCGCAGATAGACTCTGCTCTAAAGT
ATTTGGAGATGGGTGCCAGCAAGGCAAATCCTAAGAAAAAAGTTTGGTTTCCTAAGGATG
AATCCATCAAGATGTTTCTAGCTTATTTTGAGGACAGTAATGATCCTGTTAGAGCTGAGA
AGTTTTGCGAGATTATGAAGAAGATTAATCGCCTCGATTCCAGTGTTTATGACTCTCTTC
TAAGCACAAACTCTGCAGCCTCTGAAGTGGAACTATGAACACCTTCATGCTCTTGAGGAT
AACATGAGTGGCTCATTGCTCAAAGTTTCTCAACCCTCTCCAAGTGGTATGGAATCTGTC
GATTTCGCTCTACATTTGCCATGTTGCTATTTTTTTCATGCTCTTTGTACTTTACATTAT
TTAAGAACCTTACCAAGAGAGTTATGTCAGCTCACTAGTATTTCTCGCCCATTTTCTGTG
CGGATAAAACTGCGTACCTAACTAACATGCTCTAATATAGCTTGCAATGTTTGATGAATT
AGTGAACATTTTCATTTTCTTG