Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g100500.3.1
CDS Infomation

Microfibrillar-associated protein 1 (AHRD V3.3 *** A0A0K9NTB2_ZOSMR)
Sequence

ATGTCTGTAACAGCTGGCGTAAGTGATGCAATTATTGCAATTAGGGAAAAGCTCAGGGGT
AAAATTGGCCAAACAAAAGTGAAAAGATATTGGCCTGGTAAAGCTCCTGAATGGGCAGAT
GAACCGGAAAAAGATGAGGATATGCGGATGAACAGGGAAGCAGCACTTGAGAAAGCCTTT
CCCAGCCAGGGTGGTCCAGACATTGCAAGGAAAGATGATGCAAGGCTGCGTCGACTGGCA
GAGAGTAAAGTTGATAATCGTGAGGAAATCAGAGCAGATCATCGACGCATCCGGCAAGCA
GAGATTGTTTCAACCATTGAAGAGGAAAATAGAAGACTAGAAAGAATGGAATTTGAGGAG
GATGACGAAGATGCCTTGGATGAAAGGAGGAGGAGAATCAGGGAAAAAAATCTTCAGAGG
CAACAAGAAGAAGCTCTGCCGGAGGAAGAAGAAGAGGAGGTAGAAGAAGAGGAGGAAGAG
GAATCAGAATATGAGACTGAATCAGAGGAAGATACCACTGGGATAGCCATGGTGAAACCA
GTTTTTGTTCCAAAATCTGAGCGAGACACCATAGATGAGCGTGAAAAGCGCGAGGCAGAG
GAACGAGCTCTCGAGGAGTTAGTGAAGAAGAGGTTAGAGGAGAGAAAACTTGAAACAAAG
CAAATAGTAGTTGAGAAGATACGAGAGGAGGAAATAATTCAGAAAAATTTGGAGCTGGAA
GCTAATATTGCTGATGTAGATACTGATGATGAGGTGAATGAGGCTGAAGAATACGAAGCT
TGGAAGTCCAGAGAAATTGCCAGGATCAAGAGGGAGAGGGAGGACAGGGAGGCTAGTAAG
AAGGAGAGAGAAGAAATAGAGAGAGTAAGAAATATGACGGAAGAAGAGAGGAAGGAGTGG
GAGAGGAGAAACCCGAAACCTGCCCCACCACCCAAGCAGAAGTGGAAGTTTATGCAGAAA
TATTACCACAAGGGTGCTTTCTTCCAGTCAGATGCTGATGACGTAGCTGGAACTTCTGGC
GCTGATAATATATTCCACCGTGATTTCTCTGCACCAACAGGGGAGGACAAGTTGGATAAA
TCCATACTACCCAAAGTCATGCAGGTCAAACACTTTGGTCGCAGTGGAAGGACAAAATGG
ACACATCTTGTCAATGAGGACACAACTGATTGGAACAATCCGTGGACATACAATGACTCT
CTTCGGGCCAAGTACAATACAAAAATGGCTGCTGTTAATGCTCCTATTGCAAAGCCTAAG
GGTAAGAAATTGAAGGATTGGGAGACCCGGTGA

Peptide Sequence

PEP ID

Solyc01g100500.3.1
PEP Infomation

Microfibrillar-associated protein 1 (AHRD V3.3 *** A0A0K9NTB2_ZOSMR)
Sequence

MSVTAGVSDAIIAIREKLRGKIGQTKVKRYWPGKAPEWADEPEKDEDMRMNREAALEKAF
PSQGGPDIARKDDARLRRLAESKVDNREEIRADHRRIRQAEIVSTIEEENRRLERMEFEE
DDEDALDERRRRIREKNLQRQQEEALPEEEEEEVEEEEEEESEYETESEEDTTGIAMVKP
VFVPKSERDTIDEREKREAEERALEELVKKRLEERKLETKQIVVEKIREEEIIQKNLELE
ANIADVDTDDEVNEAEEYEAWKSREIARIKREREDREASKKEREEIERVRNMTEEERKEW
ERRNPKPAPPPKQKWKFMQKYYHKGAFFQSDADDVAGTSGADNIFHRDFSAPTGEDKLDK
SILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDSLRAKYNTKMAAVNAPIAKPK
GKKLKDWETR*

Transcript Sequence

Transcript ID

Solyc01g100500.3.1
Transcript Infomation

Microfibrillar-associated protein 1 (AHRD V3.3 *** A0A0K9NTB2_ZOSMR)
Sequence

ACATCACTTCGATTCGGAGTGTATCCCCGACCGCCATTATCGAGCGAGTCTATTCCCAAA
GCCAATCTCCGGCGATTAAATCATCTCCGTCGACTCTAAGGGTTCCTTTTGGAAGGAGTA
GGGTTTATATTCAAGAGAGCGAGAACTAAGGGAGATCATATCATTGGGTTCAGAGGCTAG
AAGTGTATAAAGTGTCCACTGTTCCGTTTAGATACCATATTCTTCAAGGAGGTTCTTTCT
ATTATAAAAATGTCTGTAACAGCTGGCGTAAGTGATGCAATTATTGCAATTAGGGAAAAG
CTCAGGGGTAAAATTGGCCAAACAAAAGTGAAAAGATATTGGCCTGGTAAAGCTCCTGAA
TGGGCAGATGAACCGGAAAAAGATGAGGATATGCGGATGAACAGGGAAGCAGCACTTGAG
AAAGCCTTTCCCAGCCAGGGTGGTCCAGACATTGCAAGGAAAGATGATGCAAGGCTGCGT
CGACTGGCAGAGAGTAAAGTTGATAATCGTGAGGAAATCAGAGCAGATCATCGACGCATC
CGGCAAGCAGAGATTGTTTCAACCATTGAAGAGGAAAATAGAAGACTAGAAAGAATGGAA
TTTGAGGAGGATGACGAAGATGCCTTGGATGAAAGGAGGAGGAGAATCAGGGAAAAAAAT
CTTCAGAGGCAACAAGAAGAAGCTCTGCCGGAGGAAGAAGAAGAGGAGGTAGAAGAAGAG
GAGGAAGAGGAATCAGAATATGAGACTGAATCAGAGGAAGATACCACTGGGATAGCCATG
GTGAAACCAGTTTTTGTTCCAAAATCTGAGCGAGACACCATAGATGAGCGTGAAAAGCGC
GAGGCAGAGGAACGAGCTCTCGAGGAGTTAGTGAAGAAGAGGTTAGAGGAGAGAAAACTT
GAAACAAAGCAAATAGTAGTTGAGAAGATACGAGAGGAGGAAATAATTCAGAAAAATTTG
GAGCTGGAAGCTAATATTGCTGATGTAGATACTGATGATGAGGTGAATGAGGCTGAAGAA
TACGAAGCTTGGAAGTCCAGAGAAATTGCCAGGATCAAGAGGGAGAGGGAGGACAGGGAG
GCTAGTAAGAAGGAGAGAGAAGAAATAGAGAGAGTAAGAAATATGACGGAAGAAGAGAGG
AAGGAGTGGGAGAGGAGAAACCCGAAACCTGCCCCACCACCCAAGCAGAAGTGGAAGTTT
ATGCAGAAATATTACCACAAGGGTGCTTTCTTCCAGTCAGATGCTGATGACGTAGCTGGA
ACTTCTGGCGCTGATAATATATTCCACCGTGATTTCTCTGCACCAACAGGGGAGGACAAG
TTGGATAAATCCATACTACCCAAAGTCATGCAGGTCAAACACTTTGGTCGCAGTGGAAGG
ACAAAATGGACACATCTTGTCAATGAGGACACAACTGATTGGAACAATCCGTGGACATAC
AATGACTCTCTTCGGGCCAAGTACAATACAAAAATGGCTGCTGTTAATGCTCCTATTGCA
AAGCCTAAGGGTAAGAAATTGAAGGATTGGGAGACCCGGTGAAGCCATATTGTAGTCTGG
TTCTTGGTTGTGCTCATGGTTTAGCTTTCAGGTTGTTTGAAGCACTGTACTGACTTTCTG
TTTTTCTGTTATATCATCTGTAGCGCTTGTATGAAGTTATATGAATGGCAGAGAAGCACA
TTCTAGTGTCAGTTTCAGAATTATCCAATTGTCTCCTTAATTGAATCATTCATGCATTAG
GGCATAGATTGTATTTCACTTCTTAATTATTGAGATATTCTATACTAAAAACATGAACAG
AATTTGTTCTCTGTATTTCTATGCTCAACTAAAATCATGAGTTGAACTTGTGTACCATCA
ATTCGTGATGCATAGTGTTCATTTCTTGCTATCTTGGGCAATGGG