Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g100540.3.1
CDS Infomation

HIT zinc finger,PAPA-1-like conserved region, putative (AHRD V3.3 *** A0A061F305_THECC)
Sequence

ATGGAGAACTTCAGCGGTTTTGGGTTGGGCAACACATTTAGGAAACAGAGAACTGATCTA
TATCGGCGGCCTCAAAAGGAGTCTCAGTTGAATTTAAATTGTCGTGATAATTCATCCATT
TCATCAGCACCACCATCTGATAGTTTGAGCAAATCATCTAGTTGTGATAATGCTGATTAT
GGTAATATTTCAAGAACATCTTATAGTAACCTCATTGAAGCTGAGGCTGCCGGTGAGTTT
GGTGTCGAAGGTGGGAACTCTGGGTACTCCTGTTCCAGTGATACCGAGCAAAAGCATGGT
CAGATAGATATGAGTAGATTTAGTGAAGGAGACCAAGCAACATCTCGGGTAGAGGATCCC
AAAAGTGGAACTGTGATGTGCAGTAATCATTCTGGAATGCCAGGAGTAGTATCAGATGGA
GCTGGGAATGACACCAAAGTCAAGAAAGTGAAACTCAAAGTTGGTGGTGTTACAAAAACA
ATAAACACTTCTGTCGCTGGATCCTCTTCAGATGCCCCTCAGAAATGGCAACCCAAGCAG
AATACAGGTGGACATCATTCCTCTTATAGTGGAAGGGCAATTGGCTTGCGAGGTATCCCC
TGGAAGGATTTTGCTAAAACTGGTTTTGGTGTTAGGAAAGTGGATTCCTCGACGGATCAG
TTACCTGGGCAGTTTGCCCCTTTGAAACAATTAGAAAAATATGAGGCATCTCATAAAAGC
AAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAGGAT
GATGATGATGATGAGATCCGTTTCCTGGAGAAGCTCAGGTCTTCCAAATATTCTGCGTGT
TATAGTGCTGGCTATGAGGATGATGATGAAGTTGGATGTAGAAAAAAGCGGAAGATATCA
AGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCGCTT
AAAGCAGTTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCAGGGTTCGGACTAT
GAAGAGGTGGTGGTTTCTGATACTGAGTTAGTACCGAAGAAGAAGAAAAAACTAAAGGAA
TTAGCTGATATCTCAGTAGTTGAAAGGAGAAAAATGGCCGTGACTACTCGCCAGCAGGCA
CTTCAATCTGGAAAAGATATTTCTTGCAGTGCAGTTGAGTTTCCCCATAGACTTCCACCT
GCACCACCTAAAAAACAAAAGGAGAAGCTCTCTGAAGTGGAGCAGCAGTTGAAGAAAGCT
GAGGCTGCGCAAAGACGCAGGATGCAAGCTGAAAAGGCTGCTCGAGAGTCGGAGGCTGAA
GCAATAAGGAAAATCCTAAGTCAAGATTCTAGTAGGAAAAAGCGAGAAGATAAAATTAAG
AAGCGTCAAGAGGAGTTAGCACAGGTGAGAGTACAAAACAACCCCAGCATTCAGGAAAGA
ACTGGAGCAGCTTCTTCACTATCATCAAATGCTATCAGATGGGTTATGGGTCCTTCTGGT
ACTGTTGTGATATTTCCCAATGAGATGGGACTCCCAAGCATATTTGAACCTAAGGCTTGC
AGCTATCCACCTCCTCGTGAGAAATGTGCCGGTCCATCTTGTATGAATACATACAAATAC
AGAGACTCCAAATCAAAACTGCCTCTCTGCAGTCTCCAGTGCTACAAGGCAATACGTGAG
AAGATTCAACATCTAAGTGCTTGCTGA

Peptide Sequence

PEP ID

Solyc01g100540.3.1
PEP Infomation

HIT zinc finger,PAPA-1-like conserved region, putative (AHRD V3.3 *** A0A061F305_THECC)
Sequence

MENFSGFGLGNTFRKQRTDLYRRPQKESQLNLNCRDNSSISSAPPSDSLSKSSSCDNADY
GNISRTSYSNLIEAEAAGEFGVEGGNSGYSCSSDTEQKHGQIDMSRFSEGDQATSRVEDP
KSGTVMCSNHSGMPGVVSDGAGNDTKVKKVKLKVGGVTKTINTSVAGSSSDAPQKWQPKQ
NTGGHHSSYSGRAIGLRGIPWKDFAKTGFGVRKVDSSTDQLPGQFAPLKQLEKYEASHKS
KSLLKRHLSGETFDDEDTEDDDDDEIRFLEKLRSSKYSACYSAGYEDDDEVGCRKKRKIS
RVLSQSSKVYSADLSYYDSLKAVKGIEKSKSERASQGSDYEEVVVSDTELVPKKKKKLKE
LADISVVERRKMAVTTRQQALQSGKDISCSAVEFPHRLPPAPPKKQKEKLSEVEQQLKKA
EAAQRRRMQAEKAARESEAEAIRKILSQDSSRKKREDKIKKRQEELAQVRVQNNPSIQER
TGAASSLSSNAIRWVMGPSGTVVIFPNEMGLPSIFEPKACSYPPPREKCAGPSCMNTYKY
RDSKSKLPLCSLQCYKAIREKIQHLSAC*

Transcript Sequence

Transcript ID

Solyc01g100540.3.1
Transcript Infomation

HIT zinc finger,PAPA-1-like conserved region, putative (AHRD V3.3 *** A0A061F305_THECC)
Sequence

AAATATTCCCACTATTACAAAGGAAAATAATAAACTGACAAAGGAACATTTTGGTTGTGA
TTACCTCGGGCTGGGGAGCAAGAAGGTGATTGGGAAGTCGCCACGTAATTCTCTCAACTA
TACATCAACACCGCCGGTTAACGCTCATACCTCCGTCTCCGATCATATTAGGGTTCTTGA
GGGTTTTTACCTCAAGGGCCCTGACTATACTCAGAAGCTGTTGCGTGTACCTTCTCTATT
TCTATGGAGAACTTCAGCGGTTTTGGGTTGGGCAACACATTTAGGAAACAGAGAACTGAT
CTATATCGGCGGCCTCAAAAGGAGTCTCAGTTGAATTTAAATTGTCGTGATAATTCATCC
ATTTCATCAGCACCACCATCTGATAGTTTGAGCAAATCATCTAGTTGTGATAATGCTGAT
TATGGTAATATTTCAAGAACATCTTATAGTAACCTCATTGAAGCTGAGGCTGCCGGTGAG
TTTGGTGTCGAAGGTGGGAACTCTGGGTACTCCTGTTCCAGTGATACCGAGCAAAAGCAT
GGTCAGATAGATATGAGTAGATTTAGTGAAGGAGACCAAGCAACATCTCGGGTAGAGGAT
CCCAAAAGTGGAACTGTGATGTGCAGTAATCATTCTGGAATGCCAGGAGTAGTATCAGAT
GGAGCTGGGAATGACACCAAAGTCAAGAAAGTGAAACTCAAAGTTGGTGGTGTTACAAAA
ACAATAAACACTTCTGTCGCTGGATCCTCTTCAGATGCCCCTCAGAAATGGCAACCCAAG
CAGAATACAGGTGGACATCATTCCTCTTATAGTGGAAGGGCAATTGGCTTGCGAGGTATC
CCCTGGAAGGATTTTGCTAAAACTGGTTTTGGTGTTAGGAAAGTGGATTCCTCGACGGAT
CAGTTACCTGGGCAGTTTGCCCCTTTGAAACAATTAGAAAAATATGAGGCATCTCATAAA
AGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAG
GATGATGATGATGATGAGATCCGTTTCCTGGAGAAGCTCAGGTCTTCCAAATATTCTGCG
TGTTATAGTGCTGGCTATGAGGATGATGATGAAGTTGGATGTAGAAAAAAGCGGAAGATA
TCAAGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCG
CTTAAAGCAGTTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCAGGGTTCGGAC
TATGAAGAGGTGGTGGTTTCTGATACTGAGTTAGTACCGAAGAAGAAGAAAAAACTAAAG
GAATTAGCTGATATCTCAGTAGTTGAAAGGAGAAAAATGGCCGTGACTACTCGCCAGCAG
GCACTTCAATCTGGAAAAGATATTTCTTGCAGTGCAGTTGAGTTTCCCCATAGACTTCCA
CCTGCACCACCTAAAAAACAAAAGGAGAAGCTCTCTGAAGTGGAGCAGCAGTTGAAGAAA
GCTGAGGCTGCGCAAAGACGCAGGATGCAAGCTGAAAAGGCTGCTCGAGAGTCGGAGGCT
GAAGCAATAAGGAAAATCCTAAGTCAAGATTCTAGTAGGAAAAAGCGAGAAGATAAAATT
AAGAAGCGTCAAGAGGAGTTAGCACAGGTGAGAGTACAAAACAACCCCAGCATTCAGGAA
AGAACTGGAGCAGCTTCTTCACTATCATCAAATGCTATCAGATGGGTTATGGGTCCTTCT
GGTACTGTTGTGATATTTCCCAATGAGATGGGACTCCCAAGCATATTTGAACCTAAGGCT
TGCAGCTATCCACCTCCTCGTGAGAAATGTGCCGGTCCATCTTGTATGAATACATACAAA
TACAGAGACTCCAAATCAAAACTGCCTCTCTGCAGTCTCCAGTGCTACAAGGCAATACGT
GAGAAGATTCAACATCTAAGTGCTTGCTGAACAGAGCTCTCACAGCCCTGATACTAATGG
GCACTTGGACTTTATTTGTAGAGATTCATGTGGGAACTGCAAAGAAATGGTTGTGTTCCA
TATCATCATTGTGCCTATGCCCCGTTTACCAAGAATTCTAGTATGTGTAGAGTAGCTTCA
TAAAGCTACTAAATATCTCATAACAGAGTCTTTTGTCCGACTCAATTGAAAGTGGGATGA
ATCACACATAATCTACGGTGCACCTTCTGAATAGAAATGCTCTAAGAATTTGTGCTTGGA
AGAGTGAACAAAAGTATAAGAAGAAACCTTTCTCGGTCACCTCTACAACCAATAAGATCA
GGCTGAACATGGATGGAATTGCTGAGGGTGATCTCGACGATCCATTATTTGGTGACATTG
TCCATAGCAGAGGTGGCGGATGTGGGTACATAGGGATAATTGGTATTCGGAACAGTCATG
CTGCTGAGCTATGGAACTCAAGGATGAAAGTTTTTATCTAAACGTTTTGAAGTGGAATGT
CTGTCTAAGCTGTAATGATGTGCTGAATATTACTCCGTTTGATTAAGTGCCTATATTCAA
TATTGTCACTCTTCAGTTCTTGTTCCTGGGAATATGTAAAGGCACACATCAGTATATTCC
AGCTGAGAAATTGAACCCAAGAACCCCAATT