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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g100570.3.1
CDS Infomation

Nucleolar protein NOP56 (AHRD V3.3 *** A0A061G5W0_THECC)
Sequence

ATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGG
ATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGC
TTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTA
AATCAATGCAATGCTGTTTCTGAAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAG
CGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAG
CCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTT
GTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAG
CCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTC
AAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACT
CTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAGAGAGTGGTACTCTTGGCATTTC
CCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTT
GATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGAT
GAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGGGCCAGGATTTGTCA
CCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTTGTTGAATAC
AGGAAAAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCT
GCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAAT
TTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAGG
GCCTTGAAAACCAAAGGAAATACACCAAAATATGGACTCATATTCCATTCTTCTTTCATT
GGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGCTCGTTATCTTGCAAACAAGTGTTCT
ATTGCTTCTCGTCTCGACTGTTTCTTAGATAAGAGTACTACTACTTTTGGAGAGAAACTC
CGTGAACAAGTTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAAC
CTAGATGTGATGAAAGCTGCTATTGAAACCGTCGAAGATAAAGACACAGAAATGGACGTG
GATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATAT
GCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCC
AAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCAT
GAAGAGGATCAGACTGTTGGTAATGGTAATGGCTTGCCTGTATGCTCCTAG

Peptide Sequence

PEP ID

Solyc01g100570.3.1
PEP Infomation

Nucleolar protein NOP56 (AHRD V3.3 *** A0A061G5W0_THECC)
Sequence

MALYLLYESASGYGLFLAHGIDEIGQNTEAVRNSIDDLNRFGKVVKIEAFNPFESALDAL
NQCNAVSEGQMTEELQNFLERSLPKVKEGKKAKFSLGLAEPKLGSHIHEVTKIPCQSNEF
VLEILRGVRLHFEKFVKNLKPGDSEKAQLGLSHSYSRAKVKFNVNRVDNMVTQAIVLLDT
LDKDINTFAMRVREWYSWHFPELVKIVNDNYLYAKVAKFVDDKSQLSEDKISALTEIVGD
EDKAKEIVEAAKASMGQDLSPVDLINVKLFAQRVMDLVEYRKNLYDYLVAKMHDIAPNLA
ALIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFI
GRASARNKGRMARYLANKCSIASRLDCFLDKSTTTFGEKLREQVEERLDFYDKGVAPRKN
LDVMKAAIETVEDKDTEMDVDEPSTKKSKKKKSKVDVVEYAQPMIEDKPLETNGDASEEP
KSEKKKKKKEKRKSEEEAEHEEDQTVGNGNGLPVCS*

Transcript Sequence

Transcript ID

Solyc01g100570.3.1
Transcript Infomation

Nucleolar protein NOP56 (AHRD V3.3 *** A0A061G5W0_THECC)
Sequence

AAACCTCTTATAAACCCTAACCCTAAACGAGTTCTCTTCCGCTACAATTGAGCAAACATC
GGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGG
GTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCG
GAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCC
TTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAAATGAC
TGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGC
TAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAA
GATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTT
TGAGAAATTTGTTAAAAACCTTAAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAG
TCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCAC
TCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGT
CAGAGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCT
ATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTC
AGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAA
AGCTTCCATGGGCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACA
GAGGGTAATGGACCTTGTTGAATACAGGAAAAATCTTTATGATTATCTTGTCGCCAAAAT
GCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAAT
TTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCT
GGGTGCTGAGAAGGCACTCTTCAGGGCCTTGAAAACCAAAGGAAATACACCAAAATATGG
ACTCATATTCCATTCTTCTTTCATTGGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGC
TCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGTCTCGACTGTTTCTTAGATAAGAG
TACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTCTATGA
CAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCGA
AGATAAAGACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAA
ATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAAC
AAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCG
GAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCTT
GCCTGTATGCTCCTAG