Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g100380.3.1
CDS Infomation

Calreticulin (AHRD V3.3 *** CALR_NICPL)
Sequence

ATGGCTACTCGACGAATGAAAAGCCCTAGCTCTCTCCATCTCGTTGCTGTGTTCTCTCTA
CTAGTAGTCGCCGCCGCCGCCGAAGTTTTCTTCCAGGAAAGCTTCAATGATGGTTGGGAA
AGCAGGTGGGTAAAATCTGAATGGAAGAAAGATGAAAACATGGCTGGAGAGTGGAATCAC
ACCTCTGGGAAGTGGAATGGTGACGCCAATGACAAAGGTATTCAGACCAGTGAAGACTAC
AGGTTCTACGCCATTTCGGCTGAGTTCCCTGAATTTAGTAACAAGGGAAAGAACTTAGTG
TTCCAGTTCTCTGTTAAGCATGAGCAGAAGCTTGACTGTGGTGGTGGGTACATGAAGTTG
CTTAGTGGAGACGTTGACCAAAAGAAATTCGGTGGTGACACTCCCTACAGTATCATGTTT
GGACCAGACATCTGTGGCTACAGTACCAAGAAAGTCCATGCTATTCTCACTTATAACGAG
ACAAACCATTTGATCAAGAAGGAAGTCCCATGTGAGACTGATCAGCTGACCCATGTCTAC
ACTTTCATCCTCCGTCCTGATGCCACATACAGTATTCTCATTGACAATGTGGAGAAACAG
TCTGGTAGCTTGTACTCTGATTGGGACATTCTCCCACCAAAGAAGATCAAGGATCCAAGT
GCCAAGAAACCTGAAGATTGGGATGACAAGGAATTCATTGATGATCCCGAGGATAAGAAG
CCAGAGGGCTATGATGACATTCCAGAGGAGATAACTGATCCTGAAGCCAAGAAGCCAGAG
GACTGGGATGATGAAGAAGATGGTGAATGGACAGCCCCAACCATCCCCAATCCAGAGTAC
AAGGGCCCATGGAAGGCAAAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGGCT
CCTATGATTGACAACCCAGACTTCAAGGATGACCCAGATCTATATGTTTTCCCAAAATTG
AAGTATGTTGGAGTGGAGCTGTGGCAAGTGAAATCTGGAACTTTGTTTGACAATGTTGTG
ATATGCGATGATCCAGAGTTTGCCAAGTCAATTGCAGAGGAAACATGGGGAAAGCAGAAA
GATGCTGAAAAGGCTGCTTTTGAGGAAGCAGAAAAGAAGAGAGAGGAGGAGGAATCAAAG
AATGCTCCAGCTGAATCTGATGATGAACTGTAA

Peptide Sequence

PEP ID

Solyc01g100380.3.1
PEP Infomation

Calreticulin (AHRD V3.3 *** CALR_NICPL)
Sequence

MATRRMKSPSSLHLVAVFSLLVVAAAAEVFFQESFNDGWESRWVKSEWKKDENMAGEWNH
TSGKWNGDANDKGIQTSEDYRFYAISAEFPEFSNKGKNLVFQFSVKHEQKLDCGGGYMKL
LSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNETNHLIKKEVPCETDQLTHVY
TFILRPDATYSILIDNVEKQSGSLYSDWDILPPKKIKDPSAKKPEDWDDKEFIDDPEDKK
PEGYDDIPEEITDPEAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKAKKIKNPNYKGKWKA
PMIDNPDFKDDPDLYVFPKLKYVGVELWQVKSGTLFDNVVICDDPEFAKSIAEETWGKQK
DAEKAAFEEAEKKREEEESKNAPAESDDEL*

Transcript Sequence

Transcript ID

Solyc01g100380.3.1
Transcript Infomation

Calreticulin (AHRD V3.3 *** CALR_NICPL)
Sequence

GCGTTCGTCAGAGATCTCACAGTCAGTATTTTCCATCTCACACAATAGTGGCCATGGCTA
CTCGACGAATGAAAAGCCCTAGCTCTCTCCATCTCGTTGCTGTGTTCTCTCTACTAGTAG
TCGCCGCCGCCGCCGAAGTTTTCTTCCAGGAAAGCTTCAATGATGGTTGGGAAAGCAGGT
GGGTAAAATCTGAATGGAAGAAAGATGAAAACATGGCTGGAGAGTGGAATCACACCTCTG
GGAAGTGGAATGGTGACGCCAATGACAAAGGTATTCAGACCAGTGAAGACTACAGGTTCT
ACGCCATTTCGGCTGAGTTCCCTGAATTTAGTAACAAGGGAAAGAACTTAGTGTTCCAGT
TCTCTGTTAAGCATGAGCAGAAGCTTGACTGTGGTGGTGGGTACATGAAGTTGCTTAGTG
GAGACGTTGACCAAAAGAAATTCGGTGGTGACACTCCCTACAGTATCATGTTTGGACCAG
ACATCTGTGGCTACAGTACCAAGAAAGTCCATGCTATTCTCACTTATAACGAGACAAACC
ATTTGATCAAGAAGGAAGTCCCATGTGAGACTGATCAGCTGACCCATGTCTACACTTTCA
TCCTCCGTCCTGATGCCACATACAGTATTCTCATTGACAATGTGGAGAAACAGTCTGGTA
GCTTGTACTCTGATTGGGACATTCTCCCACCAAAGAAGATCAAGGATCCAAGTGCCAAGA
AACCTGAAGATTGGGATGACAAGGAATTCATTGATGATCCCGAGGATAAGAAGCCAGAGG
GCTATGATGACATTCCAGAGGAGATAACTGATCCTGAAGCCAAGAAGCCAGAGGACTGGG
ATGATGAAGAAGATGGTGAATGGACAGCCCCAACCATCCCCAATCCAGAGTACAAGGGCC
CATGGAAGGCAAAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGGCTCCTATGA
TTGACAACCCAGACTTCAAGGATGACCCAGATCTATATGTTTTCCCAAAATTGAAGTATG
TTGGAGTGGAGCTGTGGCAAGTGAAATCTGGAACTTTGTTTGACAATGTTGTGATATGCG
ATGATCCAGAGTTTGCCAAGTCAATTGCAGAGGAAACATGGGGAAAGCAGAAAGATGCTG
AAAAGGCTGCTTTTGAGGAAGCAGAAAAGAAGAGAGAGGAGGAGGAATCAAAGAATGCTC
CAGCTGAATCTGATGATGAACTGTAAGAGCCAAGCATTTTGATTCAACTGACAAAGAAGC
TTACTTGGCAGTTCCCGGAAGATTTCGTCCTCCCTCCCCCCCTTTTTTTTCCTTATTAGT
GAATTAGTAGCCCCTTCCCAATTTTAGTGAAAAGACAGAGATTGAGGGTGCATGAGGTCT
TATATGGCTGATTGCTTTGATGTCATTGGGACTCGGCCGTTAGAAATACATGTTTGGTTT
TGAGTAGAATTTTAAACTAAATGGTGTTGAAATTACACTAGTTAATTTCTACCTAATTTT
CTATTTAAATTGCTCCTTGTCTTCGATTATTTACTGTTTGCTGCTGTATTTTATTGCTTG
AAGTAAGTAAATCTGTTAATCGAGTGTAATATTCATAACTCTTCCGATACAACTTGACCA
GTAAAATCGGATACAATCATTTCATTCTCACACAATAATTA